Wall clock time and date at job start Fri Apr 10 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47019 * 2 1 4 4 N 1.46905 * 109.47053 * 179.97438 * 3 2 1 5 5 C 1.46906 * 110.99995 * 66.04702 * 4 3 2 6 6 C 1.46897 * 111.00158 * 189.99961 * 4 3 2 7 7 C 1.50694 * 109.47330 * 170.00077 * 6 4 3 8 8 O 1.21286 * 120.00196 * 0.02562 * 7 6 4 9 9 N 1.34777 * 120.00346 * 179.97438 * 7 6 4 10 10 C 1.46926 * 120.62913 * 359.72674 * 9 7 6 11 11 C 1.52760 * 109.00663 * 233.58143 * 10 9 7 12 12 C 1.53037 * 109.38363 * 305.58432 * 11 10 9 13 13 H 1.09002 * 109.46484 * 181.25901 * 12 11 10 14 14 C 1.53002 * 109.46220 * 301.22125 * 12 11 10 15 15 C 1.53042 * 109.53957 * 61.24282 * 12 11 10 16 16 H 1.09002 * 109.49762 * 58.58167 * 15 12 11 17 17 C 1.53000 * 109.52846 * 178.66949 * 15 12 11 18 18 N 1.46497 * 109.47178 * 184.84929 * 17 15 12 19 19 C 1.36935 * 120.00070 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99647 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00444 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99426 * 0.02562 * 21 19 18 23 23 Si 1.86791 * 120.00429 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47535 * 89.99698 * 23 21 19 25 25 H 1.48497 * 109.47351 * 210.00416 * 23 21 19 26 26 H 1.48505 * 109.47129 * 329.99978 * 23 21 19 27 27 C 1.46926 * 120.63366 * 179.97438 * 9 7 6 28 28 H 1.09002 * 109.46818 * 299.99985 * 1 2 3 29 29 H 1.08994 * 109.47122 * 59.99961 * 1 2 3 30 30 H 1.08996 * 109.47157 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46818 * 240.00015 * 2 1 3 32 32 H 1.08994 * 109.47122 * 120.00039 * 2 1 3 33 33 H 1.09002 * 109.47313 * 60.00318 * 3 2 1 34 34 H 1.09005 * 109.47359 * 299.99535 * 3 2 1 35 35 H 1.08992 * 109.47459 * 183.95199 * 5 4 3 36 36 H 1.09004 * 109.47040 * 303.95350 * 5 4 3 37 37 H 1.09000 * 109.47033 * 63.95302 * 5 4 3 38 38 H 1.09009 * 109.47296 * 290.00003 * 6 4 3 39 39 H 1.09002 * 109.47055 * 49.99701 * 6 4 3 40 40 H 1.09005 * 109.58352 * 353.41064 * 10 9 7 41 41 H 1.08994 * 109.59348 * 113.84128 * 10 9 7 42 42 H 1.09003 * 109.56676 * 185.54836 * 11 10 9 43 43 H 1.09001 * 109.38941 * 65.51376 * 11 10 9 44 44 H 1.08997 * 109.47426 * 180.02562 * 14 12 11 45 45 H 1.09007 * 109.46688 * 300.06959 * 14 12 11 46 46 H 1.09000 * 109.46783 * 60.06224 * 14 12 11 47 47 H 1.09001 * 109.46790 * 304.85423 * 17 15 12 48 48 H 1.09001 * 109.46938 * 64.84856 * 17 15 12 49 49 H 0.97001 * 120.00049 * 0.02562 * 18 17 15 50 50 H 0.97004 * 119.99422 * 180.02562 * 22 21 19 51 51 H 1.08999 * 109.58813 * 246.16161 * 27 9 7 52 52 H 1.08995 * 109.58404 * 6.44534 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0360 0.8855 -1.2524 6 6 4.0354 2.7931 0.2388 7 6 5.5215 2.7183 0.4767 8 8 6.0868 1.6456 0.4500 9 7 6.2229 3.8436 0.7182 10 6 5.5535 5.1512 0.7466 11 6 6.2702 6.0980 -0.2144 12 6 7.7591 6.1461 0.1360 13 1 8.2679 6.8384 -0.5348 14 6 7.9278 6.6199 1.5809 15 6 8.3662 4.7495 -0.0168 16 1 8.2244 4.4011 -1.0398 17 6 9.8617 4.8044 0.3015 18 7 10.4643 3.4942 0.0435 19 6 11.8030 3.3020 0.2579 20 1 12.4146 4.1164 0.6176 21 6 12.3741 2.0608 0.0130 22 7 11.6288 1.0686 -0.4258 23 14 14.2001 1.7985 0.3061 24 1 14.4172 1.3459 1.7037 25 1 14.7091 0.7670 -0.6330 26 1 14.9259 3.0744 0.0807 27 6 7.6722 3.7867 0.9526 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8901 35 1 5.1232 0.8322 -1.1975 36 1 3.6304 -0.1148 -1.4043 37 1 3.7453 1.5258 -2.0853 38 1 3.8378 3.4188 -0.6317 39 1 3.5485 3.2237 1.1138 40 1 4.5145 5.0366 0.4375 41 1 5.5935 5.5605 1.7560 42 1 5.8437 7.0975 -0.1281 43 1 6.1482 5.7375 -1.2358 44 1 8.9882 6.6546 1.8305 45 1 7.4955 7.6146 1.6899 46 1 7.4196 5.9275 2.2520 47 1 10.3399 5.5546 -0.3283 48 1 10.0007 5.0681 1.3499 49 1 9.9150 2.7629 -0.2799 50 1 12.0278 0.2011 -0.5965 51 1 7.8882 4.0826 1.9792 52 1 8.0303 2.7716 0.7818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133274517.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:00 Heat of formation + Delta-G solvation = -48.796575 kcal Electronic energy + Delta-G solvation = -27276.616467 eV Core-core repulsion = 23696.165224 eV Total energy + Delta-G solvation = -3580.451242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.52910 -39.65253 -38.09153 -36.63146 -34.88207 -34.07745 -33.47966 -31.59878 -29.69226 -28.58602 -27.94555 -26.92697 -25.71858 -24.89815 -23.89324 -22.56199 -21.67294 -20.76388 -19.34887 -18.90385 -18.23944 -17.07185 -16.90934 -16.78373 -16.46291 -16.17714 -15.85553 -15.69499 -15.40446 -15.16715 -15.02273 -14.73932 -14.49115 -14.17470 -14.07979 -13.78404 -13.65134 -13.06809 -13.03367 -12.94536 -12.85771 -12.73604 -12.67710 -12.61562 -12.42507 -12.37842 -12.12180 -12.00973 -11.92249 -11.91074 -11.68178 -11.44752 -11.31589 -11.19493 -10.93842 -10.66372 -9.53545 -9.26436 -9.01682 -7.95495 -5.26114 1.43613 1.47059 1.55377 1.67508 1.94518 2.54312 2.96150 3.37197 3.53590 3.73273 3.82640 3.87068 3.97212 4.11080 4.13693 4.19830 4.24794 4.26688 4.33445 4.42810 4.47301 4.51060 4.55071 4.55334 4.58975 4.70068 4.73816 4.79709 4.83719 4.85820 4.88869 4.93658 5.00558 5.10511 5.11597 5.19863 5.24910 5.26274 5.30952 5.31451 5.42168 5.44301 5.47230 5.57865 5.62108 5.93277 6.12303 6.24934 6.52836 7.29269 7.30122 8.07059 8.29133 9.27996 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.003286 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.055263 B = 8519.556172 C =10280.797773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.059 3.941 4 N -0.551 5.551 5 C 0.023 3.977 6 C 0.049 3.951 7 C 0.498 3.502 8 O -0.575 6.575 9 N -0.610 5.610 10 C 0.099 3.901 11 C -0.123 4.123 12 C -0.080 4.080 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.088 4.088 16 H 0.047 0.953 17 C 0.159 3.841 18 N -0.748 5.748 19 C -0.245 4.245 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.972 5.972 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.132 3.868 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.033 0.967 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.113 0.887 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.022 0.978 48 H 0.029 0.971 49 H 0.369 0.631 50 H 0.250 0.750 51 H 0.069 0.931 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.634 12.288 1.582 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.068 4.068 4 N -0.275 5.275 5 C -0.125 4.125 6 C -0.081 4.081 7 C 0.287 3.713 8 O -0.454 6.454 9 N -0.343 5.343 10 C -0.022 4.022 11 C -0.161 4.161 12 C -0.099 4.099 13 H 0.096 0.904 14 C -0.206 4.206 15 C -0.108 4.108 16 H 0.065 0.935 17 C 0.032 3.968 18 N -0.391 5.391 19 C -0.377 4.377 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.009 3.991 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.104 0.896 39 H 0.150 0.850 40 H 0.130 0.870 41 H 0.107 0.893 42 H 0.131 0.869 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.040 0.960 48 H 0.047 0.953 49 H 0.201 0.799 50 H 0.059 0.941 51 H 0.087 0.913 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.029 11.506 2.007 27.620 hybrid contribution 1.280 -0.715 -0.829 1.685 sum -23.749 10.791 1.178 26.112 Atomic orbital electron populations 1.21688 0.93898 1.02221 1.02416 1.21541 0.96629 0.96096 1.01876 1.22261 0.84585 0.97956 1.01988 1.61578 1.08951 1.20847 1.36168 1.22442 1.00742 1.00204 0.89122 1.22037 0.90071 0.91507 1.04520 1.21397 0.90847 0.83195 0.75846 1.90725 1.72479 1.30282 1.51915 1.48277 1.07779 1.07878 1.70394 1.22064 0.97408 0.81126 1.01598 1.21872 0.93991 1.01214 0.99003 1.21068 0.96567 0.93513 0.98740 0.90389 1.21954 1.01750 1.01893 0.94968 1.21534 0.94090 0.97115 0.98063 0.93469 1.20875 0.91319 0.86911 0.97652 1.42690 1.06711 1.09622 1.80062 1.19670 0.86444 0.95932 1.35677 0.90294 1.25683 1.02698 0.96016 1.02899 1.69881 1.36491 1.02402 1.53524 0.85076 0.79717 0.77557 0.77026 1.21361 1.22274 1.18967 1.21289 0.79865 0.99364 0.98603 0.91875 0.92108 0.92354 0.92665 0.92588 0.89184 0.93512 0.93190 0.90748 0.94823 0.89580 0.85022 0.87031 0.89252 0.86924 0.92340 0.93584 0.89972 0.92583 0.95964 0.95274 0.79900 0.94150 0.91313 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.12 -2.00 5.86 30.59 0.18 -1.82 16 3 C 0.06 0.93 4.96 86.30 0.43 1.36 16 4 N -0.55 -13.00 4.50 -927.02 -4.17 -17.17 16 5 C 0.02 0.60 9.01 127.69 1.15 1.75 16 6 C 0.05 0.99 3.80 85.56 0.32 1.31 16 7 C 0.50 15.59 7.42 87.65 0.65 16.25 16 8 O -0.58 -25.32 13.72 -3.05 -0.04 -25.37 16 9 N -0.61 -16.71 2.98 -819.66 -2.44 -19.15 16 10 C 0.10 1.53 5.85 86.22 0.50 2.04 16 11 C -0.12 -1.89 5.61 30.53 0.17 -1.72 16 12 C -0.08 -1.76 2.71 -10.77 -0.03 -1.79 16 13 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 14 C -0.15 -2.88 8.11 71.98 0.58 -2.30 16 15 C -0.09 -2.96 2.15 -10.70 -0.02 -2.98 16 16 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 17 C 0.16 6.60 5.19 86.38 0.45 7.05 16 18 N -0.75 -40.95 5.38 -343.45 -1.85 -42.80 16 19 C -0.25 -14.49 9.99 84.03 0.84 -13.65 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.08 -4.95 5.50 84.86 0.47 -4.48 16 22 N -0.97 -64.18 13.06 21.65 0.28 -63.89 16 23 Si 0.98 48.52 29.55 68.60 2.03 50.54 16 24 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 25 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.13 4.71 5.05 86.38 0.44 5.14 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.98 6.47 -2.39 -0.02 0.96 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.12 7.93 -2.39 -0.02 1.10 16 34 H 0.05 0.62 8.12 -2.38 -0.02 0.60 16 35 H 0.05 1.76 5.88 -2.39 -0.01 1.75 16 36 H 0.07 1.81 6.30 -2.38 -0.02 1.79 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.09 1.31 7.66 -2.38 -0.02 1.29 16 39 H 0.13 1.80 7.74 -2.39 -0.02 1.78 16 40 H 0.11 1.01 5.93 -2.38 -0.01 1.00 16 41 H 0.09 1.14 6.70 -2.39 -0.02 1.12 16 42 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 1.06 6.57 -2.39 -0.02 1.04 16 45 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.06 1.11 4.99 -2.39 -0.01 1.10 16 47 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.03 1.19 6.73 -2.39 -0.02 1.17 16 49 H 0.37 22.27 6.90 -92.71 -0.64 21.63 16 50 H 0.25 15.97 8.31 -92.71 -0.77 15.20 16 51 H 0.07 2.36 6.69 -2.39 -0.02 2.35 16 52 H 0.04 2.10 6.21 -2.39 -0.01 2.09 16 Total: -1.00 -81.03 388.17 0.91 -80.13 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.25 Total: 32.48 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.85 Total: 5.23 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -8.18 Total: -143.01 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.04 Total: -25.37 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.03 Total: 50.54 kcal Total: -81.03 0.91 -80.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274517.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.332 kcal (2) G-P(sol) polarization free energy of solvation -81.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds