Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00436 * 2 1 4 4 C 1.34781 * 119.99900 * 179.97438 * 2 1 3 5 5 O 1.21286 * 119.99702 * 359.97438 * 4 2 1 6 6 C 1.50696 * 120.00267 * 180.02562 * 4 2 1 7 7 C 1.52999 * 109.47429 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47175 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47231 * 299.99937 * 8 7 6 10 10 C 1.50706 * 109.47274 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99699 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 N 1.46496 * 109.47238 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00309 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99552 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99656 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46887 * 90.00562 * 20 18 16 22 22 H 1.48505 * 109.47071 * 210.00315 * 20 18 16 23 23 H 1.48498 * 109.47364 * 330.00117 * 20 18 16 24 24 C 1.53004 * 109.47051 * 60.00474 * 9 8 7 25 25 C 1.53002 * 109.46778 * 300.00092 * 6 4 2 26 26 H 1.09003 * 109.47023 * 270.00273 * 1 2 3 27 27 H 1.09002 * 109.46896 * 29.99866 * 1 2 3 28 28 H 1.08997 * 109.47506 * 150.00045 * 1 2 3 29 29 H 1.08998 * 109.47070 * 270.00046 * 3 2 1 30 30 H 1.09001 * 109.46858 * 29.99728 * 3 2 1 31 31 H 1.08998 * 109.47380 * 149.99842 * 3 2 1 32 32 H 1.09001 * 109.47047 * 59.99611 * 6 4 2 33 33 H 1.09010 * 109.46564 * 59.99756 * 7 6 4 34 34 H 1.09004 * 109.46974 * 300.00310 * 7 6 4 35 35 H 1.09004 * 109.46699 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.47124 * 60.00287 * 8 7 6 37 37 H 1.08998 * 109.47794 * 300.00366 * 9 8 7 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 39 39 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 40 40 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 41 41 H 1.09000 * 109.46986 * 299.99958 * 14 13 12 42 42 H 1.09002 * 109.46857 * 60.00093 * 14 13 12 43 43 H 0.97005 * 119.99809 * 0.02562 * 15 14 13 44 44 H 0.97000 * 119.99521 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47257 * 59.99678 * 24 9 8 46 46 H 1.09001 * 109.47281 * 179.97438 * 24 9 8 47 47 H 1.09001 * 109.46939 * 299.99585 * 25 6 4 48 48 H 1.08991 * 109.47217 * 60.00061 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5323 -2.2176 0.0015 6 6 3.6458 -1.1673 0.0011 7 6 4.1558 -2.6098 0.0023 8 6 5.6857 -2.6099 0.0022 9 6 6.1957 -1.8897 -1.2476 10 6 7.7028 -1.8903 -1.2479 11 8 8.3092 -2.4155 -0.3383 12 7 8.3766 -1.3072 -2.2590 13 6 9.8417 -1.3083 -2.2597 14 6 10.3517 -0.5935 -3.5126 15 7 11.8167 -0.5940 -3.5129 16 6 12.5014 -0.0061 -4.5428 17 1 11.9614 0.4584 -5.3546 18 6 13.8895 -0.0071 -4.5433 19 7 14.5476 -0.5736 -3.5542 20 14 14.8235 0.7944 -5.9486 21 1 15.0722 2.2226 -5.6266 22 1 16.1205 0.0974 -6.1421 23 1 14.0204 0.7002 -7.1941 24 6 5.6858 -0.4471 -1.2487 25 6 4.1563 -0.4464 -1.2481 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 2.3792 1.5833 -1.0276 30 1 1.6085 2.0283 0.5138 31 1 3.1499 1.1383 0.5138 32 1 4.0088 -0.6533 0.8911 33 1 3.7927 -3.1242 -0.8876 34 1 3.7920 -3.1231 0.8925 35 1 6.0490 -3.6376 0.0026 36 1 6.0491 -2.0954 0.8917 37 1 5.8324 -2.4041 -2.1372 38 1 7.8916 -0.8907 -2.9886 39 1 10.2057 -0.7904 -1.3723 40 1 10.2043 -2.3362 -2.2547 41 1 9.9876 -1.1114 -4.3999 42 1 9.9891 0.4344 -3.5174 43 1 12.3017 -1.0109 -2.7836 44 1 15.5176 -0.5739 -3.5544 45 1 6.0492 0.0673 -0.3592 46 1 6.0495 0.0661 -2.1389 47 1 3.7932 -0.9604 -2.1381 48 1 3.7930 0.5812 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147568565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = -75.437265 kcal Electronic energy + Delta-G solvation = -25737.149971 eV Core-core repulsion = 22019.710408 eV Total energy + Delta-G solvation = -3717.439564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.93017 -39.79005 -37.46256 -36.04725 -35.66486 -33.86432 -32.09097 -31.29402 -30.89001 -28.48657 -27.77223 -26.73866 -24.37954 -23.27965 -22.91140 -21.48920 -20.93492 -19.84052 -19.54748 -17.44321 -17.32514 -16.93304 -16.58947 -16.23845 -15.71224 -15.43748 -14.80122 -14.57941 -14.44615 -14.33311 -14.20020 -13.61167 -13.37071 -13.24154 -13.17727 -13.10852 -12.94536 -12.84070 -12.59960 -12.48153 -12.23298 -11.69488 -11.62500 -11.41477 -11.33054 -11.11622 -10.84554 -10.82112 -10.77044 -10.43832 -10.13515 -10.06861 -9.82954 -9.55391 -9.14840 -8.98912 -8.81728 -7.00769 -5.80872 -3.11647 2.24920 2.56747 2.73962 3.27301 3.41138 3.46275 3.48182 4.01233 4.24599 4.32510 4.51948 4.56410 4.61977 4.76815 4.78582 4.79853 4.87847 4.96495 5.02667 5.09379 5.15655 5.17739 5.19761 5.35750 5.39961 5.48891 5.51359 5.59376 5.62120 5.71341 5.77418 5.78924 5.92643 5.95897 5.97548 6.02471 6.15079 6.18420 6.49469 6.69391 6.74860 6.87800 7.63586 7.64601 7.77389 8.34543 8.37313 9.47931 10.02896 10.37524 11.41649 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.002029 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.506812 B =13799.378231 C =14459.464348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.624 5.624 3 C 0.074 3.926 4 C 0.517 3.483 5 O -0.538 6.538 6 C -0.107 4.107 7 C -0.098 4.098 8 C -0.099 4.099 9 C -0.108 4.108 10 C 0.513 3.487 11 O -0.541 6.541 12 N -0.723 5.723 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.109 4.109 25 C -0.120 4.120 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.486 3.563 7.187 30.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.359 5.359 3 C -0.069 4.069 4 C 0.306 3.694 5 O -0.414 6.414 6 C -0.128 4.128 7 C -0.136 4.136 8 C -0.137 4.137 9 C -0.129 4.129 10 C 0.298 3.702 11 O -0.418 6.418 12 N -0.375 5.375 13 C -0.014 4.014 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.578 5.578 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.147 4.147 25 C -0.157 4.157 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -29.312 2.707 7.690 30.425 hybrid contribution 0.529 0.696 -0.911 1.263 sum -28.783 3.404 6.778 29.766 Atomic orbital electron populations 1.21638 0.79274 1.03135 1.01831 1.47776 1.07088 1.06560 1.74449 1.22020 0.97573 0.85209 1.02109 1.20841 0.90320 0.82988 0.75273 1.90698 1.70425 1.31041 1.49230 1.21389 0.90739 0.99815 1.00837 1.21379 0.94831 0.93748 1.03619 1.21359 0.93981 1.01519 0.96791 1.21387 0.91789 0.98251 1.01500 1.20586 0.89733 0.77965 0.81867 1.90710 1.70374 1.44779 1.35911 1.45977 1.07972 1.58560 1.24959 1.21570 0.78158 1.01686 0.99945 1.20752 0.87163 0.96783 0.93621 1.42194 0.98778 1.69286 1.27215 1.19189 0.89047 1.29254 1.00050 0.91041 1.24790 0.96406 1.01272 0.98421 1.69670 1.06985 1.48912 1.32253 0.86144 0.79428 0.78784 0.81517 1.21634 1.21681 1.20716 1.21516 0.94868 0.94900 1.03369 1.21792 0.95779 1.01250 0.96905 0.92797 0.91239 0.90529 0.91884 0.91017 0.90356 0.88313 0.91069 0.90885 0.90615 0.90992 0.88443 0.76766 0.91358 0.91374 0.95863 0.95864 0.78005 0.93356 0.90907 0.90688 0.91066 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.47 10.44 59.84 0.62 1.10 16 2 N -0.62 -4.14 3.27 -189.52 -0.62 -4.76 16 3 C 0.07 0.25 8.80 59.85 0.53 0.78 16 4 C 0.52 4.73 7.08 -10.99 -0.08 4.65 16 5 O -0.54 -6.99 15.56 5.55 0.09 -6.90 16 6 C -0.11 -0.77 1.72 -91.77 -0.16 -0.93 16 7 C -0.10 -0.85 4.49 -26.73 -0.12 -0.97 16 8 C -0.10 -0.95 4.49 -26.74 -0.12 -1.07 16 9 C -0.11 -0.99 2.53 -91.77 -0.23 -1.22 16 10 C 0.51 6.90 7.16 -10.98 -0.08 6.82 16 11 O -0.54 -9.65 15.98 5.56 0.09 -9.56 16 12 N -0.72 -9.42 5.45 -60.29 -0.33 -9.74 16 13 C 0.11 1.87 5.79 -4.04 -0.02 1.84 16 14 C 0.15 2.80 6.37 -4.04 -0.03 2.77 16 15 N -0.73 -18.45 5.60 -59.91 -0.34 -18.79 16 16 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 17 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 18 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 20 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C -0.11 -0.74 5.10 -26.75 -0.14 -0.88 16 25 C -0.12 -0.69 4.84 -26.75 -0.13 -0.82 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 28 H 0.08 0.55 7.42 -51.93 -0.39 0.17 16 29 H 0.06 0.17 6.95 -51.93 -0.36 -0.20 16 30 H 0.07 0.15 8.07 -51.93 -0.42 -0.27 16 31 H 0.08 0.23 6.00 -51.93 -0.31 -0.08 16 32 H 0.10 0.61 7.40 -51.93 -0.38 0.22 16 33 H 0.07 0.67 8.10 -51.92 -0.42 0.24 16 34 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.40 4.00 7.90 -40.82 -0.32 3.68 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.39 10.37 7.67 -40.82 -0.31 10.06 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.44 7.57 -51.93 -0.39 0.05 16 47 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.33 4.53 -51.93 -0.24 0.09 16 LS Contribution 379.36 15.07 5.72 5.72 Total: -1.00 -35.72 379.36 -8.04 -43.76 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.15 Total: 5.88 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.20 Total: 4.68 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.56 Total: -60.75 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.18 Total: -16.46 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.72 -8.04 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147568565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.676 kcal (2) G-P(sol) polarization free energy of solvation -35.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds