Wall clock time and date at job start Fri Apr 10 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47507 * 2 1 4 4 N 1.46891 * 109.47634 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99817 * 66.04986 * 4 3 2 6 6 C 1.46896 * 111.00268 * 190.00042 * 4 3 2 7 7 C 1.50700 * 109.47161 * 170.00132 * 6 4 3 8 8 O 1.21282 * 120.00058 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99997 * 179.97438 * 7 6 4 10 10 C 1.46921 * 120.63225 * 0.02846 * 9 7 6 11 11 C 1.53191 * 108.77411 * 233.58641 * 10 9 7 12 12 C 1.53043 * 109.31132 * 305.35957 * 11 10 9 13 13 H 1.09002 * 109.46131 * 301.34824 * 12 11 10 14 14 C 1.53001 * 109.44748 * 181.37889 * 12 11 10 15 15 C 1.53046 * 109.53475 * 61.36818 * 12 11 10 16 16 H 1.08995 * 109.49919 * 58.61932 * 15 12 11 17 17 C 1.53006 * 109.49435 * 178.68408 * 15 12 11 18 18 N 1.46495 * 109.46960 * 185.00197 * 17 15 12 19 19 C 1.36936 * 119.99962 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00154 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00066 * 179.97438 * 19 18 17 22 22 N 1.31627 * 119.99844 * 359.97438 * 21 19 18 23 23 Si 1.86791 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47214 * 89.99987 * 23 21 19 25 25 H 1.48507 * 109.47286 * 209.99878 * 23 21 19 26 26 H 1.48499 * 109.47118 * 330.00085 * 23 21 19 27 27 C 1.46925 * 120.62980 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.46874 * 59.99696 * 1 2 3 29 29 H 1.09001 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46926 * 299.99969 * 1 2 3 31 31 H 1.09008 * 109.47135 * 240.00406 * 2 1 3 32 32 H 1.09003 * 109.47504 * 120.00516 * 2 1 3 33 33 H 1.09008 * 109.46591 * 60.00073 * 3 2 1 34 34 H 1.09003 * 109.47160 * 300.00727 * 3 2 1 35 35 H 1.09001 * 109.47042 * 183.95682 * 5 4 3 36 36 H 1.09004 * 109.46659 * 303.95332 * 5 4 3 37 37 H 1.08997 * 109.47172 * 63.95397 * 5 4 3 38 38 H 1.08997 * 109.46911 * 50.00422 * 6 4 3 39 39 H 1.08999 * 109.47531 * 290.00500 * 6 4 3 40 40 H 1.09002 * 109.58756 * 353.36576 * 10 9 7 41 41 H 1.09001 * 109.59125 * 113.65472 * 10 9 7 42 42 H 1.09004 * 109.49733 * 185.41012 * 11 10 9 43 43 H 1.08994 * 109.50132 * 65.31225 * 11 10 9 44 44 H 1.08992 * 109.47480 * 299.96774 * 14 12 11 45 45 H 1.08996 * 109.47171 * 59.97125 * 14 12 11 46 46 H 1.09008 * 109.46811 * 179.97438 * 14 12 11 47 47 H 1.09001 * 109.46991 * 304.99842 * 17 15 12 48 48 H 1.09000 * 109.47170 * 64.99839 * 17 15 12 49 49 H 0.97002 * 120.00280 * 359.97438 * 18 17 15 50 50 H 0.96999 * 119.99556 * 179.97438 * 22 21 19 51 51 H 1.09003 * 109.59222 * 6.62634 * 27 9 7 52 52 H 1.09006 * 109.70276 * 246.27263 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0359 0.8856 -1.2525 6 6 4.0354 2.7931 0.2388 7 6 5.5216 2.7183 0.4767 8 8 6.0868 1.6455 0.4500 9 7 6.2229 3.8436 0.7182 10 6 5.5524 5.1505 0.7532 11 6 6.2699 6.0987 -0.2127 12 6 7.7589 6.1466 0.1378 13 1 7.8790 6.4834 1.1675 14 6 8.4727 7.1192 -0.8032 15 6 8.3661 4.7502 -0.0160 16 1 8.2249 4.4028 -1.0395 17 6 9.8615 4.8056 0.3028 18 7 10.4655 3.4970 0.0406 19 6 11.8042 3.3053 0.2556 20 1 12.4149 4.1190 0.6182 21 6 12.3765 2.0652 0.0077 22 7 11.6322 1.0733 -0.4337 23 14 14.2028 1.8039 0.3004 24 1 14.4200 1.3479 1.6968 25 1 14.7129 0.7751 -0.6413 26 1 14.9273 3.0810 0.0783 27 6 7.6724 3.7868 0.9514 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 5.1233 0.8322 -1.1975 36 1 3.6303 -0.1147 -1.4044 37 1 3.7452 1.5259 -2.0853 38 1 3.5486 3.2236 1.1138 39 1 3.8378 3.4188 -0.6315 40 1 4.5124 5.0359 0.4475 41 1 5.5937 5.5554 1.7643 42 1 5.8434 7.0980 -0.1255 43 1 6.1480 5.7384 -1.2341 44 1 8.3527 6.7826 -1.8329 45 1 8.0408 8.1139 -0.6935 46 1 9.5332 7.1539 -0.5536 47 1 10.3390 5.5584 -0.3244 48 1 9.9999 5.0660 1.3521 49 1 9.9171 2.7660 -0.2847 50 1 12.0322 0.2069 -0.6073 51 1 8.0312 2.7724 0.7768 52 1 7.8911 4.0799 1.9783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133274516.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:57 Heat of formation + Delta-G solvation = -51.644989 kcal Electronic energy + Delta-G solvation = -27139.706421 eV Core-core repulsion = 23559.131662 eV Total energy + Delta-G solvation = -3580.574759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.41765 -39.52838 -38.09300 -36.60541 -35.06064 -34.09816 -33.50168 -31.57827 -29.99073 -28.74050 -27.93757 -27.02670 -25.08461 -24.54374 -23.63266 -22.57076 -21.67986 -21.10146 -19.89271 -19.13996 -18.18100 -17.08970 -16.93909 -16.75495 -16.42010 -16.02587 -15.65489 -15.57626 -15.34565 -15.16691 -14.97015 -14.63563 -14.41213 -14.22499 -14.08639 -13.90332 -13.64319 -13.10733 -13.05154 -12.99108 -12.81111 -12.75512 -12.68315 -12.62739 -12.56720 -12.38132 -12.16638 -12.00591 -11.91916 -11.90681 -11.74047 -11.44818 -11.27629 -11.14333 -10.95192 -10.65260 -9.59736 -9.26721 -9.00610 -7.95201 -5.25644 1.43678 1.47094 1.55423 1.67223 1.94022 2.54512 2.96009 3.37474 3.53382 3.71036 3.82508 3.86971 3.97293 4.08075 4.13549 4.19973 4.24408 4.26777 4.32532 4.43865 4.47555 4.50949 4.55068 4.58371 4.61646 4.70047 4.76363 4.80432 4.83474 4.86014 4.88944 4.97218 4.98280 5.08325 5.11777 5.14095 5.24336 5.24894 5.29276 5.30949 5.44219 5.45633 5.47628 5.58173 5.59396 5.93061 6.12194 6.25263 6.52217 7.28781 7.30434 8.07584 8.29537 9.28297 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.003264 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.087660 B = 8575.698280 C =10364.781559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.059 3.941 4 N -0.551 5.551 5 C 0.023 3.977 6 C 0.049 3.951 7 C 0.498 3.502 8 O -0.575 6.575 9 N -0.611 5.611 10 C 0.100 3.900 11 C -0.122 4.122 12 C -0.079 4.079 13 H 0.083 0.917 14 C -0.145 4.145 15 C -0.086 4.086 16 H 0.047 0.953 17 C 0.156 3.844 18 N -0.748 5.748 19 C -0.245 4.245 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.977 3.023 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.129 3.871 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.132 0.868 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.047 0.953 47 H 0.033 0.967 48 H 0.022 0.978 49 H 0.369 0.631 50 H 0.250 0.750 51 H 0.046 0.954 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.481 12.460 0.883 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.068 4.068 4 N -0.276 5.276 5 C -0.125 4.125 6 C -0.081 4.081 7 C 0.287 3.713 8 O -0.454 6.454 9 N -0.345 5.345 10 C -0.021 4.021 11 C -0.160 4.160 12 C -0.098 4.098 13 H 0.102 0.898 14 C -0.202 4.202 15 C -0.106 4.106 16 H 0.066 0.934 17 C 0.030 3.970 18 N -0.391 5.391 19 C -0.376 4.376 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.006 3.994 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.131 0.869 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.040 0.960 49 H 0.201 0.799 50 H 0.058 0.942 51 H 0.064 0.936 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -24.875 11.679 1.303 27.511 hybrid contribution 1.263 -0.743 -0.769 1.655 sum -23.612 10.935 0.534 26.026 Atomic orbital electron populations 1.21688 0.93894 1.02221 1.02418 1.21544 0.96632 0.96098 1.01877 1.22259 0.84579 0.97958 1.01995 1.61574 1.08960 1.20853 1.36169 1.22443 1.00739 1.00210 0.89124 1.22037 0.90041 0.91514 1.04537 1.21406 0.90856 0.83187 0.75830 1.90723 1.72482 1.30282 1.51911 1.48294 1.07736 1.08004 1.70427 1.22134 0.97489 0.81031 1.01426 1.21976 0.93812 1.01130 0.99068 1.21093 0.95562 0.92114 1.01014 0.89848 1.21856 1.00308 0.99380 0.98700 1.21535 0.94069 0.96872 0.98109 0.93425 1.20933 0.91490 0.87183 0.97420 1.42686 1.06685 1.09794 1.79894 1.19669 0.86457 0.95988 1.35527 0.90290 1.25681 1.02679 0.96034 1.02932 1.69881 1.36472 1.02494 1.53470 0.85080 0.79757 0.77564 0.77002 1.21400 1.22288 1.18951 1.21285 0.79932 0.99668 0.98503 0.92112 0.92353 0.91867 0.92666 0.92588 0.89179 0.93506 0.93194 0.90744 0.94815 0.85000 0.89562 0.86923 0.89326 0.86958 0.92383 0.93653 0.90110 0.93390 0.94912 0.96024 0.79919 0.94165 0.93565 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.12 -2.00 5.86 30.59 0.18 -1.82 16 3 C 0.06 0.93 4.96 86.30 0.43 1.36 16 4 N -0.55 -13.00 4.50 -927.06 -4.17 -17.17 16 5 C 0.02 0.60 9.01 127.69 1.15 1.75 16 6 C 0.05 0.99 3.79 85.56 0.32 1.31 16 7 C 0.50 15.61 7.42 87.66 0.65 16.26 16 8 O -0.58 -25.34 13.72 -3.03 -0.04 -25.38 16 9 N -0.61 -16.78 2.97 -818.99 -2.43 -19.21 16 10 C 0.10 1.53 6.34 86.36 0.55 2.08 16 11 C -0.12 -1.87 5.36 30.67 0.16 -1.70 16 12 C -0.08 -1.73 2.23 -10.76 -0.02 -1.76 16 13 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 14 C -0.15 -3.05 8.82 71.98 0.63 -2.41 16 15 C -0.09 -2.87 1.92 -10.73 -0.02 -2.89 16 16 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 17 C 0.16 6.46 5.41 86.38 0.47 6.93 16 18 N -0.75 -40.85 5.38 -343.45 -1.85 -42.70 16 19 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.37 16 21 C -0.08 -4.96 5.50 84.86 0.47 -4.50 16 22 N -0.97 -64.17 13.06 21.65 0.28 -63.88 16 23 Si 0.98 48.51 29.55 68.60 2.03 50.54 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 26 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 27 C 0.13 4.63 5.52 86.35 0.48 5.10 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.98 6.47 -2.38 -0.02 0.96 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.12 7.93 -2.38 -0.02 1.10 16 34 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 35 H 0.05 1.76 5.88 -2.39 -0.01 1.74 16 36 H 0.07 1.81 6.30 -2.38 -0.02 1.79 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.13 1.79 7.73 -2.39 -0.02 1.77 16 39 H 0.09 1.31 7.67 -2.39 -0.02 1.29 16 40 H 0.11 1.00 5.93 -2.39 -0.01 0.98 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.05 1.17 6.29 -2.38 -0.01 1.15 16 47 H 0.03 1.33 6.14 -2.39 -0.01 1.32 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.37 22.23 6.90 -92.71 -0.64 21.59 16 50 H 0.25 15.96 8.31 -92.71 -0.77 15.19 16 51 H 0.05 2.19 6.21 -2.39 -0.01 2.18 16 52 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -81.08 394.26 1.05 -80.03 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.24 Total: 32.58 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 7.00 Total: 5.20 kcal Atomic # 7 Polarization: -134.80 SS G_CDS: -8.17 Total: -142.97 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.04 Total: -25.38 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -81.08 1.05 -80.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274516.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.384 kcal (2) G-P(sol) polarization free energy of solvation -81.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds