Wall clock time and date at job start Fri Apr 10 2020 18:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46903 * 111.00228 * 66.04241 * 4 3 2 6 6 C 1.46906 * 110.99853 * 189.99913 * 4 3 2 7 7 C 1.50695 * 109.46947 * 170.00153 * 6 4 3 8 8 O 1.21279 * 120.00609 * 359.97438 * 7 6 4 9 9 N 1.34786 * 119.99721 * 180.02562 * 7 6 4 10 10 C 1.46920 * 120.63013 * 359.97438 * 9 7 6 11 11 C 1.53188 * 108.77992 * 126.36933 * 10 9 7 12 12 C 1.53045 * 109.31052 * 54.62875 * 11 10 9 13 13 H 1.09004 * 109.45594 * 58.66263 * 12 11 10 14 14 C 1.52998 * 109.45821 * 178.61516 * 12 11 10 15 15 C 1.53036 * 109.54174 * 298.63869 * 12 11 10 16 16 H 1.08998 * 109.49694 * 301.38249 * 15 12 11 17 17 C 1.53000 * 109.49921 * 181.31342 * 15 12 11 18 18 N 1.46502 * 109.47175 * 174.99906 * 17 15 12 19 19 C 1.36930 * 119.99932 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00414 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99852 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00541 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47252 * 59.99957 * 23 21 19 25 25 H 1.48505 * 109.46969 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47263 * 299.99842 * 23 21 19 27 27 C 1.46925 * 120.62649 * 179.71640 * 9 7 6 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.09006 * 109.46785 * 60.00195 * 5 4 3 36 36 H 1.09005 * 109.47133 * 179.97438 * 5 4 3 37 37 H 1.08990 * 109.47113 * 300.00366 * 5 4 3 38 38 H 1.09006 * 109.46871 * 289.99755 * 6 4 3 39 39 H 1.09000 * 109.47257 * 49.99792 * 6 4 3 40 40 H 1.09006 * 109.58391 * 246.15819 * 10 9 7 41 41 H 1.08998 * 109.58932 * 6.57589 * 10 9 7 42 42 H 1.08998 * 109.50170 * 174.58209 * 11 10 9 43 43 H 1.09000 * 109.49597 * 294.68515 * 11 10 9 44 44 H 1.09000 * 109.47082 * 60.00622 * 14 12 11 45 45 H 1.09007 * 109.46873 * 180.02562 * 14 12 11 46 46 H 1.08993 * 109.47508 * 300.00257 * 14 12 11 47 47 H 1.08996 * 109.47458 * 295.00388 * 17 15 12 48 48 H 1.09004 * 109.46935 * 55.00453 * 17 15 12 49 49 H 0.97003 * 119.99927 * 0.02562 * 18 17 15 50 50 H 0.96996 * 120.00736 * 180.02562 * 22 21 19 51 51 H 1.08993 * 109.59090 * 353.41648 * 27 9 7 52 52 H 1.09001 * 109.58488 * 113.84918 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0349 0.8857 -1.2542 6 6 4.0356 2.7930 0.2375 7 6 5.5219 2.7181 0.4742 8 8 6.0870 1.6453 0.4476 9 7 6.2233 3.8433 0.7164 10 6 5.5529 5.1502 0.7522 11 6 5.8910 5.8417 2.0766 12 6 7.4114 5.9105 2.2379 13 1 7.8412 6.4569 1.3983 14 6 7.7533 6.6315 3.5434 15 6 7.9872 4.4930 2.2724 16 1 7.5397 3.9386 3.0972 17 6 9.5032 4.5622 2.4664 18 7 10.0384 3.2070 2.6188 19 6 11.3816 3.0184 2.8065 20 1 12.0466 3.8687 2.8418 21 6 11.8887 1.7343 2.9503 22 7 11.0785 0.6980 2.9069 23 14 13.7213 1.4770 3.2057 24 1 14.1510 2.1733 4.4449 25 1 14.0045 0.0246 3.3310 26 1 14.4651 2.0284 2.0447 27 6 7.6719 3.7856 0.9551 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.6851 1.4867 -2.0936 36 1 5.1246 0.8979 -1.2282 37 1 3.6853 -0.1400 -1.3711 38 1 3.8373 3.4189 -0.6327 39 1 3.5494 3.2234 1.1130 40 1 5.9016 5.7627 -0.0793 41 1 4.4745 5.0098 0.6782 42 1 5.4792 6.8509 2.0757 43 1 5.4629 5.2743 2.9030 44 1 7.3231 6.0858 4.3832 45 1 8.8362 6.6810 3.6582 46 1 7.3444 7.6415 3.5186 47 1 9.9594 5.0375 1.5981 48 1 9.7289 5.1445 3.3598 49 1 9.4412 2.4433 2.5868 50 1 11.4328 -0.1993 3.0078 51 1 7.9912 2.7453 1.0150 52 1 8.1966 4.2849 0.1405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133274519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:08 Heat of formation + Delta-G solvation = -27.795282 kcal Electronic energy + Delta-G solvation = -27111.687347 eV Core-core repulsion = 23532.146789 eV Total energy + Delta-G solvation = -3579.540558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.28216 -38.44009 -37.07123 -34.93250 -33.63628 -33.37306 -31.84812 -29.90483 -29.00589 -27.61007 -27.12484 -25.44489 -23.73536 -23.18580 -22.65384 -21.18878 -20.94656 -19.83999 -18.80113 -17.23869 -16.88442 -16.06693 -15.97513 -15.50949 -14.95604 -14.81282 -14.52721 -14.34398 -14.30542 -13.86917 -13.55522 -13.39228 -13.29937 -13.04396 -12.91997 -12.54665 -12.53787 -12.23522 -12.02463 -11.88351 -11.76205 -11.74866 -11.51748 -11.40895 -11.26220 -10.95392 -10.84521 -10.77675 -10.74798 -10.55152 -10.25493 -10.11236 -9.91131 -9.56678 -9.43281 -8.79150 -8.46020 -8.36511 -6.82610 -5.65901 -2.95695 2.81693 3.01001 3.49730 3.53557 3.55445 3.80808 4.52088 4.63276 4.67479 4.70616 4.79946 4.86295 4.92548 5.03402 5.05342 5.16602 5.19582 5.24115 5.29353 5.31128 5.39065 5.43752 5.53803 5.58335 5.64925 5.69686 5.70299 5.75183 5.78217 5.84223 5.92631 5.93860 5.99735 6.02975 6.06057 6.16440 6.23937 6.28284 6.36262 6.48861 6.62540 6.67718 6.82791 6.87572 6.93452 6.94759 7.59980 7.76904 8.43023 8.51655 9.62417 10.21073 10.55195 11.56235 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.003267 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.846570 B = 8569.590615 C =10294.632393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.056 3.944 4 N -0.525 5.525 5 C 0.017 3.983 6 C 0.040 3.960 7 C 0.510 3.490 8 O -0.511 6.511 9 N -0.614 5.614 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.084 4.084 13 H 0.070 0.930 14 C -0.148 4.148 15 C -0.101 4.101 16 H 0.073 0.927 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.122 3.878 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.017 0.983 48 H 0.026 0.974 49 H 0.385 0.615 50 H 0.256 0.744 51 H 0.103 0.897 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.934 9.862 -6.805 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.071 4.071 4 N -0.249 5.249 5 C -0.130 4.130 6 C -0.092 4.092 7 C 0.296 3.704 8 O -0.385 6.385 9 N -0.349 5.349 10 C -0.016 4.016 11 C -0.167 4.167 12 C -0.103 4.103 13 H 0.089 0.911 14 C -0.205 4.205 15 C -0.121 4.121 16 H 0.092 0.908 17 C 0.031 3.969 18 N -0.377 5.377 19 C -0.373 4.373 20 H 0.086 0.914 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 C 0.000 4.000 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.036 0.964 36 H 0.108 0.892 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.035 0.965 48 H 0.044 0.956 49 H 0.219 0.781 50 H 0.066 0.934 51 H 0.122 0.878 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.293 8.970 -6.428 23.983 hybrid contribution 0.534 0.243 -0.474 0.754 sum -20.759 9.212 -6.902 23.737 Atomic orbital electron populations 1.21735 0.95673 1.01794 1.01606 1.21539 0.95144 0.96248 1.03126 1.22199 0.86745 0.97653 1.00548 1.61620 1.06981 1.19940 1.36399 1.22604 1.03024 0.99527 0.87883 1.21994 0.93696 0.91332 1.02140 1.20428 0.88846 0.83857 0.77220 1.90741 1.70916 1.27650 1.49157 1.48203 1.09355 1.06203 1.71162 1.21709 0.97112 0.84535 0.98209 1.21988 0.96955 1.00439 0.97347 1.21082 0.94330 0.96260 0.98635 0.91149 1.21881 1.02438 0.99158 0.97025 1.21638 0.97808 0.94918 0.97742 0.90815 1.20718 0.89177 0.89220 0.97794 1.42412 1.06000 1.01676 1.87647 1.19144 0.84245 0.92085 1.41859 0.91352 1.24754 0.97616 0.95590 1.02942 1.69661 1.33504 0.97773 1.56773 0.86297 0.85441 0.76698 0.77888 1.21364 1.21720 1.21338 1.21613 0.77990 1.03985 0.96415 0.92501 0.92685 0.92999 0.91820 0.90839 0.95035 0.90846 0.96420 0.89190 0.91144 0.92344 0.88168 0.91459 0.90410 0.90949 0.91433 0.92771 0.91627 0.93284 0.96499 0.95587 0.78084 0.93439 0.87831 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.07 5.86 -26.73 -0.16 -1.23 16 3 C 0.06 0.52 4.96 -3.82 -0.02 0.50 16 4 N -0.53 -6.44 4.50 -244.36 -1.10 -7.54 16 5 C 0.02 0.21 8.96 60.07 0.54 0.75 16 6 C 0.04 0.44 3.79 -4.98 -0.02 0.42 16 7 C 0.51 7.87 7.39 -10.98 -0.08 7.79 16 8 O -0.51 -10.39 13.75 5.56 0.08 -10.31 16 9 N -0.61 -8.59 2.98 -173.01 -0.52 -9.11 16 10 C 0.11 1.04 6.34 -3.72 -0.02 1.01 16 11 C -0.13 -1.25 5.36 -26.61 -0.14 -1.40 16 12 C -0.08 -1.03 2.23 -90.58 -0.20 -1.23 16 13 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 14 C -0.15 -1.74 8.82 37.16 0.33 -1.41 16 15 C -0.10 -1.67 1.91 -90.70 -0.17 -1.84 16 16 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 17 C 0.16 3.22 5.41 -4.04 -0.02 3.20 16 18 N -0.73 -19.16 5.38 -59.91 -0.32 -19.48 16 19 C -0.24 -6.97 9.99 -15.06 -0.15 -7.13 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.35 13.06 55.49 0.72 -28.63 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.06 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 C 0.12 2.08 5.50 -3.91 -0.02 2.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.57 6.55 -51.93 -0.34 0.23 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 34 H 0.07 0.61 7.93 -51.93 -0.41 0.20 16 35 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.09 1.38 5.83 -51.93 -0.30 1.07 16 37 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 38 H 0.06 0.54 7.92 -51.93 -0.41 0.12 16 39 H 0.10 0.94 7.48 -51.93 -0.39 0.55 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.56 5.93 -51.93 -0.31 0.25 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.85 6.29 -51.93 -0.33 0.53 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.03 0.53 6.14 -51.93 -0.32 0.21 16 49 H 0.38 10.84 6.89 -40.82 -0.28 10.56 16 50 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 51 H 0.10 2.24 6.20 -51.93 -0.32 1.92 16 52 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -34.08 394.35 -9.72 -43.80 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -9.63 Total: 6.90 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 0.13 Total: 0.37 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -1.21 Total: -64.76 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.08 -9.72 -43.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.007 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds