Wall clock time and date at job start Fri Apr 10 2020 18:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31350 * 1 3 3 Si 1.86804 * 119.99518 * 2 1 4 4 H 1.48500 * 109.47442 * 84.54607 * 3 2 1 5 5 H 1.48497 * 109.46733 * 204.54757 * 3 2 1 6 6 H 1.48504 * 109.47242 * 324.54129 * 3 2 1 7 7 C 1.39006 * 120.00216 * 179.72017 * 2 1 3 8 8 H 1.07994 * 119.99986 * 6.72401 * 7 2 1 9 9 N 1.36888 * 119.99785 * 186.72234 * 7 2 1 10 10 C 1.38220 * 125.61810 * 230.25165 * 9 7 2 11 11 C 1.46885 * 125.43548 * 0.02562 * 10 9 7 12 12 O 1.21670 * 119.99739 * 176.02740 * 11 10 9 13 13 N 1.34779 * 119.99905 * 356.01952 * 11 10 9 14 14 C 1.46504 * 119.99751 * 184.37752 * 13 11 10 15 15 C 1.50694 * 109.47195 * 184.94269 * 14 13 11 16 16 N 1.33311 * 126.55005 * 269.69227 * 15 14 13 17 17 N 1.29004 * 107.35673 * 179.83113 * 16 15 14 18 18 N 1.28780 * 108.72203 * 0.43460 * 17 16 15 19 19 H 0.97003 * 125.45111 * 179.72841 * 18 17 16 20 20 N 1.28890 * 109.10284 * 359.71969 * 18 17 16 21 21 C 1.36125 * 109.12514 * 179.88720 * 10 9 7 22 22 C 1.41703 * 107.74867 * 0.37075 * 21 10 9 23 23 C 1.40022 * 133.34795 * 179.81332 * 22 21 10 24 24 C 1.36574 * 119.82668 * 179.97438 * 23 22 21 25 25 C 1.38855 * 120.60407 * 0.02562 * 24 23 22 26 26 C 1.37844 * 120.63374 * 359.97438 * 25 24 23 27 27 C 1.37837 * 125.62203 * 50.55903 * 9 7 2 28 28 H 0.96997 * 119.99714 * 180.02562 * 1 2 3 29 29 H 0.96993 * 119.99966 * 4.38465 * 13 11 10 30 30 H 1.09002 * 109.46964 * 304.94325 * 14 13 11 31 31 H 1.08996 * 109.46978 * 64.94211 * 14 13 11 32 32 H 1.07994 * 126.12293 * 180.14782 * 21 10 9 33 33 H 1.07991 * 120.08784 * 359.95535 * 23 22 21 34 34 H 1.08005 * 119.70117 * 180.02562 * 24 23 22 35 35 H 1.08000 * 119.68545 * 179.97438 * 25 24 23 36 36 H 1.08001 * 120.09629 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2474 1.6178 0.0000 4 1 2.3796 2.1131 1.3937 5 1 3.5978 1.4098 -0.5817 6 1 1.5072 2.6167 -0.8122 7 6 2.0086 -1.2038 0.0059 8 1 1.4742 -2.1364 -0.0991 9 7 3.3704 -1.2071 0.1447 10 6 4.2610 -1.8801 -0.6705 11 6 3.8976 -2.7082 -1.8279 12 8 4.7680 -3.1990 -2.5220 13 7 2.5999 -2.9244 -2.1209 14 6 2.2369 -3.8272 -3.2162 15 6 0.7433 -3.8013 -3.4144 16 7 -0.1498 -4.5961 -2.8245 17 7 -1.3156 -4.2527 -3.2570 18 7 -1.1769 -3.2853 -4.0957 19 1 -1.8989 -2.8442 -4.5702 20 7 0.0746 -2.9968 -4.2037 21 6 5.5288 -1.6504 -0.2312 22 6 5.4461 -0.8100 0.9068 23 6 6.4045 -0.2556 1.7639 24 6 6.0089 0.5372 2.8032 25 6 4.6626 0.7993 3.0197 26 6 3.7006 0.2649 2.1896 27 6 4.0792 -0.5447 1.1238 28 1 -0.4849 -0.8400 0.0004 29 1 1.9064 -2.4823 -1.6067 30 1 2.7307 -3.5036 -4.1325 31 1 2.5534 -4.8410 -2.9714 32 1 6.4350 -2.0417 -0.6692 33 1 7.4538 -0.4546 1.6037 34 1 6.7499 0.9641 3.4628 35 1 4.3663 1.4279 3.8464 36 1 2.6559 0.4748 2.3657 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609532733.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:07 Heat of formation + Delta-G solvation = 134.320436 kcal Electronic energy + Delta-G solvation = -25292.438648 eV Core-core repulsion = 21586.604432 eV Total energy + Delta-G solvation = -3705.834217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.67652 -42.51330 -40.37300 -37.80450 -36.70114 -35.55437 -35.26510 -33.96135 -33.07280 -30.94146 -30.23437 -28.61291 -26.41439 -25.74736 -24.81559 -23.31797 -22.77744 -21.89456 -21.08285 -20.72935 -20.29160 -18.54456 -18.22942 -17.65482 -17.27471 -16.85278 -16.59519 -16.22769 -15.99166 -15.52625 -15.19514 -14.95415 -14.84677 -14.69960 -14.28571 -14.12481 -14.03320 -13.62985 -13.25551 -12.87004 -12.51550 -12.47828 -12.29025 -12.17876 -12.16306 -11.96266 -11.86934 -11.53872 -11.23508 -11.19965 -10.47428 -10.28755 -9.46152 -8.96176 -8.59050 -6.79863 -0.05299 -0.04643 0.65716 0.91196 1.15275 1.27596 1.31781 1.35810 1.58506 2.05166 2.20523 2.33609 2.47615 2.60649 2.70987 3.06870 3.14307 3.79767 4.01482 4.06920 4.27172 4.31603 4.40112 4.42158 4.46091 4.59202 4.68010 4.82145 5.02955 5.10362 5.19608 5.23337 5.33744 5.49739 5.62571 5.71608 5.81816 5.97817 6.06847 6.30818 6.36951 6.62167 6.99567 7.06282 7.20043 8.03745 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.016998 B = 0.005047 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.868358 B = 5546.074263 C = 6705.179408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.025 3.975 3 Si 1.066 2.934 4 H -0.234 1.234 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.435 4.435 8 H 0.085 0.915 9 N -0.303 5.303 10 C -0.038 4.038 11 C 0.599 3.401 12 O -0.564 6.564 13 N -0.724 5.724 14 C 0.216 3.784 15 C 0.152 3.848 16 N -0.287 5.287 17 N -0.054 5.054 18 N -0.199 5.199 19 H 0.494 0.506 20 N -0.284 5.284 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.070 4.070 24 C -0.152 4.152 25 C -0.102 4.102 26 C -0.153 4.153 27 C 0.052 3.948 28 H 0.274 0.726 29 H 0.413 0.587 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.147 0.853 34 H 0.158 0.842 35 H 0.149 0.851 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -0.464 -2.622 3.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.186 4.186 3 Si 0.888 3.112 4 H -0.157 1.157 5 H -0.206 1.206 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.102 0.898 9 N 0.029 4.971 10 C -0.151 4.151 11 C 0.388 3.612 12 O -0.444 6.444 13 N -0.383 5.383 14 C 0.090 3.910 15 C -0.131 4.131 16 N -0.160 5.160 17 N -0.049 5.049 18 N -0.050 5.050 19 H 0.353 0.647 20 N -0.137 5.137 21 C -0.177 4.177 22 C -0.150 4.150 23 C -0.089 4.089 24 C -0.171 4.171 25 C -0.122 4.122 26 C -0.174 4.174 27 C -0.061 4.061 28 H 0.084 0.916 29 H 0.258 0.742 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.176 0.824 33 H 0.165 0.835 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.543 0.516 -3.106 3.506 hybrid contribution -1.065 -1.439 -0.359 1.826 sum 0.477 -0.923 -3.465 3.617 Atomic orbital electron populations 1.70870 1.06670 1.31011 1.40448 1.27402 0.96111 1.04282 0.90801 0.83697 0.74365 0.72815 0.80304 1.15748 1.20628 1.20974 1.20436 0.80073 0.95978 1.59733 0.89759 1.40316 1.04580 1.34536 1.17710 1.20579 0.91068 1.06411 0.97012 1.17112 0.82208 0.79122 0.82796 1.90716 1.49369 1.52894 1.51411 1.46688 1.08453 1.47613 1.35590 1.19500 0.82194 0.96680 0.92606 1.25538 0.99624 0.92617 0.95323 1.75888 0.94899 1.23551 1.21639 1.78893 1.18534 1.03233 1.04247 1.47847 1.06726 1.22443 1.27950 0.64682 1.74722 0.92198 1.23339 1.23469 1.20834 0.95269 1.03161 0.98433 1.18424 0.92700 1.04119 0.99718 1.20676 0.98737 0.96031 0.93429 1.20917 0.95837 1.01036 0.99328 1.21165 0.92830 0.99457 0.98754 1.20354 1.00156 1.00875 0.95972 1.18992 0.92133 1.01702 0.93275 0.91579 0.74177 0.87085 0.87044 0.82380 0.83501 0.82455 0.83303 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -45.25 13.69 21.67 0.30 -44.96 16 2 C 0.02 1.25 5.29 84.95 0.45 1.70 16 3 Si 1.07 48.08 24.26 68.60 1.66 49.75 16 4 H -0.23 -9.51 5.91 99.48 0.59 -8.92 16 5 H -0.28 -13.29 6.81 99.48 0.68 -12.61 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 7 C -0.44 -22.06 8.07 84.09 0.68 -21.38 16 8 H 0.09 4.47 6.51 -2.91 -0.02 4.45 16 9 N -0.30 -14.74 2.35 -331.35 -0.78 -15.52 16 10 C -0.04 -1.75 6.77 39.91 0.27 -1.48 16 11 C 0.60 26.25 7.77 86.51 0.67 26.92 16 12 O -0.56 -25.10 16.83 -4.25 -0.07 -25.17 16 13 N -0.72 -29.00 5.48 -470.62 -2.58 -31.58 16 14 C 0.22 6.94 6.32 85.63 0.54 7.48 16 15 C 0.15 4.83 7.74 138.55 1.07 5.90 16 16 N -0.29 -9.39 12.50 -51.27 -0.64 -10.03 16 17 N -0.05 -1.52 13.48 37.02 0.50 -1.02 16 18 N -0.20 -4.52 7.91 37.00 0.29 -4.23 16 19 H 0.49 6.09 8.96 -347.66 -3.12 2.98 16 20 N -0.28 -8.15 12.36 -51.21 -0.63 -8.79 16 21 C -0.15 -6.28 10.55 22.63 0.24 -6.04 16 22 C -0.14 -5.92 6.16 -21.33 -0.13 -6.05 16 23 C -0.07 -2.24 10.06 22.31 0.22 -2.01 16 24 C -0.15 -4.30 9.97 22.03 0.22 -4.08 16 25 C -0.10 -3.27 10.02 22.32 0.22 -3.05 16 26 C -0.15 -6.29 6.91 22.38 0.15 -6.13 16 27 C 0.05 2.35 4.86 39.06 0.19 2.54 16 28 H 0.27 14.30 8.72 -92.71 -0.81 13.49 16 29 H 0.41 18.14 4.24 -92.71 -0.39 17.75 16 30 H 0.11 3.28 8.11 -2.39 -0.02 3.26 16 31 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.16 5.86 8.06 -2.91 -0.02 5.84 16 33 H 0.15 3.63 8.06 -2.92 -0.02 3.61 16 34 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 36 H 0.11 4.58 6.05 -2.91 -0.02 4.56 16 Total: -1.00 -65.08 312.15 0.34 -64.74 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -2.52 Total: 32.48 kcal Atomic # 6 Polarization: -10.47 SS G_CDS: 4.80 Total: -5.67 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.54 Total: -116.13 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.07 Total: -25.17 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.66 Total: 49.75 kcal Total: -65.08 0.34 -64.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609532733.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.065 kcal (2) G-P(sol) polarization free energy of solvation -65.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds