Wall clock time and date at job start Fri Apr 10 2020 18:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00436 * 2 1 4 4 C 1.34781 * 119.99900 * 179.97438 * 2 1 3 5 5 O 1.21286 * 119.99702 * 359.97438 * 4 2 1 6 6 C 1.50696 * 120.00267 * 180.02562 * 4 2 1 7 7 C 1.52999 * 109.47429 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.47175 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47231 * 299.99937 * 8 7 6 10 10 C 1.50706 * 109.47274 * 180.02562 * 9 8 7 11 11 O 1.21281 * 119.99699 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00080 * 180.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 N 1.46496 * 109.47238 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00309 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99552 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31619 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99656 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46887 * 90.00562 * 20 18 16 22 22 H 1.48505 * 109.47071 * 210.00315 * 20 18 16 23 23 H 1.48498 * 109.47364 * 330.00117 * 20 18 16 24 24 C 1.53004 * 109.47051 * 60.00474 * 9 8 7 25 25 C 1.53002 * 109.46778 * 300.00092 * 6 4 2 26 26 H 1.09003 * 109.47023 * 270.00273 * 1 2 3 27 27 H 1.09002 * 109.46896 * 29.99866 * 1 2 3 28 28 H 1.08997 * 109.47506 * 150.00045 * 1 2 3 29 29 H 1.08998 * 109.47070 * 270.00046 * 3 2 1 30 30 H 1.09001 * 109.46858 * 29.99728 * 3 2 1 31 31 H 1.08998 * 109.47380 * 149.99842 * 3 2 1 32 32 H 1.09001 * 109.47047 * 59.99611 * 6 4 2 33 33 H 1.09010 * 109.46564 * 59.99756 * 7 6 4 34 34 H 1.09004 * 109.46974 * 300.00310 * 7 6 4 35 35 H 1.09004 * 109.46699 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.47124 * 60.00287 * 8 7 6 37 37 H 1.08998 * 109.47794 * 300.00366 * 9 8 7 38 38 H 0.97005 * 120.00161 * 359.72088 * 12 10 9 39 39 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 40 40 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 41 41 H 1.09000 * 109.46986 * 299.99958 * 14 13 12 42 42 H 1.09002 * 109.46857 * 60.00093 * 14 13 12 43 43 H 0.97005 * 119.99809 * 0.02562 * 15 14 13 44 44 H 0.97000 * 119.99521 * 180.02562 * 19 18 16 45 45 H 1.08993 * 109.47257 * 59.99678 * 24 9 8 46 46 H 1.09001 * 109.47281 * 179.97438 * 24 9 8 47 47 H 1.09001 * 109.46939 * 299.99585 * 25 6 4 48 48 H 1.08991 * 109.47217 * 60.00061 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5323 -2.2176 0.0015 6 6 3.6458 -1.1673 0.0011 7 6 4.1558 -2.6098 0.0023 8 6 5.6857 -2.6099 0.0022 9 6 6.1957 -1.8897 -1.2476 10 6 7.7028 -1.8903 -1.2479 11 8 8.3092 -2.4155 -0.3383 12 7 8.3766 -1.3072 -2.2590 13 6 9.8417 -1.3083 -2.2597 14 6 10.3517 -0.5935 -3.5126 15 7 11.8167 -0.5940 -3.5129 16 6 12.5014 -0.0061 -4.5428 17 1 11.9614 0.4584 -5.3546 18 6 13.8895 -0.0071 -4.5433 19 7 14.5476 -0.5736 -3.5542 20 14 14.8235 0.7944 -5.9486 21 1 15.0722 2.2226 -5.6266 22 1 16.1205 0.0974 -6.1421 23 1 14.0204 0.7002 -7.1941 24 6 5.6858 -0.4471 -1.2487 25 6 4.1563 -0.4464 -1.2481 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 2.3792 1.5833 -1.0276 30 1 1.6085 2.0283 0.5138 31 1 3.1499 1.1383 0.5138 32 1 4.0088 -0.6533 0.8911 33 1 3.7927 -3.1242 -0.8876 34 1 3.7920 -3.1231 0.8925 35 1 6.0490 -3.6376 0.0026 36 1 6.0491 -2.0954 0.8917 37 1 5.8324 -2.4041 -2.1372 38 1 7.8916 -0.8907 -2.9886 39 1 10.2057 -0.7904 -1.3723 40 1 10.2043 -2.3362 -2.2547 41 1 9.9876 -1.1114 -4.3999 42 1 9.9891 0.4344 -3.5174 43 1 12.3017 -1.0109 -2.7836 44 1 15.5176 -0.5739 -3.5544 45 1 6.0492 0.0673 -0.3592 46 1 6.0495 0.0661 -2.1389 47 1 3.7932 -0.9604 -2.1381 48 1 3.7930 0.5812 -1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147568565.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:35 Heat of formation + Delta-G solvation = -101.495422 kcal Electronic energy + Delta-G solvation = -25738.279938 eV Core-core repulsion = 22019.710408 eV Total energy + Delta-G solvation = -3718.569530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.64997 -40.76773 -38.28615 -37.24016 -36.62948 -35.48987 -33.31898 -32.52987 -31.75037 -29.46406 -28.75109 -27.35560 -25.79648 -24.52196 -23.57942 -23.01607 -21.80628 -20.74527 -20.13007 -19.31569 -18.13345 -17.87472 -17.27796 -16.92550 -16.89318 -16.48091 -16.46244 -15.70442 -15.45860 -15.16400 -14.99749 -14.88960 -14.82843 -14.54236 -14.11297 -13.83345 -13.53989 -13.43051 -13.22292 -13.06282 -13.03728 -13.00995 -12.68618 -12.65081 -12.53769 -12.43054 -12.23974 -12.07355 -12.00907 -11.85373 -11.43700 -11.08469 -10.98092 -10.90014 -10.57501 -10.10129 -9.65292 -9.05612 -7.96105 -5.27421 1.49207 1.51579 1.59993 1.60019 1.65840 2.07729 2.14770 2.59001 3.38181 3.41421 3.60782 3.71380 3.81993 4.04579 4.10526 4.11298 4.18493 4.24572 4.26393 4.36298 4.41542 4.43841 4.50255 4.53613 4.54584 4.60906 4.76334 4.84542 4.87670 4.93781 4.94074 5.05349 5.06041 5.15224 5.15523 5.19365 5.23406 5.33675 5.40667 5.46240 5.50904 5.53829 6.24640 6.35402 6.59086 7.15757 7.28679 7.30830 8.03245 8.25725 9.27520 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.029513 B = 0.002029 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.506812 B =13799.378231 C =14459.464348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.621 5.621 3 C 0.064 3.936 4 C 0.511 3.489 5 O -0.588 6.588 6 C -0.102 4.102 7 C -0.090 4.090 8 C -0.093 4.093 9 C -0.098 4.098 10 C 0.512 3.488 11 O -0.589 6.589 12 N -0.709 5.709 13 C 0.127 3.873 14 C 0.149 3.851 15 N -0.748 5.748 16 C -0.247 4.247 17 H 0.084 0.916 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.980 3.020 21 H -0.285 1.285 22 H -0.298 1.298 23 H -0.265 1.265 24 C -0.104 4.104 25 C -0.111 4.111 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.116 0.884 38 H 0.417 0.583 39 H 0.052 0.948 40 H 0.048 0.952 41 H 0.036 0.964 42 H 0.041 0.959 43 H 0.373 0.627 44 H 0.252 0.748 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.071 0.929 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.173 6.029 5.692 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.354 5.354 3 C -0.077 4.077 4 C 0.300 3.700 5 O -0.468 6.468 6 C -0.123 4.123 7 C -0.128 4.128 8 C -0.132 4.132 9 C -0.119 4.119 10 C 0.300 3.700 11 O -0.469 6.469 12 N -0.362 5.362 13 C 0.002 3.998 14 C 0.022 3.978 15 N -0.391 5.391 16 C -0.378 4.378 17 H 0.102 0.898 18 C -0.271 4.271 19 N -0.621 5.621 20 Si 0.808 3.192 21 H -0.212 1.212 22 H -0.225 1.225 23 H -0.190 1.190 24 C -0.142 4.142 25 C -0.148 4.148 26 H 0.074 0.926 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.134 0.866 38 H 0.254 0.746 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.089 0.911 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -31.076 5.242 6.152 32.110 hybrid contribution 0.944 -0.067 -0.399 1.027 sum -30.132 5.175 5.753 31.109 Atomic orbital electron populations 1.21729 0.78921 1.03471 1.02120 1.47920 1.07630 1.07011 1.72822 1.22299 0.97965 0.83934 1.03539 1.21153 0.90990 0.83036 0.74814 1.90677 1.71383 1.32917 1.51854 1.21370 0.89644 0.98858 1.02458 1.21251 0.93846 0.95067 1.02680 1.21274 0.94530 1.00449 0.96899 1.21407 0.88214 1.00470 1.01855 1.21358 0.91373 0.76523 0.80766 1.90697 1.71686 1.46773 1.37778 1.45775 1.06217 1.58546 1.25673 1.21124 0.80518 0.99905 0.98266 1.20857 0.84044 0.97966 0.94887 1.42447 1.01255 1.69058 1.26370 1.19659 0.89553 1.28133 1.00502 0.89793 1.25689 0.97605 1.02675 1.01144 1.69842 1.06777 1.51028 1.34482 0.85052 0.77628 0.77529 0.78979 1.21223 1.22455 1.19007 1.21539 0.95496 0.92790 1.04344 1.21772 0.94729 1.02477 0.95837 0.92578 0.88409 0.92646 0.90276 0.89273 0.89567 0.86912 0.91784 0.92199 0.92491 0.91806 0.86598 0.74555 0.92927 0.93370 0.94589 0.94148 0.79539 0.93960 0.90888 0.88820 0.91066 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.78 10.44 127.77 1.33 2.12 16 2 N -0.62 -6.92 3.27 -871.90 -2.85 -9.77 16 3 C 0.06 0.21 8.80 127.77 1.12 1.33 16 4 C 0.51 8.80 7.08 87.66 0.62 9.42 16 5 O -0.59 -15.55 15.56 -3.05 -0.05 -15.60 16 6 C -0.10 -1.30 1.72 -11.54 -0.02 -1.32 16 7 C -0.09 -1.55 4.49 30.59 0.14 -1.41 16 8 C -0.09 -1.78 4.49 30.59 0.14 -1.64 16 9 C -0.10 -1.63 2.53 -11.54 -0.03 -1.66 16 10 C 0.51 13.26 7.16 87.66 0.63 13.89 16 11 O -0.59 -21.33 15.98 -3.03 -0.05 -21.37 16 12 N -0.71 -17.21 5.45 -463.05 -2.52 -19.74 16 13 C 0.13 4.24 5.79 86.38 0.50 4.74 16 14 C 0.15 5.52 6.37 86.38 0.55 6.07 16 15 N -0.75 -37.63 5.60 -343.46 -1.92 -39.55 16 16 C -0.25 -13.50 9.99 84.03 0.84 -12.66 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 18 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 19 N -0.97 -59.72 13.06 21.65 0.28 -59.44 16 20 Si 0.98 45.34 29.55 68.60 2.03 47.37 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.21 16 22 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 24 C -0.10 -1.07 5.10 30.58 0.16 -0.91 16 25 C -0.11 -0.90 4.84 30.58 0.15 -0.76 16 26 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.38 8.07 -2.39 -0.02 0.36 16 28 H 0.05 0.79 7.42 -2.39 -0.02 0.78 16 29 H 0.08 0.05 6.95 -2.39 -0.02 0.04 16 30 H 0.09 0.03 8.07 -2.39 -0.02 0.01 16 31 H 0.09 0.17 6.00 -2.39 -0.01 0.16 16 32 H 0.11 1.13 7.40 -2.39 -0.02 1.11 16 33 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 34 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 35 H 0.06 1.28 8.10 -2.39 -0.02 1.26 16 36 H 0.06 1.31 8.10 -2.39 -0.02 1.30 16 37 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.42 7.03 7.90 -92.70 -0.73 6.30 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.37 20.43 7.67 -92.70 -0.71 19.72 16 44 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.09 0.68 7.57 -2.39 -0.02 0.66 16 47 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.11 0.38 4.53 -2.39 -0.01 0.37 16 Total: -1.00 -79.50 379.36 1.02 -78.48 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.48 Total: 26.46 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 6.59 Total: 13.17 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -7.02 Total: -128.50 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.10 Total: -36.97 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -79.50 1.02 -78.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147568565.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.016 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds