Wall clock time and date at job start Fri Apr 10 2020 18:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00181 * 2 1 4 4 H 1.48497 * 109.47190 * 239.99667 * 3 2 1 5 5 H 1.48503 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47077 * 119.99653 * 3 2 1 7 7 C 1.37881 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99901 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99896 * 0.28028 * 7 2 1 10 10 O 1.42106 * 106.40133 * 293.26466 * 9 7 2 11 11 O 1.42102 * 106.40414 * 66.17994 * 9 7 2 12 12 N 1.65599 * 107.21743 * 179.72376 * 9 7 2 13 13 C 1.40017 * 119.99959 * 67.61008 * 12 9 7 14 14 C 1.38668 * 120.09544 * 327.62450 * 13 12 9 15 15 C 1.38269 * 119.99785 * 179.77146 * 14 13 12 16 16 C 1.38260 * 120.19292 * 0.50816 * 15 14 13 17 17 C 1.38269 * 120.19004 * 359.74387 * 16 15 14 18 18 C 1.38663 * 120.00091 * 0.02562 * 17 16 15 19 19 N 1.40025 * 120.09352 * 179.97438 * 18 17 16 20 20 C 1.47008 * 111.00154 * 63.65433 * 19 18 17 21 21 C 1.53100 * 109.25649 * 177.60690 * 20 19 18 22 22 O 1.43012 * 109.25677 * 56.84827 * 21 20 19 23 23 C 1.43014 * 113.73904 * 301.32857 * 22 21 20 24 24 C 1.47015 * 110.99902 * 300.01760 * 19 18 17 25 25 H 0.97008 * 119.99558 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00054 * 247.60598 * 12 9 7 27 27 H 1.07994 * 119.99866 * 0.02562 * 14 13 12 28 28 H 1.07993 * 119.90283 * 180.25431 * 15 14 13 29 29 H 1.08002 * 119.90489 * 179.76951 * 16 15 14 30 30 H 1.07999 * 119.99659 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.50912 * 297.54016 * 20 19 18 32 32 H 1.09000 * 109.50932 * 57.67159 * 20 19 18 33 33 H 1.08995 * 109.50794 * 296.91328 * 21 20 19 34 34 H 1.08995 * 109.53905 * 176.80417 * 21 20 19 35 35 H 1.09001 * 109.50938 * 298.73253 * 23 22 21 36 36 H 1.09008 * 109.54184 * 178.62963 * 23 22 21 37 37 H 1.09000 * 109.50605 * 302.32956 * 24 19 18 38 38 H 1.09005 * 109.50665 * 62.45692 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 16 1.1234 -2.7200 -0.0062 10 8 0.4512 -2.8007 1.2431 11 8 0.4513 -2.7897 -1.2563 12 7 2.2481 -3.9354 -0.0115 13 6 3.0626 -4.1405 1.1088 14 6 3.4486 -3.0648 1.8941 15 6 4.2490 -3.2702 3.0027 16 6 4.6753 -4.5451 3.3259 17 6 4.2994 -5.6228 2.5454 18 6 3.4930 -5.4265 1.4346 19 7 3.1116 -6.5164 0.6425 20 6 2.2811 -7.4582 1.4070 21 6 1.8381 -8.6007 0.4891 22 8 2.9933 -9.2297 -0.0723 23 6 3.8244 -8.3413 -0.8241 24 6 4.2876 -7.1963 0.0804 25 1 -0.4850 0.8401 -0.0004 26 1 2.3427 -4.5053 -0.7907 27 1 3.1208 -2.0672 1.6421 28 1 4.5454 -2.4319 3.6155 29 1 5.3035 -4.6998 4.1907 30 1 4.6339 -6.6173 2.8010 31 1 2.8597 -7.8623 2.2376 32 1 1.4033 -6.9396 1.7923 33 1 1.2147 -8.2033 -0.3118 34 1 1.2695 -9.3311 1.0646 35 1 3.2589 -7.9363 -1.6633 36 1 4.6929 -8.8835 -1.1984 37 1 4.8744 -6.4865 -0.5026 38 1 4.8984 -7.5961 0.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192929253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:57 Heat of formation + Delta-G solvation = -94.630316 kcal Electronic energy + Delta-G solvation = -24631.619020 eV Core-core repulsion = 20986.715202 eV Total energy + Delta-G solvation = -3644.903817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.30384 -38.55088 -35.54370 -35.23994 -34.32420 -34.07883 -33.19368 -31.26131 -30.01513 -28.63326 -26.34634 -26.20177 -24.04935 -22.66496 -21.51768 -20.26601 -18.92151 -17.89971 -17.38015 -16.75279 -16.26559 -16.19592 -15.37186 -15.16070 -15.10847 -14.95702 -14.68771 -14.13350 -14.08571 -13.76160 -13.48497 -13.12673 -12.78102 -12.33445 -12.08929 -11.84313 -11.56584 -11.50902 -11.47027 -11.26276 -10.97878 -10.68735 -10.66782 -10.62526 -10.41360 -10.30191 -10.18056 -9.75581 -9.30846 -8.90929 -8.53245 -8.46405 -7.64400 -6.79406 -5.43566 1.57057 1.75439 2.15122 3.03873 3.09006 3.14028 3.64163 3.82211 3.97638 4.05384 4.53403 4.58138 4.81723 4.91266 5.06411 5.11345 5.14287 5.19188 5.33951 5.46690 5.48685 5.55914 5.65237 5.70201 5.74081 5.79210 5.89543 5.92708 6.18113 6.35287 6.51375 6.61368 6.82527 6.85533 6.88577 7.03073 7.11262 7.21849 7.52011 7.83336 7.88551 8.77389 10.14507 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.004852 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.324153 B = 5769.223070 C = 6547.108687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.134 3.866 3 Si 0.922 3.078 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.262 1.262 7 C -1.024 5.024 8 H 0.109 0.891 9 S 2.703 3.297 10 O -0.991 6.991 11 O -0.998 6.998 12 N -1.059 6.059 13 C 0.227 3.773 14 C -0.168 4.168 15 C -0.084 4.084 16 C -0.150 4.150 17 C -0.124 4.124 18 C 0.034 3.966 19 N -0.493 5.493 20 C 0.023 3.977 21 C 0.063 3.937 22 O -0.388 6.388 23 C 0.063 3.937 24 C 0.021 3.979 25 H 0.293 0.707 26 H 0.417 0.583 27 H 0.164 0.836 28 H 0.125 0.875 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.680 -11.488 2.954 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.186 1.186 7 C -1.157 5.157 8 H 0.127 0.873 9 S 2.804 3.196 10 O -0.981 6.981 11 O -0.989 6.989 12 N -0.799 5.799 13 C 0.126 3.874 14 C -0.190 4.190 15 C -0.103 4.103 16 C -0.170 4.170 17 C -0.144 4.144 18 C -0.063 4.063 19 N -0.215 5.215 20 C -0.104 4.104 21 C -0.014 4.014 22 O -0.306 6.306 23 C -0.014 4.014 24 C -0.106 4.106 25 H 0.104 0.896 26 H 0.250 0.750 27 H 0.181 0.819 28 H 0.143 0.857 29 H 0.135 0.865 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.192 -11.473 2.626 14.340 hybrid contribution 1.419 0.944 0.302 1.731 sum 9.611 -10.529 2.927 14.553 Atomic orbital electron populations 1.69886 1.06848 1.31093 1.39116 1.24751 0.94481 1.00839 0.88388 0.86170 0.79882 0.79469 0.79945 1.18771 1.20057 1.18623 1.30554 1.06143 1.11468 1.67496 0.87272 1.00988 0.72172 0.73383 0.73105 1.93404 1.72173 1.87141 1.45413 1.93392 1.72552 1.87394 1.45515 1.54154 1.52944 1.51427 1.21409 1.17281 0.90811 0.91518 0.87795 1.21944 0.99766 1.00337 0.96929 1.20982 0.96487 0.96930 0.95906 1.20856 1.02829 0.92710 1.00580 1.21270 0.98940 0.98835 0.95397 1.18432 1.02777 0.90080 0.95041 1.59638 1.19162 1.07584 1.35087 1.22854 0.98582 0.93528 0.95438 1.22712 0.87718 0.94386 0.96622 1.87953 1.36909 1.35840 1.69918 1.22689 0.94772 0.90453 0.93503 1.22874 0.92181 0.96740 0.98835 0.89618 0.74950 0.81854 0.85679 0.86489 0.86749 0.93563 0.89102 0.91909 0.88336 0.92000 0.88487 0.89422 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.94 13.19 55.43 0.73 -23.21 16 2 C 0.13 3.60 5.46 -17.82 -0.10 3.50 16 3 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -1.02 -26.84 7.57 30.60 0.23 -26.61 16 8 H 0.11 2.58 6.92 -52.49 -0.36 2.22 16 9 S 2.70 70.78 4.63 -107.50 -0.50 70.28 16 10 O -0.99 -28.58 17.43 -57.17 -1.00 -29.57 16 11 O -1.00 -28.91 18.02 -57.17 -1.03 -29.94 16 12 N -1.06 -21.90 5.66 32.54 0.18 -21.71 16 13 C 0.23 4.35 6.23 -83.50 -0.52 3.83 16 14 C -0.17 -3.22 8.91 -39.41 -0.35 -3.58 16 15 C -0.08 -1.32 10.04 -39.56 -0.40 -1.71 16 16 C -0.15 -2.06 10.04 -39.56 -0.40 -2.46 16 17 C -0.12 -1.75 8.63 -39.41 -0.34 -2.09 16 18 C 0.03 0.56 4.76 -83.50 -0.40 0.16 16 19 N -0.49 -7.10 4.15 -170.60 -0.71 -7.81 16 20 C 0.02 0.30 5.41 -3.71 -0.02 0.28 16 21 C 0.06 0.72 7.01 37.21 0.26 0.98 16 22 O -0.39 -4.75 10.83 -35.23 -0.38 -5.14 16 23 C 0.06 0.67 7.01 37.20 0.26 0.93 16 24 C 0.02 0.25 5.37 -3.71 -0.02 0.23 16 25 H 0.29 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.42 7.69 8.57 -34.47 -0.30 7.40 16 27 H 0.16 3.43 4.49 -52.49 -0.24 3.20 16 28 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 30 H 0.11 1.38 7.04 -52.49 -0.37 1.01 16 31 H 0.05 0.57 7.42 -51.93 -0.39 0.18 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.81 8.14 -51.92 -0.42 0.39 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.05 0.52 7.22 -51.93 -0.37 0.14 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -33.92 326.11 -9.13 -43.05 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -4.54 Total: 10.98 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -1.79 Total: -26.54 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.21 Total: -52.73 kcal Atomic # 8 Polarization: -62.24 SS G_CDS: -2.41 Total: -64.65 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 16 Polarization: 70.78 SS G_CDS: -0.50 Total: 70.28 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.92 -9.13 -43.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.580 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds