Wall clock time and date at job start Fri Apr 10 2020 18:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46901 * 109.46769 * 180.02562 * 3 2 1 5 5 C 1.46903 * 111.00228 * 66.04241 * 4 3 2 6 6 C 1.46906 * 110.99853 * 189.99913 * 4 3 2 7 7 C 1.50695 * 109.46947 * 170.00153 * 6 4 3 8 8 O 1.21279 * 120.00609 * 359.97438 * 7 6 4 9 9 N 1.34786 * 119.99721 * 180.02562 * 7 6 4 10 10 C 1.46920 * 120.63013 * 359.97438 * 9 7 6 11 11 C 1.53188 * 108.77992 * 126.36933 * 10 9 7 12 12 C 1.53045 * 109.31052 * 54.62875 * 11 10 9 13 13 H 1.09004 * 109.45594 * 58.66263 * 12 11 10 14 14 C 1.52998 * 109.45821 * 178.61516 * 12 11 10 15 15 C 1.53036 * 109.54174 * 298.63869 * 12 11 10 16 16 H 1.08998 * 109.49694 * 301.38249 * 15 12 11 17 17 C 1.53000 * 109.49921 * 181.31342 * 15 12 11 18 18 N 1.46502 * 109.47175 * 174.99906 * 17 15 12 19 19 C 1.36930 * 119.99932 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00414 * 359.97438 * 19 18 17 21 21 C 1.38811 * 119.99852 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00541 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99885 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47252 * 59.99957 * 23 21 19 25 25 H 1.48505 * 109.46969 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47263 * 299.99842 * 23 21 19 27 27 C 1.46925 * 120.62649 * 179.71640 * 9 7 6 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 34 34 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 35 35 H 1.09006 * 109.46785 * 60.00195 * 5 4 3 36 36 H 1.09005 * 109.47133 * 179.97438 * 5 4 3 37 37 H 1.08990 * 109.47113 * 300.00366 * 5 4 3 38 38 H 1.09006 * 109.46871 * 289.99755 * 6 4 3 39 39 H 1.09000 * 109.47257 * 49.99792 * 6 4 3 40 40 H 1.09006 * 109.58391 * 246.15819 * 10 9 7 41 41 H 1.08998 * 109.58932 * 6.57589 * 10 9 7 42 42 H 1.08998 * 109.50170 * 174.58209 * 11 10 9 43 43 H 1.09000 * 109.49597 * 294.68515 * 11 10 9 44 44 H 1.09000 * 109.47082 * 60.00622 * 14 12 11 45 45 H 1.09007 * 109.46873 * 180.02562 * 14 12 11 46 46 H 1.08993 * 109.47508 * 300.00257 * 14 12 11 47 47 H 1.08996 * 109.47458 * 295.00388 * 17 15 12 48 48 H 1.09004 * 109.46935 * 55.00453 * 17 15 12 49 49 H 0.97003 * 119.99927 * 0.02562 * 18 17 15 50 50 H 0.96996 * 120.00736 * 180.02562 * 22 21 19 51 51 H 1.08993 * 109.59090 * 353.41648 * 27 9 7 52 52 H 1.09001 * 109.58488 * 113.84918 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4424 -0.0006 5 6 4.0349 0.8857 -1.2542 6 6 4.0356 2.7930 0.2375 7 6 5.5219 2.7181 0.4742 8 8 6.0870 1.6453 0.4476 9 7 6.2233 3.8433 0.7164 10 6 5.5529 5.1502 0.7522 11 6 5.8910 5.8417 2.0766 12 6 7.4114 5.9105 2.2379 13 1 7.8412 6.4569 1.3983 14 6 7.7533 6.6315 3.5434 15 6 7.9872 4.4930 2.2724 16 1 7.5397 3.9386 3.0972 17 6 9.5032 4.5622 2.4664 18 7 10.0384 3.2070 2.6188 19 6 11.3816 3.0184 2.8065 20 1 12.0466 3.8687 2.8418 21 6 11.8887 1.7343 2.9503 22 7 11.0785 0.6980 2.9069 23 14 13.7213 1.4770 3.2057 24 1 14.1510 2.1733 4.4449 25 1 14.0045 0.0246 3.3310 26 1 14.4651 2.0284 2.0447 27 6 7.6719 3.7856 0.9551 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.6851 1.4867 -2.0936 36 1 5.1246 0.8979 -1.2282 37 1 3.6853 -0.1400 -1.3711 38 1 3.8373 3.4189 -0.6327 39 1 3.5494 3.2234 1.1130 40 1 5.9016 5.7627 -0.0793 41 1 4.4745 5.0098 0.6782 42 1 5.4792 6.8509 2.0757 43 1 5.4629 5.2743 2.9030 44 1 7.3231 6.0858 4.3832 45 1 8.8362 6.6810 3.6582 46 1 7.3444 7.6415 3.5186 47 1 9.9594 5.0375 1.5981 48 1 9.7289 5.1445 3.3598 49 1 9.4412 2.4433 2.5868 50 1 11.4328 -0.1993 3.0078 51 1 7.9912 2.7453 1.0150 52 1 8.1966 4.2849 0.1405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133274519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:07 Heat of formation + Delta-G solvation = -51.561490 kcal Electronic energy + Delta-G solvation = -27112.717927 eV Core-core repulsion = 23532.146789 eV Total energy + Delta-G solvation = -3580.571138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 311.231 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42299 -39.53658 -38.08688 -36.60242 -35.05740 -34.09830 -33.50354 -31.58447 -29.98259 -28.74414 -27.93159 -27.02626 -25.07730 -24.53446 -23.63326 -22.56367 -21.68456 -21.11242 -19.87418 -19.13590 -18.17715 -17.11401 -16.92686 -16.75246 -16.44516 -15.93849 -15.61889 -15.58421 -15.40634 -15.19229 -14.97017 -14.56609 -14.44466 -14.21590 -14.04758 -13.96034 -13.63026 -13.12824 -13.05053 -12.94911 -12.81783 -12.70409 -12.69300 -12.61491 -12.58539 -12.32943 -12.21267 -12.01399 -11.91106 -11.90362 -11.75724 -11.45600 -11.27494 -11.13758 -10.94047 -10.64042 -9.59575 -9.25315 -9.00368 -7.94464 -5.25175 1.43749 1.48451 1.54745 1.66821 1.94411 2.54931 2.96261 3.37859 3.53808 3.71175 3.83065 3.89106 3.97334 4.08517 4.13623 4.19461 4.24762 4.27909 4.32983 4.44423 4.48297 4.51378 4.55550 4.58831 4.61886 4.69391 4.76909 4.80841 4.83606 4.85582 4.89710 4.97691 4.98341 5.08727 5.11696 5.14988 5.24303 5.25293 5.29959 5.31136 5.44035 5.46217 5.47856 5.58540 5.59994 5.94830 6.13067 6.25580 6.52197 7.28611 7.30795 8.08080 8.30145 9.28801 Molecular weight = 311.23amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.003267 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.846570 B = 8569.590615 C =10294.632393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.060 3.940 4 N -0.555 5.555 5 C 0.024 3.976 6 C 0.050 3.950 7 C 0.498 3.502 8 O -0.575 6.575 9 N -0.611 5.611 10 C 0.101 3.899 11 C -0.122 4.122 12 C -0.079 4.079 13 H 0.083 0.917 14 C -0.145 4.145 15 C -0.087 4.087 16 H 0.047 0.953 17 C 0.157 3.843 18 N -0.748 5.748 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.978 3.022 24 H -0.274 1.274 25 H -0.297 1.297 26 H -0.276 1.276 27 C 0.130 3.870 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.038 0.962 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.059 0.941 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.022 0.978 48 H 0.033 0.967 49 H 0.369 0.631 50 H 0.250 0.750 51 H 0.046 0.954 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.097 13.328 -7.287 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.067 4.067 4 N -0.279 5.279 5 C -0.124 4.124 6 C -0.081 4.081 7 C 0.287 3.713 8 O -0.454 6.454 9 N -0.345 5.345 10 C -0.020 4.020 11 C -0.160 4.160 12 C -0.098 4.098 13 H 0.101 0.899 14 C -0.202 4.202 15 C -0.107 4.107 16 H 0.066 0.934 17 C 0.030 3.970 18 N -0.391 5.391 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.623 5.623 23 Si 0.806 3.194 24 H -0.200 1.200 25 H -0.224 1.224 26 H -0.201 1.201 27 C 0.007 3.993 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.201 0.799 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.485 12.540 -6.909 27.505 hybrid contribution 1.190 -0.775 -0.330 1.458 sum -22.295 11.765 -7.239 26.227 Atomic orbital electron populations 1.21688 0.93904 1.02217 1.02416 1.21535 0.96630 0.96135 1.01843 1.22250 0.84598 0.97910 1.01960 1.61549 1.08992 1.20942 1.36459 1.22433 1.00643 1.00276 0.89007 1.22017 0.89971 0.91578 1.04501 1.21409 0.90805 0.83110 0.75948 1.90724 1.72483 1.30186 1.51991 1.48304 1.07928 1.08076 1.70159 1.22132 0.98841 0.82117 0.98955 1.21984 0.94460 1.02594 0.97001 1.21089 0.96437 0.92716 0.99519 0.89894 1.21856 1.01374 1.00736 0.96283 1.21476 0.95066 0.97903 0.96225 0.93435 1.20929 0.91849 0.86305 0.97907 1.42683 1.05258 1.03537 1.87594 1.19635 0.85601 0.92449 1.40128 0.90300 1.25683 1.02486 0.95385 1.03717 1.69868 1.35631 0.97933 1.58889 0.85151 0.79712 0.76148 0.78380 1.20018 1.22351 1.20149 1.21214 0.80664 1.00544 0.96925 0.92368 0.92030 0.91943 0.92484 0.92857 0.93250 0.89500 0.94408 0.92983 0.91049 0.89138 0.85488 0.89453 0.86874 0.86945 0.92239 0.93626 0.93412 0.90104 0.96034 0.94924 0.79919 0.94147 0.93554 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.12 -2.04 5.86 30.59 0.18 -1.86 16 3 C 0.06 0.95 4.96 86.30 0.43 1.38 16 4 N -0.55 -13.08 4.50 -927.03 -4.17 -17.26 16 5 C 0.02 0.61 8.96 127.69 1.14 1.75 16 6 C 0.05 1.00 3.79 85.55 0.32 1.33 16 7 C 0.50 15.59 7.39 87.65 0.65 16.24 16 8 O -0.58 -25.30 13.75 -3.03 -0.04 -25.34 16 9 N -0.61 -16.78 2.98 -819.67 -2.44 -19.22 16 10 C 0.10 1.54 6.34 86.36 0.55 2.09 16 11 C -0.12 -1.88 5.36 30.67 0.16 -1.72 16 12 C -0.08 -1.74 2.23 -10.77 -0.02 -1.76 16 13 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 14 C -0.15 -3.07 8.82 71.98 0.63 -2.43 16 15 C -0.09 -2.92 1.91 -10.85 -0.02 -2.94 16 16 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 17 C 0.16 6.50 5.41 86.38 0.47 6.97 16 18 N -0.75 -41.03 5.38 -343.45 -1.85 -42.88 16 19 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 21 C -0.08 -4.94 5.50 84.86 0.47 -4.47 16 22 N -0.97 -64.39 13.06 21.65 0.28 -64.11 16 23 Si 0.98 48.55 29.55 68.60 2.03 50.57 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 27 C 0.13 4.64 5.50 86.23 0.47 5.12 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 1.00 6.55 -2.39 -0.02 0.98 16 32 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.09 1.16 7.93 -2.39 -0.02 1.14 16 35 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.05 1.71 5.83 -2.38 -0.01 1.69 16 37 H 0.07 1.68 6.47 -2.39 -0.02 1.67 16 38 H 0.09 1.27 7.92 -2.38 -0.02 1.25 16 39 H 0.13 1.87 7.48 -2.39 -0.02 1.85 16 40 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.11 1.00 5.93 -2.39 -0.01 0.98 16 42 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.17 6.29 -2.38 -0.01 1.15 16 46 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.03 1.33 6.14 -2.38 -0.01 1.32 16 49 H 0.37 22.35 6.89 -92.71 -0.64 21.71 16 50 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 51 H 0.05 2.20 6.20 -2.39 -0.01 2.19 16 52 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -81.35 394.35 1.03 -80.32 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: 0.24 Total: 32.92 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 6.99 Total: 4.99 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -8.18 Total: -143.46 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.04 Total: -25.34 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.57 kcal Total: -81.35 1.03 -80.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133274519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.757 kcal (2) G-P(sol) polarization free energy of solvation -81.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds