Wall clock time and date at job start Fri Apr 10 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 108.89875 * 2 1 4 4 C 1.39118 * 120.00071 * 298.29494 * 3 2 1 5 5 C 1.39170 * 119.63148 * 353.92650 * 4 3 2 6 6 C 1.38209 * 119.17103 * 179.73680 * 5 4 3 7 7 C 1.39448 * 118.44985 * 0.49992 * 6 5 4 8 8 O 1.35815 * 120.40496 * 179.75212 * 7 6 5 9 9 C 1.34811 * 116.99899 * 0.39895 * 8 7 6 10 10 H 1.07995 * 120.00074 * 4.96517 * 9 8 7 11 11 C 1.38628 * 119.99783 * 184.97046 * 9 8 7 12 12 N 1.31575 * 120.00203 * 179.97438 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46947 * 90.00436 * 13 11 9 15 15 H 1.48500 * 109.46938 * 210.00122 * 13 11 9 16 16 H 1.48500 * 109.47170 * 330.00246 * 13 11 9 17 17 C 1.38668 * 119.19123 * 359.47847 * 7 6 5 18 18 N 1.31935 * 120.75894 * 0.27662 * 17 7 6 19 19 C 1.52978 * 108.92901 * 118.68405 * 2 1 3 20 20 C 1.54939 * 108.74561 * 90.56838 * 19 2 1 21 21 S 1.83845 * 101.10795 * 42.03173 * 20 19 2 22 22 O 1.42098 * 109.61549 * 210.98248 * 21 20 19 23 23 O 1.42101 * 109.61131 * 77.02720 * 21 20 19 24 24 C 1.53617 * 108.93281 * 241.31321 * 2 1 3 25 25 H 1.08998 * 109.47123 * 64.42544 * 1 2 3 26 26 H 1.09004 * 109.47408 * 184.42002 * 1 2 3 27 27 H 1.08997 * 109.46896 * 304.42171 * 1 2 3 28 28 H 0.96998 * 120.00122 * 118.29927 * 3 2 1 29 29 H 1.08003 * 120.41350 * 0.02562 * 5 4 3 30 30 H 1.08006 * 120.77725 * 180.27740 * 6 5 4 31 31 H 0.97000 * 120.00456 * 179.97438 * 12 11 9 32 32 H 1.08003 * 119.62145 * 180.29513 * 17 7 6 33 33 H 1.08998 * 109.64935 * 210.51402 * 19 2 1 34 34 H 1.08993 * 109.65106 * 330.82727 * 19 2 1 35 35 H 1.08997 * 111.17684 * 284.05455 * 20 19 2 36 36 H 1.09004 * 111.09601 * 159.97504 * 20 19 2 37 37 H 1.09002 * 110.27131 * 0.73292 * 24 2 1 38 38 H 1.09000 * 110.26813 * 122.70625 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0045 1.3860 0.0000 4 6 1.6895 2.2291 -1.0608 5 6 1.0332 1.7163 -2.1758 6 6 0.7200 2.5635 -3.2219 7 6 1.0859 3.9054 -3.1224 8 8 0.8023 4.7717 -4.1292 9 6 0.1544 4.2733 -5.2012 10 1 -0.1858 3.2483 -5.1980 11 6 -0.0749 5.0764 -6.3076 12 7 -0.7068 4.5898 -7.3541 13 14 0.5131 6.8494 -6.3128 14 1 1.8910 6.9123 -6.8630 15 1 -0.3942 7.6693 -7.1553 16 1 0.5099 7.3761 -4.9243 17 6 1.7379 4.3458 -1.9805 18 7 2.0169 3.5103 -0.9982 19 6 2.0262 -0.6946 1.2695 20 6 2.2015 -2.2054 0.9743 21 16 2.9765 -2.1532 -0.6920 22 8 2.5905 -3.3021 -1.4338 23 8 4.3499 -1.8098 -0.5687 24 6 2.0284 -0.6975 -1.2747 25 1 -0.3633 0.4436 -0.9270 26 1 -0.3634 -1.0246 0.0792 27 1 -0.3633 0.5809 0.8477 28 1 2.5383 1.7159 0.7396 29 1 0.7677 0.6704 -2.2210 30 1 0.2070 2.1941 -4.0976 31 1 -0.8676 5.1518 -8.1282 32 1 2.0202 5.3846 -1.8940 33 1 2.9817 -0.2660 1.5721 34 1 1.2974 -0.5616 2.0688 35 1 1.2384 -2.7148 0.9430 36 1 2.8660 -2.6727 1.7012 37 1 1.1838 -1.0167 -1.8854 38 1 2.6735 -0.0281 -1.8438 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170555018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:17 Heat of formation + Delta-G solvation = -60.840300 kcal Electronic energy + Delta-G solvation = -23882.993821 eV Core-core repulsion = 20239.555249 eV Total energy + Delta-G solvation = -3643.438572 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.62491 -40.02154 -38.52284 -38.06811 -37.04950 -34.58942 -34.06497 -33.16078 -31.01980 -29.87779 -28.73868 -27.21093 -25.29461 -24.50360 -23.05051 -21.07288 -20.15691 -19.86486 -19.14939 -18.04822 -17.92100 -17.38211 -17.26584 -16.84795 -16.22582 -16.06740 -15.90540 -15.40255 -15.25181 -14.87696 -14.70920 -14.41393 -14.17890 -13.99218 -13.71883 -13.52927 -13.50468 -13.26123 -13.17356 -13.08702 -12.84348 -12.77595 -12.45026 -12.10517 -11.98460 -11.68392 -11.62948 -11.30118 -11.02388 -10.60448 -10.47185 -10.37893 -8.47983 -8.36544 -6.17146 -0.91944 0.32109 0.64631 1.34263 1.37857 1.54158 1.54871 2.13515 2.30179 2.65084 2.81417 3.03042 3.11478 3.14776 3.37965 3.47770 3.62943 3.82138 3.89836 4.01671 4.07885 4.17824 4.30451 4.41961 4.59906 4.72366 4.82357 4.85078 4.86766 4.92300 5.02748 5.12222 5.34001 5.37326 5.42556 5.65515 5.98224 6.20203 6.70758 6.86734 7.27454 7.61166 8.63547 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.003299 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.333309 B = 8485.650776 C = 8952.221498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.200 3.800 3 N -0.714 5.714 4 C 0.336 3.664 5 C -0.191 4.191 6 C -0.151 4.151 7 C 0.029 3.971 8 O -0.241 6.241 9 C -0.396 4.396 10 H 0.082 0.918 11 C 0.010 3.990 12 N -0.924 5.924 13 Si 0.968 3.032 14 H -0.269 1.269 15 H -0.270 1.270 16 H -0.259 1.259 17 C 0.074 3.926 18 N -0.509 5.509 19 C -0.125 4.125 20 C -0.536 4.536 21 S 2.378 3.622 22 O -0.979 6.979 23 O -0.976 6.976 24 C -0.616 4.616 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.410 0.590 29 H 0.166 0.834 30 H 0.126 0.874 31 H 0.284 0.716 32 H 0.165 0.835 33 H 0.104 0.896 34 H 0.139 0.861 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.116 -13.418 21.204 25.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.111 3.889 3 N -0.353 5.353 4 C 0.101 3.899 5 C -0.215 4.215 6 C -0.178 4.178 7 C -0.023 4.023 8 O -0.148 6.148 9 C -0.473 4.473 10 H 0.099 0.901 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.195 1.195 16 H -0.184 1.184 17 C -0.083 4.083 18 N -0.226 5.226 19 C -0.164 4.164 20 C -0.670 4.670 21 S 2.566 3.434 22 O -0.976 6.976 23 O -0.973 6.973 24 C -0.746 4.746 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.248 0.752 29 H 0.183 0.817 30 H 0.144 0.856 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.122 0.878 34 H 0.157 0.843 35 H 0.191 0.809 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.157 -13.559 21.162 25.475 hybrid contribution -0.768 1.034 -1.262 1.803 sum 3.390 -12.525 19.900 23.757 Atomic orbital electron populations 1.22688 0.92587 1.04859 1.03631 1.20369 0.96006 0.80958 0.91521 1.44383 1.60021 1.08902 1.22031 1.18211 0.94961 0.87704 0.88999 1.21975 1.04376 1.01978 0.93127 1.21652 1.02384 0.93249 1.00486 1.20415 0.99925 0.90608 0.91309 1.83527 1.69970 1.35478 1.25783 1.20659 1.34394 0.99533 0.92690 0.90093 1.25218 0.96337 1.03964 0.93278 1.69732 1.41836 1.39095 1.05892 0.85245 0.78518 0.78073 0.79102 1.19377 1.19475 1.18352 1.21676 0.99468 0.99735 0.87450 1.67084 1.23776 1.02987 1.28777 1.22326 1.06401 0.90678 0.96952 1.30361 1.15744 1.02867 1.18020 1.09307 0.76356 0.76445 0.81282 1.93564 1.84685 1.47641 1.71685 1.93582 1.32160 1.84655 1.86926 1.31232 1.15740 1.19340 1.08310 0.92696 0.87832 0.90647 0.75221 0.81671 0.85600 0.90684 0.81769 0.87795 0.84318 0.80938 0.81394 0.82124 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 7.78 71.98 0.56 -1.61 16 2 C 0.20 2.62 0.94 3.80 0.00 2.62 16 3 N -0.71 -14.37 5.16 -303.91 -1.57 -15.94 16 4 C 0.34 10.21 6.98 133.04 0.93 11.14 16 5 C -0.19 -6.12 6.87 22.49 0.15 -5.97 16 6 C -0.15 -6.25 9.25 22.55 0.21 -6.04 16 7 C 0.03 1.34 6.67 22.66 0.15 1.49 16 8 O -0.24 -12.70 8.59 -23.26 -0.20 -12.90 16 9 C -0.40 -22.74 9.95 67.91 0.68 -22.06 16 10 H 0.08 4.81 5.49 -2.91 -0.02 4.80 16 11 C 0.01 0.59 5.49 84.82 0.47 1.05 16 12 N -0.92 -54.54 13.96 21.61 0.30 -54.24 16 13 Si 0.97 44.90 28.62 68.60 1.96 46.86 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 17 C 0.07 2.90 11.14 84.78 0.94 3.85 16 18 N -0.51 -17.85 10.39 -192.67 -2.00 -19.85 16 19 C -0.12 -0.65 5.36 31.25 0.17 -0.48 16 20 C -0.54 -1.89 7.46 72.64 0.54 -1.35 16 21 S 2.38 36.50 6.05 -56.49 -0.34 36.15 16 22 O -0.98 -22.50 18.16 -127.52 -2.32 -24.82 16 23 O -0.98 -23.66 18.16 -127.52 -2.32 -25.98 16 24 C -0.62 -9.76 4.77 72.19 0.34 -9.42 16 25 H 0.05 0.97 5.31 -2.39 -0.01 0.95 16 26 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.41 7.05 8.35 -92.71 -0.77 6.27 16 29 H 0.17 4.13 3.39 -2.91 -0.01 4.12 16 30 H 0.13 5.60 5.75 -2.91 -0.02 5.58 16 31 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.17 5.85 8.06 -2.91 -0.02 5.83 16 33 H 0.10 0.50 7.77 -2.39 -0.02 0.48 16 34 H 0.14 0.06 7.81 -2.39 -0.02 0.04 16 35 H 0.17 -0.30 8.14 -2.39 -0.02 -0.31 16 36 H 0.17 -0.09 8.14 -2.38 -0.02 -0.11 16 37 H 0.16 2.05 6.66 -2.39 -0.02 2.03 16 38 H 0.13 2.73 6.63 -2.39 -0.02 2.71 16 Total: -1.00 -81.73 319.17 -0.98 -82.71 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.35 Total: 14.79 kcal Atomic # 6 Polarization: -31.94 SS G_CDS: 5.15 Total: -26.79 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -3.27 Total: -90.03 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -4.83 Total: -63.70 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.96 Total: 46.86 kcal Atomic # 16 Polarization: 36.50 SS G_CDS: -0.34 Total: 36.15 kcal Total: -81.73 -0.98 -82.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170555018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.874 kcal (2) G-P(sol) polarization free energy of solvation -81.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds