Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99892 * 2 1 4 4 C 1.46897 * 110.99654 * 123.95170 * 2 1 3 5 5 C 1.53002 * 109.47266 * 66.04725 * 4 2 1 6 6 O 1.42901 * 109.46986 * 64.99392 * 5 4 2 7 7 C 1.42904 * 113.99824 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46896 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00056 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99789 * 180.02562 * 8 7 6 11 11 C 1.47886 * 134.34002 * 180.02562 * 10 8 7 12 12 C 1.52379 * 85.59207 * 156.47486 * 11 10 8 13 13 C 1.47889 * 134.34151 * 359.94259 * 10 8 7 14 14 C 1.53646 * 116.39883 * 141.34592 * 12 11 10 15 15 C 1.54599 * 102.73313 * 162.91833 * 14 12 11 16 16 N 1.47141 * 107.36616 * 339.24610 * 15 14 12 17 17 C 1.36936 * 125.58666 * 179.10721 * 16 15 14 18 18 H 1.07995 * 119.99439 * 174.73966 * 17 16 15 19 19 C 1.38808 * 120.00313 * 354.74040 * 17 16 15 20 20 N 1.31625 * 120.00076 * 7.05338 * 19 17 16 21 21 Si 1.86801 * 120.00160 * 187.05290 * 19 17 16 22 22 H 1.48500 * 109.47181 * 94.98549 * 21 19 17 23 23 H 1.48494 * 109.46965 * 214.98637 * 21 19 17 24 24 H 1.48505 * 109.46994 * 334.98795 * 21 19 17 25 25 C 1.47725 * 108.82181 * 359.07255 * 16 15 14 26 26 H 1.09006 * 109.47072 * 296.04922 * 1 2 3 27 27 H 1.08996 * 109.47383 * 56.04157 * 1 2 3 28 28 H 1.08996 * 109.47614 * 176.04682 * 1 2 3 29 29 H 1.09001 * 109.46733 * 183.95403 * 3 2 1 30 30 H 1.08995 * 109.47128 * 303.95228 * 3 2 1 31 31 H 1.08993 * 109.47113 * 63.95509 * 3 2 1 32 32 H 1.08999 * 109.47378 * 306.04462 * 4 2 1 33 33 H 1.09008 * 109.46963 * 186.04185 * 4 2 1 34 34 H 1.08997 * 109.47128 * 305.00175 * 5 4 2 35 35 H 1.08998 * 109.47569 * 184.99215 * 5 4 2 36 36 H 1.09000 * 109.47044 * 60.00366 * 7 6 5 37 37 H 1.09000 * 109.47295 * 300.00172 * 7 6 5 38 38 H 1.09001 * 113.85784 * 42.31343 * 11 10 8 39 39 H 1.08995 * 113.97352 * 270.65390 * 11 10 8 40 40 H 1.09003 * 113.84529 * 89.36530 * 13 10 8 41 41 H 1.08995 * 113.85959 * 317.69752 * 13 10 8 42 42 H 1.09000 * 110.75904 * 44.60973 * 14 12 11 43 43 H 1.08999 * 110.76158 * 281.23303 * 14 12 11 44 44 H 1.08998 * 109.86529 * 98.69001 * 15 14 12 45 45 H 1.08998 * 109.86930 * 219.66141 * 15 14 12 46 46 H 0.96995 * 120.00011 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.39664 * 141.24526 * 25 16 15 48 48 H 1.08996 * 110.40059 * 263.65852 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 8 2.2955 -2.7696 -0.1800 7 6 2.0212 -4.1499 -0.4279 8 6 2.7695 -4.5978 -1.6570 9 8 3.4692 -3.8124 -2.2608 10 7 2.6612 -5.8712 -2.0852 11 6 3.2340 -6.6339 -3.2153 12 6 2.9781 -7.8680 -2.3589 13 6 1.9235 -7.0619 -1.6109 14 6 2.4835 -9.1213 -3.0972 15 6 2.7531 -10.2483 -2.0739 16 7 3.7691 -9.7525 -1.1321 17 6 4.2698 -10.4455 -0.0624 18 1 5.0762 -10.0277 0.5219 19 6 3.7410 -11.6849 0.2708 20 7 2.8567 -12.2569 -0.5188 21 14 4.2841 -12.5410 1.8397 22 1 3.3234 -12.2333 2.9295 23 1 4.3239 -14.0082 1.6146 24 1 5.6366 -12.0618 2.2223 25 6 4.1610 -8.3849 -1.5301 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8523 28 1 -0.3634 -1.0251 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9232 32 1 1.5611 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 0.5531 -2.3389 0.8433 35 1 1.9438 -2.7964 1.8557 36 1 0.9510 -4.2854 -0.5842 37 1 2.3414 -4.7436 0.4284 38 1 4.2903 -6.4321 -3.3931 39 1 2.6339 -6.5961 -4.1244 40 1 0.9206 -7.1540 -2.0280 41 1 1.9512 -7.1960 -0.5296 42 1 3.0566 -9.2833 -4.0102 43 1 1.4185 -9.0454 -3.3167 44 1 1.8356 -10.4880 -1.5366 45 1 3.1233 -11.1351 -2.5883 46 1 2.4875 -13.1231 -0.2861 47 1 4.3092 -7.7605 -0.6490 48 1 5.0669 -8.4103 -2.1357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148604297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = 1.268732 kcal Electronic energy + Delta-G solvation = -26193.821899 eV Core-core repulsion = 22479.708557 eV Total energy + Delta-G solvation = -3714.113342 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50826 -38.87126 -37.95528 -36.60306 -35.53478 -32.26776 -30.72326 -29.79602 -28.76008 -27.87593 -27.11917 -26.12283 -25.41655 -24.27164 -23.42259 -21.26192 -20.32409 -19.32188 -18.26638 -17.17977 -16.93836 -16.72221 -16.52345 -15.75501 -15.62325 -15.11916 -15.09078 -14.76032 -14.67772 -14.33247 -13.76586 -13.53362 -13.23558 -12.82245 -12.65779 -12.60648 -12.45904 -12.27068 -12.17160 -11.99358 -11.86166 -11.80494 -11.60423 -11.13471 -11.08745 -10.93508 -10.79444 -10.40206 -10.17590 -10.10173 -9.90199 -9.76594 -9.69287 -9.37950 -8.60683 -8.57373 -8.49835 -6.86599 -5.75857 -3.08099 2.64379 2.79271 3.37644 3.43641 3.45322 3.63184 3.75414 4.43256 4.52075 4.69398 4.77924 4.78600 4.92391 4.98255 5.04647 5.06901 5.13261 5.17582 5.20377 5.24326 5.29826 5.35017 5.46850 5.50983 5.57904 5.62520 5.65334 5.66092 5.73047 5.74410 5.82147 5.93021 6.16016 6.21454 6.45768 6.51123 6.66089 6.70384 6.71352 6.74550 7.03558 7.52567 7.58659 7.79515 7.85080 8.21884 8.33875 9.18629 9.78487 10.44595 11.36129 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002618 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.379520 B =10693.530746 C =11560.990223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.026 3.974 4 C 0.057 3.943 5 C 0.063 3.937 6 O -0.347 6.347 7 C 0.049 3.951 8 C 0.536 3.464 9 O -0.527 6.527 10 N -0.643 5.643 11 C 0.126 3.874 12 C -0.104 4.104 13 C 0.120 3.880 14 C -0.131 4.131 15 C 0.177 3.823 16 N -0.605 5.605 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.162 3.838 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.022 0.978 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.252 0.748 47 H 0.040 0.960 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 19.593 0.522 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.262 5.262 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.015 4.015 6 O -0.265 6.265 7 C -0.031 4.031 8 C 0.325 3.675 9 O -0.403 6.403 10 N -0.380 5.380 11 C 0.003 3.997 12 C -0.105 4.105 13 C -0.003 4.003 14 C -0.170 4.170 15 C 0.053 3.947 16 N -0.332 5.332 17 C -0.356 4.356 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C 0.035 3.965 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.474 19.920 -0.160 20.946 hybrid contribution -0.361 -0.358 1.780 1.852 sum -6.836 19.561 1.620 20.785 Atomic orbital electron populations 1.22450 0.87585 1.02362 1.00275 1.61886 1.07682 1.13663 1.42980 1.22375 1.01102 0.88535 1.00190 1.22152 1.01614 0.91937 0.91383 1.22606 0.96444 0.93934 0.88476 1.88107 1.69926 1.22165 1.46252 1.22103 0.99320 0.84927 0.96734 1.19819 0.82063 0.80087 0.85572 1.90715 1.39954 1.51667 1.57921 1.50164 1.49197 1.08218 1.30439 1.22980 0.99896 0.86472 0.90308 1.22452 0.97800 0.93541 0.96738 1.23082 0.95966 0.80125 1.01090 1.22671 0.99923 0.95301 0.99129 1.21214 0.93143 0.91905 0.88455 1.44574 1.46709 1.10947 1.30959 1.19046 1.13880 0.99549 1.03156 0.90475 1.24803 0.99147 0.97515 0.98824 1.69972 1.33176 1.16935 1.36639 0.86135 0.77946 0.78781 0.83146 1.21651 1.21780 1.20647 1.21049 0.92610 0.87443 0.95351 0.95884 0.91322 0.91237 0.91151 0.91335 0.95952 0.93259 0.89572 0.93117 0.92642 0.90743 0.90450 0.90026 0.89773 0.89624 0.89510 0.91682 0.91709 0.93326 0.94030 0.93754 0.94159 0.95724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.33 60.07 0.56 0.74 16 2 N -0.54 -5.52 4.97 -251.26 -1.25 -6.77 16 3 C 0.03 0.22 9.57 60.07 0.57 0.79 16 4 C 0.06 0.53 5.34 -3.82 -0.02 0.51 16 5 C 0.06 0.62 5.99 37.16 0.22 0.84 16 6 O -0.35 -4.91 9.82 -55.14 -0.54 -5.45 16 7 C 0.05 0.63 6.16 36.01 0.22 0.85 16 8 C 0.54 8.78 8.13 -10.98 -0.09 8.69 16 9 O -0.53 -10.79 17.22 -14.35 -0.25 -11.04 16 10 N -0.64 -9.61 3.62 -186.88 -0.68 -10.28 16 11 C 0.13 1.80 8.21 -3.60 -0.03 1.77 16 12 C -0.10 -1.65 0.99 -154.85 -0.15 -1.80 16 13 C 0.12 1.67 7.92 -3.61 -0.03 1.64 16 14 C -0.13 -2.18 6.36 -25.56 -0.16 -2.34 16 15 C 0.18 4.01 5.40 -2.85 -0.02 4.00 16 16 N -0.61 -14.71 3.41 -170.50 -0.58 -15.29 16 17 C -0.23 -6.16 10.26 -15.06 -0.15 -6.32 16 18 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 20 N -0.92 -26.14 10.35 55.49 0.57 -25.57 16 21 Si 0.91 21.60 29.56 -169.99 -5.02 16.57 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.16 3.20 6.63 -3.16 -0.02 3.18 16 26 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 28 H 0.07 0.58 6.37 -51.93 -0.33 0.25 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.52 8.12 -51.93 -0.42 0.09 16 31 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 33 H 0.09 0.84 8.06 -51.92 -0.42 0.42 16 34 H 0.05 0.44 6.34 -51.93 -0.33 0.11 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.20 8.12 -51.93 -0.42 0.78 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.02 8.04 -51.93 -0.42 0.60 16 41 H 0.09 1.25 8.12 -51.93 -0.42 0.83 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 44 H 0.05 1.21 7.30 -51.93 -0.38 0.83 16 45 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 47 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16 48 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 385.83 15.07 5.81 5.81 Total: -1.00 -33.64 385.83 -9.68 -43.32 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.56 Total: -3.59 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 0.81 Total: 12.28 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -1.93 Total: -57.91 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.79 Total: -16.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.64 -9.68 -43.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148604297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.593 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds