Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99892 * 2 1 4 4 C 1.46897 * 110.99654 * 123.95170 * 2 1 3 5 5 C 1.53002 * 109.47266 * 66.04725 * 4 2 1 6 6 O 1.42901 * 109.46986 * 64.99392 * 5 4 2 7 7 C 1.42904 * 113.99824 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46896 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00056 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99789 * 180.02562 * 8 7 6 11 11 C 1.47886 * 134.34002 * 180.02562 * 10 8 7 12 12 C 1.52379 * 85.59207 * 156.47486 * 11 10 8 13 13 C 1.47889 * 134.34151 * 359.94259 * 10 8 7 14 14 C 1.53646 * 116.39883 * 141.34592 * 12 11 10 15 15 C 1.54599 * 102.73313 * 162.91833 * 14 12 11 16 16 N 1.47141 * 107.36616 * 339.24610 * 15 14 12 17 17 C 1.36936 * 125.58666 * 179.10721 * 16 15 14 18 18 H 1.07995 * 119.99439 * 174.73966 * 17 16 15 19 19 C 1.38808 * 120.00313 * 354.74040 * 17 16 15 20 20 N 1.31625 * 120.00076 * 7.05338 * 19 17 16 21 21 Si 1.86801 * 120.00160 * 187.05290 * 19 17 16 22 22 H 1.48500 * 109.47181 * 94.98549 * 21 19 17 23 23 H 1.48494 * 109.46965 * 214.98637 * 21 19 17 24 24 H 1.48505 * 109.46994 * 334.98795 * 21 19 17 25 25 C 1.47725 * 108.82181 * 359.07255 * 16 15 14 26 26 H 1.09006 * 109.47072 * 296.04922 * 1 2 3 27 27 H 1.08996 * 109.47383 * 56.04157 * 1 2 3 28 28 H 1.08996 * 109.47614 * 176.04682 * 1 2 3 29 29 H 1.09001 * 109.46733 * 183.95403 * 3 2 1 30 30 H 1.08995 * 109.47128 * 303.95228 * 3 2 1 31 31 H 1.08993 * 109.47113 * 63.95509 * 3 2 1 32 32 H 1.08999 * 109.47378 * 306.04462 * 4 2 1 33 33 H 1.09008 * 109.46963 * 186.04185 * 4 2 1 34 34 H 1.08997 * 109.47128 * 305.00175 * 5 4 2 35 35 H 1.08998 * 109.47569 * 184.99215 * 5 4 2 36 36 H 1.09000 * 109.47044 * 60.00366 * 7 6 5 37 37 H 1.09000 * 109.47295 * 300.00172 * 7 6 5 38 38 H 1.09001 * 113.85784 * 42.31343 * 11 10 8 39 39 H 1.08995 * 113.97352 * 270.65390 * 11 10 8 40 40 H 1.09003 * 113.84529 * 89.36530 * 13 10 8 41 41 H 1.08995 * 113.85959 * 317.69752 * 13 10 8 42 42 H 1.09000 * 110.75904 * 44.60973 * 14 12 11 43 43 H 1.08999 * 110.76158 * 281.23303 * 14 12 11 44 44 H 1.08998 * 109.86529 * 98.69001 * 15 14 12 45 45 H 1.08998 * 109.86930 * 219.66141 * 15 14 12 46 46 H 0.96995 * 120.00011 * 179.97438 * 20 19 17 47 47 H 1.09004 * 110.39664 * 141.24526 * 25 16 15 48 48 H 1.08996 * 110.40059 * 263.65852 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9704 6 8 2.2955 -2.7696 -0.1800 7 6 2.0212 -4.1499 -0.4279 8 6 2.7695 -4.5978 -1.6570 9 8 3.4692 -3.8124 -2.2608 10 7 2.6612 -5.8712 -2.0852 11 6 3.2340 -6.6339 -3.2153 12 6 2.9781 -7.8680 -2.3589 13 6 1.9235 -7.0619 -1.6109 14 6 2.4835 -9.1213 -3.0972 15 6 2.7531 -10.2483 -2.0739 16 7 3.7691 -9.7525 -1.1321 17 6 4.2698 -10.4455 -0.0624 18 1 5.0762 -10.0277 0.5219 19 6 3.7410 -11.6849 0.2708 20 7 2.8567 -12.2569 -0.5188 21 14 4.2841 -12.5410 1.8397 22 1 3.3234 -12.2333 2.9295 23 1 4.3239 -14.0082 1.6146 24 1 5.6366 -12.0618 2.2223 25 6 4.1610 -8.3849 -1.5301 26 1 -0.3633 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8523 28 1 -0.3634 -1.0251 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9232 32 1 1.5611 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1756 34 1 0.5531 -2.3389 0.8433 35 1 1.9438 -2.7964 1.8557 36 1 0.9510 -4.2854 -0.5842 37 1 2.3414 -4.7436 0.4284 38 1 4.2903 -6.4321 -3.3931 39 1 2.6339 -6.5961 -4.1244 40 1 0.9206 -7.1540 -2.0280 41 1 1.9512 -7.1960 -0.5296 42 1 3.0566 -9.2833 -4.0102 43 1 1.4185 -9.0454 -3.3167 44 1 1.8356 -10.4880 -1.5366 45 1 3.1233 -11.1351 -2.5883 46 1 2.4875 -13.1231 -0.2861 47 1 4.3092 -7.7605 -0.6490 48 1 5.0669 -8.4103 -2.1357 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148604297.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = -21.913851 kcal Electronic energy + Delta-G solvation = -26194.827172 eV Core-core repulsion = 22479.708557 eV Total energy + Delta-G solvation = -3715.118614 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 311.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.77676 -39.94161 -38.98018 -37.53423 -37.11817 -34.10710 -31.83353 -31.14212 -30.14729 -28.50820 -28.41304 -27.36719 -26.92450 -25.15814 -24.85213 -22.10058 -21.96216 -20.59381 -19.56163 -18.79266 -18.13185 -17.69611 -17.56756 -16.90918 -16.68580 -16.62802 -16.07656 -15.83510 -15.73913 -15.58948 -15.49851 -14.70219 -14.29665 -14.18467 -13.84165 -13.66951 -13.49816 -13.36806 -13.19738 -13.17319 -13.12561 -12.83907 -12.76615 -12.62775 -12.40800 -12.32054 -12.00191 -11.91816 -11.87740 -11.68097 -11.66502 -11.26705 -10.69367 -10.63177 -10.62518 -9.71348 -9.22173 -8.85460 -7.83478 -5.16925 1.48356 1.48548 1.54783 1.57724 1.59779 2.50814 2.77939 3.04618 3.29193 3.42003 3.51850 3.68981 3.76773 4.04114 4.12108 4.14039 4.20202 4.21999 4.26413 4.29610 4.45149 4.47921 4.50821 4.52952 4.60496 4.65931 4.66365 4.72536 4.74753 4.79890 4.87169 4.89596 5.00487 5.00790 5.04320 5.11406 5.15239 5.25242 5.49601 5.75014 5.85059 6.01321 6.11449 6.23900 6.24808 6.66403 7.12810 7.14555 7.80571 8.44871 9.26759 Molecular weight = 311.20amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002618 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.379520 B =10693.530746 C =11560.990223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.568 5.568 3 C 0.027 3.973 4 C 0.057 3.943 5 C 0.058 3.942 6 O -0.380 6.380 7 C 0.054 3.946 8 C 0.530 3.470 9 O -0.578 6.578 10 N -0.642 5.642 11 C 0.130 3.870 12 C -0.098 4.098 13 C 0.128 3.872 14 C -0.112 4.112 15 C 0.183 3.817 16 N -0.625 5.625 17 C -0.241 4.241 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.945 5.945 21 Si 0.972 3.028 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.273 1.273 25 C 0.158 3.842 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.020 0.980 45 H 0.002 0.998 46 H 0.247 0.753 47 H 0.034 0.966 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.551 20.717 0.936 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.293 5.293 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.018 4.018 6 O -0.299 6.299 7 C -0.026 4.026 8 C 0.320 3.680 9 O -0.457 6.457 10 N -0.378 5.378 11 C 0.008 3.992 12 C -0.100 4.100 13 C 0.007 3.993 14 C -0.151 4.151 15 C 0.058 3.942 16 N -0.351 5.351 17 C -0.370 4.370 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.594 5.594 21 Si 0.801 3.199 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.198 1.198 25 C 0.033 3.967 26 H 0.055 0.945 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.039 0.961 45 H 0.020 0.980 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.903 21.054 0.260 22.490 hybrid contribution 0.140 -0.715 1.647 1.801 sum -7.763 20.339 1.907 21.853 Atomic orbital electron populations 1.22447 0.86569 1.02423 1.01052 1.61879 1.08889 1.14644 1.43849 1.22365 1.00638 0.88028 1.01044 1.22175 1.01033 0.91756 0.92151 1.22831 0.97038 0.94216 0.87749 1.88071 1.71050 1.22713 1.48038 1.22137 1.00226 0.84813 0.95380 1.20479 0.81522 0.79862 0.86143 1.90687 1.42296 1.53077 1.59682 1.50208 1.48933 1.08145 1.30487 1.23056 1.00269 0.84822 0.91055 1.22269 0.96846 0.93947 0.96899 1.23196 0.96759 0.78450 1.00925 1.22521 1.02269 0.92641 0.97620 1.21018 0.91193 0.93028 0.88939 1.44850 1.46885 1.12653 1.30732 1.19359 1.13825 0.99943 1.03902 0.90643 1.25555 0.99771 0.98372 1.01637 1.70173 1.34339 1.16940 1.37956 0.85156 0.77886 0.77179 0.79697 1.21184 1.22266 1.19768 1.21139 0.94313 0.85529 0.95689 0.94535 0.91167 0.91426 0.91897 0.90983 0.94602 0.91049 0.90833 0.91693 0.91128 0.88014 0.89056 0.90811 0.86693 0.86217 0.89933 0.90347 0.88442 0.96148 0.97992 0.94355 0.94740 0.96146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.33 127.69 1.19 1.53 16 2 N -0.57 -10.99 4.97 -948.84 -4.71 -15.70 16 3 C 0.03 0.42 9.57 127.69 1.22 1.64 16 4 C 0.06 0.97 5.34 86.30 0.46 1.43 16 5 C 0.06 1.04 5.99 71.98 0.43 1.47 16 6 O -0.38 -10.29 9.82 -129.94 -1.28 -11.57 16 7 C 0.05 1.27 6.16 71.24 0.44 1.71 16 8 C 0.53 16.57 8.13 87.66 0.71 17.29 16 9 O -0.58 -23.55 17.22 16.00 0.28 -23.27 16 10 N -0.64 -17.62 3.62 -863.56 -3.12 -20.75 16 11 C 0.13 3.37 8.21 85.91 0.71 4.07 16 12 C -0.10 -2.89 0.99 -52.16 -0.05 -2.94 16 13 C 0.13 3.16 7.92 85.90 0.68 3.84 16 14 C -0.11 -3.44 6.36 31.36 0.20 -3.24 16 15 C 0.18 8.33 5.40 86.80 0.47 8.80 16 16 N -0.62 -30.62 3.41 -693.34 -2.36 -32.98 16 17 C -0.24 -13.20 10.26 84.03 0.86 -12.34 16 18 H 0.08 4.03 7.84 -2.91 -0.02 4.01 16 19 C -0.06 -3.32 5.48 84.86 0.46 -2.85 16 20 N -0.95 -54.93 10.35 21.65 0.22 -54.71 16 21 Si 0.97 44.79 29.56 68.60 2.03 46.82 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 C 0.16 6.21 6.63 86.28 0.57 6.78 16 26 H 0.04 0.43 8.14 -2.38 -0.02 0.41 16 27 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 28 H 0.07 1.00 6.37 -2.39 -0.02 0.98 16 29 H 0.06 1.03 8.12 -2.39 -0.02 1.02 16 30 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 31 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.07 1.41 8.06 -2.38 -0.02 1.39 16 34 H 0.06 0.96 6.34 -2.39 -0.02 0.95 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 39 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.12 2.25 8.04 -2.39 -0.02 2.23 16 41 H 0.08 2.16 8.12 -2.39 -0.02 2.14 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.10 2.41 7.99 -2.39 -0.02 2.40 16 44 H 0.02 1.03 7.30 -2.39 -0.02 1.01 16 45 H 0.00 0.10 7.60 -2.39 -0.02 0.08 16 46 H 0.25 13.99 8.31 -92.71 -0.77 13.22 16 47 H 0.03 1.38 8.07 -2.38 -0.02 1.36 16 48 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -75.33 385.83 0.32 -75.00 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.91 Total: 9.96 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 8.36 Total: 27.20 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -9.98 Total: -124.14 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -1.00 Total: -34.84 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.33 0.32 -75.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148604297.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.089 kcal (2) G-P(sol) polarization free energy of solvation -75.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds