Wall clock time and date at job start Fri Apr 10 2020 18:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86804 * 119.99518 * 2 1 4 4 H 1.48500 * 109.47442 * 84.54607 * 3 2 1 5 5 H 1.48497 * 109.46733 * 204.54757 * 3 2 1 6 6 H 1.48504 * 109.47242 * 324.54129 * 3 2 1 7 7 C 1.39006 * 120.00216 * 179.72017 * 2 1 3 8 8 H 1.07994 * 119.99986 * 6.72401 * 7 2 1 9 9 N 1.36888 * 119.99785 * 186.72234 * 7 2 1 10 10 C 1.38220 * 125.61810 * 230.25165 * 9 7 2 11 11 C 1.46885 * 125.43548 * 0.02562 * 10 9 7 12 12 O 1.21670 * 119.99739 * 176.02740 * 11 10 9 13 13 N 1.34779 * 119.99905 * 356.01952 * 11 10 9 14 14 C 1.46504 * 119.99751 * 184.37752 * 13 11 10 15 15 C 1.50694 * 109.47195 * 184.94269 * 14 13 11 16 16 N 1.33311 * 126.55005 * 269.69227 * 15 14 13 17 17 N 1.29004 * 107.35673 * 179.83113 * 16 15 14 18 18 N 1.28780 * 108.72203 * 0.43460 * 17 16 15 19 19 H 0.97003 * 125.45111 * 179.72841 * 18 17 16 20 20 N 1.28890 * 109.10284 * 359.71969 * 18 17 16 21 21 C 1.36125 * 109.12514 * 179.88720 * 10 9 7 22 22 C 1.41703 * 107.74867 * 0.37075 * 21 10 9 23 23 C 1.40022 * 133.34795 * 179.81332 * 22 21 10 24 24 C 1.36574 * 119.82668 * 179.97438 * 23 22 21 25 25 C 1.38855 * 120.60407 * 0.02562 * 24 23 22 26 26 C 1.37844 * 120.63374 * 359.97438 * 25 24 23 27 27 C 1.37837 * 125.62203 * 50.55903 * 9 7 2 28 28 H 0.96997 * 119.99714 * 180.02562 * 1 2 3 29 29 H 0.96993 * 119.99966 * 4.38465 * 13 11 10 30 30 H 1.09002 * 109.46964 * 304.94325 * 14 13 11 31 31 H 1.08996 * 109.46978 * 64.94211 * 14 13 11 32 32 H 1.07994 * 126.12293 * 180.14782 * 21 10 9 33 33 H 1.07991 * 120.08784 * 359.95535 * 23 22 21 34 34 H 1.08005 * 119.70117 * 180.02562 * 24 23 22 35 35 H 1.08000 * 119.68545 * 179.97438 * 25 24 23 36 36 H 1.08001 * 120.09629 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.3796 2.1131 1.3937 5 1 3.5978 1.4098 -0.5817 6 1 1.5072 2.6167 -0.8122 7 6 2.0086 -1.2038 0.0059 8 1 1.4742 -2.1364 -0.0991 9 7 3.3704 -1.2071 0.1447 10 6 4.2610 -1.8801 -0.6705 11 6 3.8976 -2.7082 -1.8279 12 8 4.7680 -3.1990 -2.5220 13 7 2.5999 -2.9244 -2.1209 14 6 2.2369 -3.8272 -3.2162 15 6 0.7433 -3.8013 -3.4144 16 7 -0.1498 -4.5961 -2.8245 17 7 -1.3156 -4.2527 -3.2570 18 7 -1.1769 -3.2853 -4.0957 19 1 -1.8989 -2.8442 -4.5702 20 7 0.0746 -2.9968 -4.2037 21 6 5.5288 -1.6504 -0.2312 22 6 5.4461 -0.8100 0.9068 23 6 6.4045 -0.2556 1.7639 24 6 6.0089 0.5372 2.8032 25 6 4.6626 0.7993 3.0197 26 6 3.7006 0.2649 2.1896 27 6 4.0792 -0.5447 1.1238 28 1 -0.4849 -0.8400 0.0004 29 1 1.9064 -2.4823 -1.6067 30 1 2.7307 -3.5036 -4.1325 31 1 2.5534 -4.8410 -2.9714 32 1 6.4350 -2.0417 -0.6692 33 1 7.4538 -0.4546 1.6037 34 1 6.7499 0.9641 3.4628 35 1 4.3663 1.4279 3.8464 36 1 2.6559 0.4748 2.3657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609532733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:08 Heat of formation + Delta-G solvation = 155.187223 kcal Electronic energy + Delta-G solvation = -25291.533797 eV Core-core repulsion = 21586.604432 eV Total energy + Delta-G solvation = -3704.929365 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.52061 -40.89115 -38.77653 -36.26880 -35.27973 -34.13944 -33.72679 -32.63046 -31.41832 -29.43033 -28.69448 -27.22397 -24.66278 -24.57965 -23.35029 -22.02556 -21.17511 -20.35563 -19.53636 -19.14142 -18.92381 -17.21172 -16.79513 -16.00334 -15.84117 -15.18124 -15.05978 -14.65599 -14.58730 -13.99285 -13.66450 -13.42274 -13.36715 -13.20755 -12.78420 -12.55914 -12.46597 -12.11289 -12.03841 -11.33999 -11.17903 -11.09863 -11.06747 -10.68993 -10.59320 -10.37609 -10.22336 -9.86811 -9.60719 -9.47497 -8.82382 -8.74295 -7.63438 -7.32729 -6.95527 -4.93302 1.08816 1.50930 1.91231 2.26161 2.41267 2.77743 3.06623 3.15780 3.37610 3.60382 3.85519 3.91222 4.03247 4.13671 4.26922 4.49381 4.66941 5.19530 5.43702 5.46515 5.55549 5.63995 5.64844 5.71620 5.86744 6.11049 6.17026 6.35025 6.36130 6.54338 6.67403 6.72572 6.76693 7.14432 7.16345 7.26777 7.39060 7.54694 7.69499 7.96032 8.05551 8.16335 8.34895 8.71140 8.96240 9.94068 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.005047 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.868358 B = 5546.074263 C = 6705.179408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.049 3.951 3 Si 1.039 2.961 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.282 1.282 7 C -0.441 4.441 8 H 0.104 0.896 9 N -0.280 5.280 10 C -0.008 4.008 11 C 0.602 3.398 12 O -0.551 6.551 13 N -0.724 5.724 14 C 0.217 3.783 15 C 0.162 3.838 16 N -0.263 5.263 17 N -0.052 5.052 18 N -0.227 5.227 19 H 0.475 0.525 20 N -0.279 5.279 21 C -0.154 4.154 22 C -0.126 4.126 23 C -0.073 4.073 24 C -0.161 4.161 25 C -0.122 4.122 26 C -0.115 4.115 27 C 0.072 3.928 28 H 0.281 0.719 29 H 0.420 0.580 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 -1.595 -3.645 3.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.166 4.166 3 Si 0.863 3.137 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.121 0.879 9 N 0.054 4.946 10 C -0.123 4.123 11 C 0.391 3.609 12 O -0.429 6.429 13 N -0.387 5.387 14 C 0.090 3.910 15 C -0.122 4.122 16 N -0.136 5.136 17 N -0.047 5.047 18 N -0.073 5.073 19 H 0.329 0.671 20 N -0.131 5.131 21 C -0.182 4.182 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.180 4.180 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.042 4.042 28 H 0.092 0.908 29 H 0.267 0.733 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.158 0.842 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.275 -0.603 -4.128 4.181 hybrid contribution -0.612 -1.086 -0.113 1.252 sum -0.887 -1.689 -4.240 4.650 Atomic orbital electron populations 1.70828 1.06203 1.31483 1.37796 1.26778 0.96060 1.02612 0.91155 0.84036 0.76020 0.74391 0.79217 1.18262 1.18925 1.20867 1.20655 0.79291 0.96752 1.60026 0.87938 1.40314 1.04962 1.32929 1.16431 1.20223 0.90349 1.05639 0.96046 1.17131 0.81725 0.79128 0.82931 1.90745 1.49088 1.52134 1.50979 1.46714 1.09315 1.47610 1.35082 1.19332 0.81653 0.96717 0.93288 1.25622 0.99664 0.92132 0.94746 1.75909 0.94350 1.22614 1.20763 1.78958 1.19164 1.02717 1.03888 1.47803 1.06821 1.23536 1.29150 0.67133 1.74765 0.91333 1.23526 1.23498 1.20499 0.95172 1.03855 0.98627 1.18031 0.92520 1.03493 0.99033 1.20202 0.97610 0.97082 0.94258 1.20385 0.95518 1.02487 0.99629 1.20630 0.92699 1.01346 0.99520 1.20228 0.99853 0.98714 0.94674 1.18524 0.91256 1.01554 0.92848 0.90815 0.73292 0.88285 0.88370 0.84195 0.86958 0.87094 0.86748 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.33 13.69 55.50 0.76 -20.57 16 2 C 0.05 1.22 5.29 -17.47 -0.09 1.12 16 3 Si 1.04 23.53 24.26 -169.99 -4.12 19.41 16 4 H -0.26 -5.43 5.91 56.52 0.33 -5.09 16 5 H -0.26 -6.23 6.81 56.52 0.38 -5.85 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.44 -10.75 8.07 -15.01 -0.12 -10.87 16 8 H 0.10 2.57 6.51 -52.49 -0.34 2.22 16 9 N -0.28 -6.67 2.35 -56.08 -0.13 -6.81 16 10 C -0.01 -0.19 6.77 -82.25 -0.56 -0.75 16 11 C 0.60 12.94 7.77 -12.76 -0.10 12.84 16 12 O -0.55 -12.20 16.83 5.22 0.09 -12.11 16 13 N -0.72 -14.11 5.48 -62.73 -0.34 -14.45 16 14 C 0.22 3.44 6.32 -5.19 -0.03 3.41 16 15 C 0.16 2.54 7.74 -156.63 -1.21 1.33 16 16 N -0.26 -4.26 12.50 32.44 0.41 -3.85 16 17 N -0.05 -0.74 13.48 60.35 0.81 0.08 16 18 N -0.23 -2.66 7.91 60.34 0.48 -2.18 16 19 H 0.47 3.19 8.96 -340.52 -3.05 0.14 16 20 N -0.28 -4.04 12.36 32.46 0.40 -3.64 16 21 C -0.15 -3.29 10.55 -39.02 -0.41 -3.71 16 22 C -0.13 -2.68 6.16 -106.89 -0.66 -3.33 16 23 C -0.07 -1.31 10.06 -39.51 -0.40 -1.70 16 24 C -0.16 -2.69 9.97 -39.95 -0.40 -3.09 16 25 C -0.12 -2.18 10.02 -39.50 -0.40 -2.58 16 26 C -0.11 -2.43 6.91 -39.41 -0.27 -2.70 16 27 C 0.07 1.64 4.86 -83.83 -0.41 1.24 16 28 H 0.28 7.03 8.72 -40.82 -0.36 6.68 16 29 H 0.42 8.83 4.24 -40.82 -0.17 8.65 16 30 H 0.10 1.46 8.11 -51.93 -0.42 1.04 16 31 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.14 2.69 8.06 -52.49 -0.42 2.26 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 35 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.12 2.60 6.05 -52.49 -0.32 2.28 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -29.54 312.15 -7.66 -37.20 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.66 Total: 11.01 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -5.06 Total: -8.79 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 2.38 Total: -51.42 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.09 Total: -12.11 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.12 Total: 19.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.54 -7.66 -37.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609532733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.387 kcal (2) G-P(sol) polarization free energy of solvation -29.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds