Wall clock time and date at job start Fri Apr 10 2020 18:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39872 * 119.72325 * 2 1 4 4 C 1.30347 * 121.03422 * 180.02562 * 3 2 1 5 5 C 1.41114 * 120.41348 * 0.02562 * 4 3 2 6 6 N 1.38481 * 120.30261 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.53035 * 109.44776 * 84.96083 * 7 6 5 9 9 C 1.53191 * 109.31236 * 181.38195 * 8 7 6 10 10 N 1.46929 * 108.77545 * 305.36669 * 9 8 7 11 11 C 1.36943 * 120.63294 * 233.58836 * 10 9 8 12 12 H 1.08000 * 119.99404 * 27.69321 * 11 10 9 13 13 C 1.38804 * 119.99837 * 207.69657 * 11 10 9 14 14 N 1.31618 * 120.00488 * 17.35070 * 13 11 10 15 15 Si 1.86806 * 119.99788 * 197.35548 * 13 11 10 16 16 H 1.48501 * 109.47162 * 89.99802 * 15 13 11 17 17 H 1.48496 * 109.47079 * 209.99949 * 15 13 11 18 18 H 1.48495 * 109.47122 * 330.00094 * 15 13 11 19 19 C 1.46924 * 118.73625 * 53.60723 * 10 9 8 20 20 C 1.53035 * 109.46075 * 205.02875 * 7 6 5 21 21 C 1.38311 * 119.39733 * 0.22806 * 5 4 3 22 22 Cl 1.73595 * 120.48970 * 179.72905 * 21 5 4 23 23 C 1.34761 * 119.71893 * 180.02562 * 2 1 3 24 24 O 1.22148 * 120.21365 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46869 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47098 * 119.99684 * 1 2 3 27 27 H 1.08991 * 109.47325 * 240.00137 * 1 2 3 28 28 H 1.08007 * 119.79308 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99868 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.45851 * 324.99967 * 7 6 5 31 31 H 1.09003 * 109.50176 * 301.33099 * 8 7 6 32 32 H 1.08996 * 109.49935 * 61.43289 * 8 7 6 33 33 H 1.09005 * 109.58899 * 185.58064 * 9 8 7 34 34 H 1.08997 * 109.59179 * 65.15342 * 9 8 7 35 35 H 0.97003 * 120.00197 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.58430 * 186.60579 * 19 10 9 37 37 H 1.08998 * 109.70564 * 66.25188 * 19 10 9 38 38 H 1.09005 * 109.49484 * 298.57729 * 20 7 6 39 39 H 1.08993 * 109.50166 * 58.63882 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1585 1.2147 0.0000 4 6 3.4617 1.2445 -0.0005 5 6 4.2037 0.0442 -0.0016 6 7 5.5881 0.0786 -0.0027 7 6 6.2889 1.3651 -0.0021 8 6 6.4225 1.8719 1.4357 9 6 7.1248 3.2333 1.4298 10 7 8.4017 3.1036 0.7146 11 6 9.5738 3.4993 1.3020 12 1 9.6711 3.4832 2.3775 13 6 10.6366 3.9210 0.5150 14 7 10.4308 4.2682 -0.7378 15 14 12.3591 3.9957 1.2340 16 1 13.0413 2.6939 1.0212 17 1 13.1292 5.0736 0.5631 18 1 12.2762 4.2789 2.6894 19 6 8.3971 2.5416 -0.6429 20 6 7.6804 1.1880 -0.6138 21 6 3.5357 -1.1669 -0.0069 22 17 4.4202 -2.6606 -0.0155 23 6 2.1331 -1.1704 -0.0005 24 8 1.5211 -2.2275 -0.0005 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5138 0.8899 28 1 3.9767 2.1939 -0.0009 29 1 6.0937 -0.7491 -0.0030 30 1 5.7228 2.0872 -0.5905 31 1 5.4318 1.9756 1.8785 32 1 7.0095 1.1623 2.0186 33 1 7.3112 3.5528 2.4552 34 1 6.4962 3.9667 0.9249 35 1 11.1735 4.5632 -1.2876 36 1 9.4229 2.4047 -0.9852 37 1 7.8736 3.2177 -1.3188 38 1 8.2557 0.4846 -0.0116 39 1 7.5852 0.8042 -1.6295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609333759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:05 Heat of formation + Delta-G solvation = 47.808278 kcal Electronic energy + Delta-G solvation = -23748.474061 eV Core-core repulsion = 20139.995889 eV Total energy + Delta-G solvation = -3608.478171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06226 -38.90529 -37.28466 -36.74744 -35.64419 -33.57094 -32.42328 -31.01640 -30.22431 -29.26722 -27.28727 -25.17173 -24.54224 -22.98806 -22.37277 -21.68196 -19.74625 -18.38864 -17.91029 -17.33909 -16.87820 -16.28293 -15.53876 -15.42077 -14.96324 -14.37898 -14.20599 -14.00583 -13.70924 -13.61142 -13.35599 -13.12961 -12.76825 -12.74807 -12.60632 -12.10566 -11.72490 -11.58082 -11.30291 -11.19125 -10.97232 -10.93449 -10.85623 -10.58101 -10.35761 -10.13102 -9.99305 -9.84952 -9.77419 -8.96111 -8.61689 -7.91536 -6.87021 -5.93813 -3.36512 0.33307 1.69449 1.81477 2.27146 2.98919 3.26430 3.29961 3.37840 3.38266 3.99161 4.37834 4.47633 4.55799 4.92963 5.07048 5.14074 5.15020 5.25076 5.31875 5.36718 5.42312 5.46438 5.59046 5.78031 5.83500 6.00079 6.15373 6.17023 6.24679 6.37319 6.55751 6.72045 6.83119 7.10209 7.20796 7.43747 7.45782 7.67240 7.85093 8.29348 9.05704 9.68374 10.23000 11.15120 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.003151 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.838654 B = 8883.947314 C = 9473.174077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.428 5.428 3 N -0.191 5.191 4 C 0.067 3.933 5 C 0.260 3.740 6 N -0.689 5.689 7 C 0.139 3.861 8 C -0.148 4.148 9 C 0.147 3.853 10 N -0.591 5.591 11 C -0.257 4.257 12 H 0.067 0.933 13 C 0.005 3.995 14 N -0.902 5.902 15 Si 0.903 3.097 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.278 1.278 19 C 0.174 3.826 20 C -0.148 4.148 21 C -0.256 4.256 22 Cl -0.033 7.033 23 C 0.534 3.466 24 O -0.541 6.541 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.203 0.797 29 H 0.409 0.591 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.022 0.978 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.024 0.976 38 H 0.064 0.936 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 -6.060 0.143 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.250 5.250 3 N -0.004 5.004 4 C -0.135 4.135 5 C 0.139 3.861 6 N -0.311 5.311 7 C 0.036 3.964 8 C -0.188 4.188 9 C 0.019 3.981 10 N -0.314 5.314 11 C -0.387 4.387 12 H 0.085 0.915 13 C -0.194 4.194 14 N -0.546 5.546 15 Si 0.733 3.267 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.204 1.204 19 C 0.047 3.953 20 C -0.187 4.187 21 C -0.303 4.303 22 Cl -0.005 7.005 23 C 0.331 3.669 24 O -0.419 6.419 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.219 0.781 29 H 0.247 0.753 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.042 0.958 38 H 0.083 0.917 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.137 -5.986 0.029 16.278 hybrid contribution 1.922 -0.966 0.299 2.172 sum -13.215 -6.952 0.329 14.936 Atomic orbital electron populations 1.21768 0.74539 1.04009 1.03426 1.49478 1.08190 1.01643 1.65737 1.75057 1.09071 1.07700 1.08598 1.23921 0.89241 0.98499 1.01859 1.18765 0.86222 0.92354 0.88774 1.45559 1.01770 1.11065 1.72740 1.21468 0.94235 0.82778 0.97942 1.22583 1.00328 1.00886 0.95044 1.20888 0.88096 0.91975 0.97105 1.44091 1.01743 1.71214 1.14357 1.19190 0.89743 1.38153 0.91577 0.91488 1.25039 0.99282 0.98496 0.96581 1.70006 1.30544 1.46437 1.07591 0.86281 0.84500 0.77370 0.78565 1.21376 1.21692 1.20373 1.20772 1.00658 0.87541 0.86328 1.22559 0.93613 1.03152 0.99421 1.20949 0.91831 0.87208 1.30328 1.98314 1.73360 1.31291 1.97551 1.16424 0.87353 0.83877 0.79225 1.90986 1.69397 1.28596 1.52914 0.88892 0.90535 0.90536 0.78097 0.75256 0.89850 0.92585 0.91442 0.92154 0.96010 0.93454 0.88740 0.95824 0.91745 0.92231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.93 10.35 59.85 0.62 1.55 16 2 N -0.43 -5.33 3.91 -70.38 -0.27 -5.61 16 3 N -0.19 -2.16 11.50 30.81 0.35 -1.81 16 4 C 0.07 0.72 10.12 -17.09 -0.17 0.54 16 5 C 0.26 3.14 6.65 -83.74 -0.56 2.58 16 6 N -0.69 -8.08 5.16 -52.00 -0.27 -8.35 16 7 C 0.14 1.78 2.11 -67.89 -0.14 1.64 16 8 C -0.15 -2.05 5.60 -26.61 -0.15 -2.20 16 9 C 0.15 2.57 6.52 -3.71 -0.02 2.55 16 10 N -0.59 -13.03 3.00 -172.32 -0.52 -13.55 16 11 C -0.26 -6.48 9.59 -15.06 -0.14 -6.63 16 12 H 0.07 1.68 7.89 -52.49 -0.41 1.26 16 13 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 14 N -0.90 -24.34 11.19 55.49 0.62 -23.72 16 15 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 16 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.17 3.56 5.31 -3.71 -0.02 3.54 16 20 C -0.15 -2.28 5.55 -26.61 -0.15 -2.43 16 21 C -0.26 -3.59 6.39 -38.79 -0.25 -3.84 16 22 Cl -0.03 -0.46 27.25 -51.86 -1.41 -1.87 16 23 C 0.53 8.02 7.48 -15.50 -0.12 7.91 16 24 O -0.54 -9.53 16.62 4.78 0.08 -9.45 16 25 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.20 1.69 6.20 -52.48 -0.33 1.37 16 29 H 0.41 4.79 7.30 -40.82 -0.30 4.49 16 30 H 0.08 0.99 6.47 -51.93 -0.34 0.66 16 31 H 0.06 0.66 7.74 -51.93 -0.40 0.26 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.07 7.93 -51.93 -0.41 0.66 16 34 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.09 2.25 6.04 -51.93 -0.31 1.94 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -29.90 333.04 -7.63 -37.54 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.01 Total: 1.07 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.19 Total: 5.26 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.08 Total: -53.03 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.08 Total: -9.45 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.41 Total: -1.87 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.90 -7.63 -37.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609333759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.344 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds