Wall clock time and date at job start Fri Apr 10 2020 18:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.39872 * 119.72325 * 2 1 4 4 C 1.30347 * 121.03422 * 180.02562 * 3 2 1 5 5 C 1.41114 * 120.41348 * 0.02562 * 4 3 2 6 6 N 1.38481 * 120.30261 * 179.97438 * 5 4 3 7 7 C 1.46503 * 120.00062 * 0.02562 * 6 5 4 8 8 C 1.53035 * 109.44776 * 84.96083 * 7 6 5 9 9 C 1.53191 * 109.31236 * 181.38195 * 8 7 6 10 10 N 1.46929 * 108.77545 * 305.36669 * 9 8 7 11 11 C 1.36943 * 120.63294 * 233.58836 * 10 9 8 12 12 H 1.08000 * 119.99404 * 27.69321 * 11 10 9 13 13 C 1.38804 * 119.99837 * 207.69657 * 11 10 9 14 14 N 1.31618 * 120.00488 * 17.35070 * 13 11 10 15 15 Si 1.86806 * 119.99788 * 197.35548 * 13 11 10 16 16 H 1.48501 * 109.47162 * 89.99802 * 15 13 11 17 17 H 1.48496 * 109.47079 * 209.99949 * 15 13 11 18 18 H 1.48495 * 109.47122 * 330.00094 * 15 13 11 19 19 C 1.46924 * 118.73625 * 53.60723 * 10 9 8 20 20 C 1.53035 * 109.46075 * 205.02875 * 7 6 5 21 21 C 1.38311 * 119.39733 * 0.22806 * 5 4 3 22 22 Cl 1.73595 * 120.48970 * 179.72905 * 21 5 4 23 23 C 1.34761 * 119.71893 * 180.02562 * 2 1 3 24 24 O 1.22148 * 120.21365 * 359.97438 * 23 2 1 25 25 H 1.09005 * 109.46869 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47098 * 119.99684 * 1 2 3 27 27 H 1.08991 * 109.47325 * 240.00137 * 1 2 3 28 28 H 1.08007 * 119.79308 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99868 * 179.97438 * 6 5 4 30 30 H 1.09002 * 109.45851 * 324.99967 * 7 6 5 31 31 H 1.09003 * 109.50176 * 301.33099 * 8 7 6 32 32 H 1.08996 * 109.49935 * 61.43289 * 8 7 6 33 33 H 1.09005 * 109.58899 * 185.58064 * 9 8 7 34 34 H 1.08997 * 109.59179 * 65.15342 * 9 8 7 35 35 H 0.97003 * 120.00197 * 179.97438 * 14 13 11 36 36 H 1.09004 * 109.58430 * 186.60579 * 19 10 9 37 37 H 1.08998 * 109.70564 * 66.25188 * 19 10 9 38 38 H 1.09005 * 109.49484 * 298.57729 * 20 7 6 39 39 H 1.08993 * 109.50166 * 58.63882 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1585 1.2147 0.0000 4 6 3.4617 1.2445 -0.0005 5 6 4.2037 0.0442 -0.0016 6 7 5.5881 0.0786 -0.0027 7 6 6.2889 1.3651 -0.0021 8 6 6.4225 1.8719 1.4357 9 6 7.1248 3.2333 1.4298 10 7 8.4017 3.1036 0.7146 11 6 9.5738 3.4993 1.3020 12 1 9.6711 3.4832 2.3775 13 6 10.6366 3.9210 0.5150 14 7 10.4308 4.2682 -0.7378 15 14 12.3591 3.9957 1.2340 16 1 13.0413 2.6939 1.0212 17 1 13.1292 5.0736 0.5631 18 1 12.2762 4.2789 2.6894 19 6 8.3971 2.5416 -0.6429 20 6 7.6804 1.1880 -0.6138 21 6 3.5357 -1.1669 -0.0069 22 17 4.4202 -2.6606 -0.0155 23 6 2.1331 -1.1704 -0.0005 24 8 1.5211 -2.2275 -0.0005 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5138 -0.8900 27 1 -0.3633 -0.5138 0.8899 28 1 3.9767 2.1939 -0.0009 29 1 6.0937 -0.7491 -0.0030 30 1 5.7228 2.0872 -0.5905 31 1 5.4318 1.9756 1.8785 32 1 7.0095 1.1623 2.0186 33 1 7.3112 3.5528 2.4552 34 1 6.4962 3.9667 0.9249 35 1 11.1735 4.5632 -1.2876 36 1 9.4229 2.4047 -0.9852 37 1 7.8736 3.2177 -1.3188 38 1 8.2557 0.4846 -0.0116 39 1 7.5852 0.8042 -1.6295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609333759.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:04 Heat of formation + Delta-G solvation = 28.273639 kcal Electronic energy + Delta-G solvation = -23749.321146 eV Core-core repulsion = 20139.995889 eV Total energy + Delta-G solvation = -3609.325257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.05417 -40.08316 -38.47695 -37.80934 -36.85051 -34.84999 -33.70673 -32.34674 -31.59302 -30.59867 -28.21045 -26.73878 -25.52696 -24.25049 -23.73838 -22.89070 -21.09703 -19.51599 -18.90031 -18.52021 -18.31050 -17.25550 -16.87153 -16.59802 -16.38301 -15.64579 -15.38299 -15.32278 -15.03761 -14.74873 -14.59268 -14.33840 -14.04652 -13.90581 -13.39401 -13.18062 -13.05616 -12.99170 -12.69863 -12.59938 -12.39383 -12.36180 -12.03534 -11.98236 -11.90839 -11.72891 -11.35008 -11.18991 -11.03639 -10.51313 -9.92537 -8.96590 -8.66365 -7.86398 -5.29084 -0.62368 0.71838 0.89316 1.30347 1.48299 1.51518 1.58171 1.93401 2.24944 2.53313 3.09450 3.30220 3.51846 3.60187 3.72549 3.84013 3.98169 4.27518 4.37031 4.47529 4.48799 4.50495 4.70251 4.70905 4.78805 4.83144 4.89238 4.98552 4.99994 5.09558 5.20513 5.39679 5.53998 5.68649 5.73096 5.82073 6.19258 6.42473 6.49296 6.81672 7.18777 7.90543 8.38382 9.19864 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.027638 B = 0.003151 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.838654 B = 8883.947314 C = 9473.174077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.430 5.430 3 N -0.186 5.186 4 C 0.072 3.928 5 C 0.277 3.723 6 N -0.679 5.679 7 C 0.150 3.850 8 C -0.135 4.135 9 C 0.142 3.858 10 N -0.611 5.611 11 C -0.259 4.259 12 H 0.065 0.935 13 C -0.045 4.045 14 N -0.930 5.930 15 Si 0.957 3.043 16 H -0.288 1.288 17 H -0.298 1.298 18 H -0.271 1.271 19 C 0.179 3.821 20 C -0.135 4.135 21 C -0.278 4.278 22 Cl -0.040 7.040 23 C 0.524 3.476 24 O -0.579 6.579 25 H 0.119 0.881 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.231 0.769 29 H 0.412 0.588 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.034 0.966 35 H 0.249 0.751 36 H 0.055 0.945 37 H 0.012 0.988 38 H 0.057 0.943 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 -5.708 0.677 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.251 5.251 3 N 0.001 4.999 4 C -0.130 4.130 5 C 0.154 3.846 6 N -0.301 5.301 7 C 0.047 3.953 8 C -0.175 4.175 9 C 0.016 3.984 10 N -0.335 5.335 11 C -0.390 4.390 12 H 0.083 0.917 13 C -0.241 4.241 14 N -0.576 5.576 15 Si 0.786 3.214 16 H -0.215 1.215 17 H -0.224 1.224 18 H -0.196 1.196 19 C 0.052 3.948 20 C -0.174 4.174 21 C -0.324 4.324 22 Cl -0.012 7.012 23 C 0.323 3.677 24 O -0.461 6.461 25 H 0.137 0.863 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.247 0.753 29 H 0.250 0.750 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.076 0.924 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.406 -5.627 0.584 17.354 hybrid contribution 2.279 -1.015 0.159 2.500 sum -14.128 -6.642 0.743 15.629 Atomic orbital electron populations 1.22021 0.72845 1.05793 1.03688 1.49661 1.09362 1.01273 1.64799 1.75132 1.09375 1.06807 1.08618 1.24357 0.88985 0.98836 1.00848 1.18779 0.86007 0.92250 0.87522 1.45368 1.01695 1.10734 1.72263 1.21271 0.93098 0.83504 0.97472 1.22408 1.01258 0.98194 0.95648 1.21054 0.86573 0.94422 0.96336 1.44346 1.02575 1.71613 1.14925 1.19467 0.91184 1.36670 0.91662 0.91747 1.25642 1.02107 0.99334 0.97042 1.70133 1.30795 1.48136 1.08571 0.85418 0.81044 0.76754 0.78135 1.21543 1.22446 1.19586 1.20549 0.98959 0.89774 0.85488 1.22284 0.94604 0.99753 1.00775 1.21039 0.91811 0.87699 1.31899 1.98307 1.73309 1.31874 1.97680 1.16648 0.87785 0.84150 0.79159 1.90956 1.70141 1.29956 1.55040 0.86290 0.90336 0.90328 0.75339 0.75011 0.87718 0.89395 0.92552 0.92679 0.94852 0.94156 0.92651 0.97035 0.92416 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.55 10.35 127.77 1.32 2.87 16 2 N -0.43 -9.78 3.91 -494.62 -1.93 -11.72 16 3 N -0.19 -3.59 11.50 -56.44 -0.65 -4.24 16 4 C 0.07 1.24 10.12 85.62 0.87 2.10 16 5 C 0.28 5.79 6.65 38.82 0.26 6.05 16 6 N -0.68 -13.69 5.16 -318.45 -1.64 -15.33 16 7 C 0.15 3.33 2.11 45.01 0.09 3.42 16 8 C -0.14 -3.27 5.60 30.67 0.17 -3.10 16 9 C 0.14 4.66 6.52 86.36 0.56 5.22 16 10 N -0.61 -26.46 3.00 -699.09 -2.09 -28.56 16 11 C -0.26 -13.05 9.59 84.03 0.81 -12.24 16 12 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 13 C -0.05 -2.37 4.91 84.86 0.42 -1.95 16 14 N -0.93 -51.19 11.19 21.65 0.24 -50.95 16 15 Si 0.96 42.53 29.59 68.60 2.03 44.56 16 16 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 17 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 18 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 19 C 0.18 7.26 5.31 86.36 0.46 7.71 16 20 C -0.13 -3.89 5.55 30.67 0.17 -3.72 16 21 C -0.28 -7.30 6.39 22.78 0.15 -7.16 16 22 Cl -0.04 -1.06 27.25 -2.72 -0.07 -1.13 16 23 C 0.52 15.10 7.48 84.74 0.63 15.74 16 24 O -0.58 -20.28 16.62 -5.80 -0.10 -20.37 16 25 H 0.12 1.23 8.09 -2.38 -0.02 1.21 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.23 2.59 6.20 -2.91 -0.02 2.57 16 29 H 0.41 8.51 7.30 -92.71 -0.68 7.83 16 30 H 0.11 1.99 6.47 -2.39 -0.02 1.97 16 31 H 0.09 1.63 7.74 -2.39 -0.02 1.62 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.85 7.93 -2.38 -0.02 1.83 16 34 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.25 13.45 8.31 -92.71 -0.77 12.68 16 36 H 0.06 2.69 6.04 -2.38 -0.01 2.68 16 37 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -65.83 333.04 2.10 -63.73 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.41 Total: 9.06 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 5.91 Total: 14.95 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -6.08 Total: -110.80 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.10 Total: -20.37 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.07 Total: -1.13 kcal Total: -65.83 2.10 -63.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609333759.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.007 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds