Wall clock time and date at job start Fri Apr 10 2020 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00181 * 2 1 4 4 H 1.48497 * 109.47190 * 239.99667 * 3 2 1 5 5 H 1.48503 * 109.47226 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47077 * 119.99653 * 3 2 1 7 7 C 1.37881 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99901 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99896 * 0.28028 * 7 2 1 10 10 O 1.42106 * 106.40133 * 293.26466 * 9 7 2 11 11 O 1.42102 * 106.40414 * 66.17994 * 9 7 2 12 12 N 1.65599 * 107.21743 * 179.72376 * 9 7 2 13 13 C 1.40017 * 119.99959 * 67.61008 * 12 9 7 14 14 C 1.38668 * 120.09544 * 327.62450 * 13 12 9 15 15 C 1.38269 * 119.99785 * 179.77146 * 14 13 12 16 16 C 1.38260 * 120.19292 * 0.50816 * 15 14 13 17 17 C 1.38269 * 120.19004 * 359.74387 * 16 15 14 18 18 C 1.38663 * 120.00091 * 0.02562 * 17 16 15 19 19 N 1.40025 * 120.09352 * 179.97438 * 18 17 16 20 20 C 1.47008 * 111.00154 * 63.65433 * 19 18 17 21 21 C 1.53100 * 109.25649 * 177.60690 * 20 19 18 22 22 O 1.43012 * 109.25677 * 56.84827 * 21 20 19 23 23 C 1.43014 * 113.73904 * 301.32857 * 22 21 20 24 24 C 1.47015 * 110.99902 * 300.01760 * 19 18 17 25 25 H 0.97008 * 119.99558 * 0.02562 * 1 2 3 26 26 H 0.96994 * 120.00054 * 247.60598 * 12 9 7 27 27 H 1.07994 * 119.99866 * 0.02562 * 14 13 12 28 28 H 1.07993 * 119.90283 * 180.25431 * 15 14 13 29 29 H 1.08002 * 119.90489 * 179.76951 * 16 15 14 30 30 H 1.07999 * 119.99659 * 180.02562 * 17 16 15 31 31 H 1.08997 * 109.50912 * 297.54016 * 20 19 18 32 32 H 1.09000 * 109.50932 * 57.67159 * 20 19 18 33 33 H 1.08995 * 109.50794 * 296.91328 * 21 20 19 34 34 H 1.08995 * 109.53905 * 176.80417 * 21 20 19 35 35 H 1.09001 * 109.50938 * 298.73253 * 23 22 21 36 36 H 1.09008 * 109.54184 * 178.62963 * 23 22 21 37 37 H 1.09000 * 109.50605 * 302.32956 * 24 19 18 38 38 H 1.09005 * 109.50665 * 62.45692 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 16 1.1234 -2.7200 -0.0062 10 8 0.4512 -2.8007 1.2431 11 8 0.4513 -2.7897 -1.2563 12 7 2.2481 -3.9354 -0.0115 13 6 3.0626 -4.1405 1.1088 14 6 3.4486 -3.0648 1.8941 15 6 4.2490 -3.2702 3.0027 16 6 4.6753 -4.5451 3.3259 17 6 4.2994 -5.6228 2.5454 18 6 3.4930 -5.4265 1.4346 19 7 3.1116 -6.5164 0.6425 20 6 2.2811 -7.4582 1.4070 21 6 1.8381 -8.6007 0.4891 22 8 2.9933 -9.2297 -0.0723 23 6 3.8244 -8.3413 -0.8241 24 6 4.2876 -7.1963 0.0804 25 1 -0.4850 0.8401 -0.0004 26 1 2.3427 -4.5053 -0.7907 27 1 3.1208 -2.0672 1.6421 28 1 4.5454 -2.4319 3.6155 29 1 5.3035 -4.6998 4.1907 30 1 4.6339 -6.6173 2.8010 31 1 2.8597 -7.8623 2.2376 32 1 1.4033 -6.9396 1.7923 33 1 1.2147 -8.2033 -0.3118 34 1 1.2695 -9.3311 1.0646 35 1 3.2589 -7.9363 -1.6633 36 1 4.6929 -8.8835 -1.1984 37 1 4.8744 -6.4865 -0.5026 38 1 4.8984 -7.5961 0.8899 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192929253.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:56 Heat of formation + Delta-G solvation = -121.871190 kcal Electronic energy + Delta-G solvation = -24632.800273 eV Core-core repulsion = 20986.715202 eV Total energy + Delta-G solvation = -3646.085070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42122 -39.65479 -37.53049 -36.49018 -36.26711 -35.81873 -35.20559 -32.17653 -31.19353 -29.95898 -28.37091 -27.29669 -24.98113 -23.93900 -22.76722 -21.39433 -20.76903 -19.64259 -18.84057 -18.23308 -17.95372 -17.12353 -17.09646 -16.29122 -16.21783 -16.05060 -15.97620 -15.87792 -15.77598 -15.04569 -14.84918 -14.41281 -14.08107 -13.94789 -13.48164 -13.29706 -13.03883 -12.88344 -12.73407 -12.61885 -12.57282 -12.50764 -12.35313 -12.33518 -12.17149 -11.74371 -11.50425 -11.23238 -10.93060 -10.73048 -9.74131 -9.53657 -9.05514 -8.77084 -7.52728 0.12650 0.34519 0.52834 1.35421 1.37244 1.50716 2.19242 2.54696 2.60138 2.80112 2.82239 2.93634 3.61957 3.89046 3.92942 4.03777 4.14362 4.15592 4.21137 4.22987 4.24244 4.40652 4.54992 4.56488 4.65438 4.70441 4.75889 4.79268 4.94182 5.01501 5.15527 5.26278 5.36421 5.51764 5.62974 5.83304 5.83944 5.87477 6.13405 6.20879 6.46154 6.72756 8.17796 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.019571 B = 0.004852 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.324153 B = 5769.223070 C = 6547.108687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.074 3.926 3 Si 0.992 3.008 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.244 1.244 7 C -1.032 5.032 8 H 0.128 0.872 9 S 2.710 3.290 10 O -1.029 7.029 11 O -1.039 7.039 12 N -1.048 6.048 13 C 0.186 3.814 14 C -0.198 4.198 15 C -0.089 4.089 16 C -0.132 4.132 17 C -0.119 4.119 18 C 0.040 3.960 19 N -0.512 5.512 20 C 0.023 3.977 21 C 0.065 3.935 22 O -0.395 6.395 23 C 0.062 3.938 24 C 0.023 3.977 25 H 0.301 0.699 26 H 0.424 0.576 27 H 0.137 0.863 28 H 0.149 0.851 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.121 0.879 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.621 -12.292 4.233 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.189 1.189 6 H -0.168 1.168 7 C -1.166 5.166 8 H 0.146 0.854 9 S 2.812 3.188 10 O -1.019 7.019 11 O -1.029 7.029 12 N -0.794 5.794 13 C 0.087 3.913 14 C -0.220 4.220 15 C -0.107 4.107 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.058 4.058 19 N -0.235 5.235 20 C -0.104 4.104 21 C -0.012 4.012 22 O -0.314 6.314 23 C -0.015 4.015 24 C -0.104 4.104 25 H 0.111 0.889 26 H 0.259 0.741 27 H 0.155 0.845 28 H 0.167 0.833 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.137 -12.317 3.908 17.059 hybrid contribution 0.580 1.052 -0.036 1.202 sum 11.717 -11.265 3.872 16.709 Atomic orbital electron populations 1.69987 1.08874 1.32613 1.40727 1.26025 0.95339 1.05291 0.87366 0.85136 0.78757 0.74208 0.80970 1.17564 1.18910 1.16753 1.30794 1.07117 1.11537 1.67127 0.85425 1.00389 0.72558 0.74144 0.71685 1.93338 1.74007 1.87929 1.46644 1.93324 1.74470 1.88251 1.46841 1.53387 1.52764 1.50470 1.22745 1.17596 0.92436 0.93254 0.88024 1.21916 1.01813 0.99260 0.98978 1.21293 0.95579 0.98949 0.94907 1.21318 1.01467 0.91436 1.00930 1.21618 0.97683 1.00477 0.94177 1.18559 1.02214 0.89440 0.95613 1.59587 1.20627 1.07899 1.35360 1.22868 0.97922 0.93482 0.96107 1.22749 0.87675 0.94413 0.96324 1.87947 1.37077 1.36325 1.70031 1.22831 0.95451 0.90301 0.92891 1.22938 0.91327 0.96886 0.99239 0.88917 0.74069 0.84540 0.83312 0.82388 0.83808 0.92271 0.90975 0.92873 0.86102 0.92595 0.85766 0.89271 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.45 13.19 21.45 0.28 -52.17 16 2 C 0.07 3.99 5.46 84.66 0.46 4.45 16 3 Si 0.99 40.04 29.54 68.60 2.03 42.06 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.24 -9.08 7.11 99.48 0.71 -8.37 16 7 C -1.03 -55.61 7.57 67.74 0.51 -55.10 16 8 H 0.13 6.16 6.92 -2.91 -0.02 6.14 16 9 S 2.71 148.82 4.63 -56.49 -0.26 148.56 16 10 O -1.03 -62.51 17.43 -128.00 -2.23 -64.74 16 11 O -1.04 -63.31 18.02 -128.00 -2.31 -65.62 16 12 N -1.05 -45.11 5.66 -50.96 -0.29 -45.40 16 13 C 0.19 7.21 6.23 38.23 0.24 7.45 16 14 C -0.20 -7.63 8.91 22.38 0.20 -7.43 16 15 C -0.09 -2.60 10.04 22.28 0.22 -2.37 16 16 C -0.13 -3.13 10.04 22.28 0.22 -2.90 16 17 C -0.12 -2.98 8.63 22.38 0.19 -2.79 16 18 C 0.04 1.24 4.76 38.23 0.18 1.42 16 19 N -0.51 -14.21 4.15 -693.66 -2.88 -17.08 16 20 C 0.02 0.57 5.41 86.32 0.47 1.04 16 21 C 0.07 1.42 7.01 72.02 0.50 1.92 16 22 O -0.40 -8.84 10.83 -148.98 -1.61 -10.45 16 23 C 0.06 1.19 7.01 72.01 0.50 1.69 16 24 C 0.02 0.48 5.37 86.31 0.46 0.95 16 25 H 0.30 15.89 8.31 -92.70 -0.77 15.12 16 26 H 0.42 16.39 8.57 -96.75 -0.83 15.56 16 27 H 0.14 5.94 4.49 -2.91 -0.01 5.93 16 28 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 30 H 0.14 2.78 7.04 -2.91 -0.02 2.76 16 31 H 0.06 1.31 7.42 -2.39 -0.02 1.29 16 32 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.06 1.10 7.22 -2.38 -0.02 1.08 16 Total: -1.00 -76.64 326.11 -2.82 -79.46 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: 0.27 Total: 37.06 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 4.17 Total: -51.68 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -2.88 Total: -114.65 kcal Atomic # 8 Polarization: -134.66 SS G_CDS: -6.15 Total: -140.81 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 148.82 SS G_CDS: -0.26 Total: 148.56 kcal Total: -76.64 -2.82 -79.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192929253.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.409 kcal (2) G-P(sol) polarization free energy of solvation -76.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds