Wall clock time and date at job start Fri Apr 10 2020 18:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46947 * 2 1 4 4 C 1.36871 * 120.00172 * 80.55112 * 3 2 1 5 5 H 1.07998 * 120.00199 * 172.55428 * 4 3 2 6 6 C 1.39052 * 120.00059 * 352.56232 * 4 3 2 7 7 N 1.31362 * 120.00072 * 19.39458 * 6 4 3 8 8 Si 1.86805 * 120.00182 * 199.40547 * 6 4 3 9 9 H 1.48494 * 109.47510 * 89.99342 * 8 6 4 10 10 H 1.48496 * 109.46948 * 209.99737 * 8 6 4 11 11 H 1.48504 * 109.46713 * 329.99372 * 8 6 4 12 12 C 1.34777 * 119.99871 * 260.55103 * 3 2 1 13 13 O 1.21585 * 119.99811 * 180.83632 * 12 3 2 14 14 C 1.47723 * 119.99946 * 0.83467 * 12 3 2 15 15 C 1.39670 * 120.15139 * 217.84821 * 14 12 3 16 16 C 1.37911 * 119.84688 * 180.02562 * 15 14 12 17 17 C 1.38400 * 120.15344 * 0.02562 * 16 15 14 18 18 S 1.76202 * 119.84843 * 179.97438 * 17 16 15 19 19 N 1.65594 * 107.21802 * 114.99847 * 18 17 16 20 20 O 1.42100 * 106.40052 * 228.54196 * 18 17 16 21 21 O 1.42102 * 106.39889 * 1.45719 * 18 17 16 22 22 C 1.38350 * 120.30370 * 0.25169 * 17 16 15 23 23 C 1.50700 * 119.92317 * 179.72539 * 22 17 16 24 24 C 1.37961 * 120.15399 * 359.48768 * 22 17 16 25 25 H 1.08997 * 109.46872 * 41.55989 * 1 2 3 26 26 H 1.09003 * 109.47012 * 161.55030 * 1 2 3 27 27 H 1.08989 * 109.47630 * 281.55643 * 1 2 3 28 28 H 1.08992 * 109.47445 * 239.99410 * 2 1 3 29 29 H 1.09004 * 109.46820 * 119.99552 * 2 1 3 30 30 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 31 31 H 1.07999 * 120.07113 * 359.97438 * 15 14 12 32 32 H 1.08000 * 119.92509 * 179.97438 * 16 15 14 33 33 H 0.97001 * 119.99622 * 180.02562 * 19 18 17 34 34 H 0.97000 * 120.00244 * 359.97438 * 19 18 17 35 35 H 1.08994 * 109.47263 * 90.00090 * 23 22 17 36 36 H 1.09001 * 109.46862 * 209.99992 * 23 22 17 37 37 H 1.09002 * 109.47317 * 329.99947 * 23 22 17 38 38 H 1.08002 * 120.07870 * 180.24727 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0630 2.0914 1.1692 5 1 2.5328 3.0635 1.1930 6 6 1.5036 1.5611 2.3266 7 7 1.2802 0.2697 2.4160 8 14 1.0695 2.6851 3.7541 9 1 -0.3262 3.1674 3.5977 10 1 1.1942 1.9355 5.0299 11 1 1.9956 3.8459 3.7693 12 6 2.4236 1.9527 -1.1514 13 8 2.8431 3.0939 -1.1489 14 6 2.3581 1.1925 -2.4163 15 6 3.3693 1.3291 -3.3700 16 6 3.3016 0.6168 -4.5490 17 6 2.2345 -0.2314 -4.7885 18 16 2.1557 -1.1371 -6.2978 19 7 2.2774 -2.7431 -5.9128 20 8 0.8450 -0.9460 -6.8125 21 8 3.3317 -0.8085 -7.0247 22 6 1.2265 -0.3671 -3.8506 23 6 0.0654 -1.2883 -4.1229 24 6 1.2842 0.3354 -2.6646 25 1 -0.3633 0.7690 -0.6817 26 1 -0.3633 -0.9749 -0.3252 27 1 -0.3634 0.2058 1.0067 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 0.8896 -0.1003 3.2232 31 1 4.2019 1.9915 -3.1848 32 1 4.0827 0.7217 -5.2875 33 1 2.2550 -3.4129 -6.6140 34 1 2.3719 -3.0138 -4.9861 35 1 0.2977 -2.2858 -3.7500 36 1 -0.8243 -0.9102 -3.6192 37 1 -0.1173 -1.3352 -5.1965 38 1 0.4986 0.2255 -1.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609910620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:10 Heat of formation + Delta-G solvation = -52.417221 kcal Electronic energy + Delta-G solvation = -24430.518826 eV Core-core repulsion = 20787.445506 eV Total energy + Delta-G solvation = -3643.073320 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -39.91871 -37.95958 -37.23773 -35.86769 -35.46509 -33.47842 -32.54143 -32.43192 -30.89756 -29.68180 -26.87545 -25.71425 -23.55051 -22.35235 -21.73622 -19.72855 -19.20024 -18.16649 -17.53833 -17.19495 -16.58731 -16.23759 -15.88738 -15.11829 -14.83831 -14.55174 -14.41964 -13.88722 -13.59299 -13.40610 -13.24185 -12.80184 -12.53509 -12.39930 -12.18820 -12.12886 -12.11373 -11.89145 -11.64951 -11.45305 -11.21506 -11.09070 -10.85008 -10.63681 -10.56644 -10.48977 -10.30780 -10.16070 -9.21430 -9.00213 -8.61270 -8.60201 -8.01671 -6.45765 -4.02999 0.37028 0.77023 1.50557 2.95834 3.07234 3.12398 3.16942 3.32488 3.60323 3.88814 4.07885 4.56218 4.59969 4.76502 4.91344 4.99632 5.26327 5.44442 5.48478 5.55428 5.63387 5.79778 5.84880 5.93006 6.05296 6.19552 6.27106 6.27862 6.40281 6.41307 6.52259 6.67599 6.86387 7.01252 7.12396 7.27950 7.50469 7.84541 8.30867 8.91967 9.16448 9.73716 10.34302 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.029410 B = 0.003817 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.817477 B = 7332.983172 C = 7905.272275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.079 3.921 3 N -0.416 5.416 4 C -0.294 4.294 5 H 0.110 0.890 6 C 0.032 3.968 7 N -0.859 5.859 8 Si 0.932 3.068 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.267 1.267 12 C 0.452 3.548 13 O -0.589 6.589 14 C -0.023 4.023 15 C -0.111 4.111 16 C -0.023 4.023 17 C -0.684 4.684 18 S 2.707 3.293 19 N -1.251 6.251 20 O -0.966 6.966 21 O -0.971 6.971 22 C 0.007 3.993 23 C -0.171 4.171 24 C -0.142 4.142 25 H 0.038 0.962 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.142 0.858 30 H 0.271 0.729 31 H 0.137 0.863 32 H 0.143 0.857 33 H 0.418 0.582 34 H 0.418 0.582 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -10.020 -9.767 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.043 4.043 3 N -0.131 5.131 4 C -0.421 4.421 5 H 0.128 0.872 6 C -0.171 4.171 7 N -0.499 5.499 8 Si 0.758 3.242 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.191 1.191 12 C 0.242 3.758 13 O -0.476 6.476 14 C -0.027 4.027 15 C -0.131 4.131 16 C -0.043 4.043 17 C -0.774 4.774 18 S 2.798 3.202 19 N -0.925 5.925 20 O -0.955 6.955 21 O -0.961 6.961 22 C 0.005 3.995 23 C -0.228 4.228 24 C -0.161 4.161 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.159 0.841 30 H 0.083 0.917 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.248 0.752 34 H 0.245 0.755 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.327 -9.057 -10.453 13.895 hybrid contribution -0.195 0.092 1.634 1.648 sum -1.522 -8.966 -8.819 12.668 Atomic orbital electron populations 1.22254 0.97208 0.98733 1.03060 1.22525 0.94321 0.83741 1.03756 1.43895 1.51230 1.11849 1.06100 1.19914 1.34673 1.02033 0.85507 0.87214 1.25346 0.96369 0.96161 0.99259 1.69749 1.41443 1.10290 1.28415 0.85823 0.79442 0.79944 0.79039 1.20046 1.20746 1.19115 1.17818 0.87236 0.87577 0.83177 1.90634 1.52900 1.18294 1.85805 1.20687 0.93662 0.92995 0.95394 1.21295 0.99148 0.99701 0.92995 1.20790 0.94914 0.92112 0.96490 1.30037 1.05387 1.19679 1.22252 1.01263 0.73804 0.72347 0.72811 1.53058 1.94684 1.26695 1.18088 1.93536 1.39457 1.84976 1.77521 1.93563 1.49643 1.83080 1.69792 1.19461 0.92982 0.94871 0.92160 1.21623 0.96573 0.98402 1.06182 1.22293 0.99924 0.96490 0.97402 0.94356 0.93825 0.90162 0.93855 0.84068 0.91716 0.84541 0.83915 0.75231 0.75522 0.90021 0.89740 0.87683 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.17 37.16 0.30 -2.62 16 2 C 0.08 1.66 4.87 -4.04 -0.02 1.64 16 3 N -0.42 -10.13 2.64 -115.93 -0.31 -10.44 16 4 C -0.29 -7.64 9.44 -15.00 -0.14 -7.79 16 5 H 0.11 3.04 7.25 -52.49 -0.38 2.66 16 6 C 0.03 0.77 4.96 -17.45 -0.09 0.68 16 7 N -0.86 -19.90 8.02 55.50 0.45 -19.46 16 8 Si 0.93 19.19 29.60 -169.99 -5.03 14.16 16 9 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 C 0.45 11.06 7.31 -12.38 -0.09 10.97 16 13 O -0.59 -16.39 16.47 5.29 0.09 -16.31 16 14 C -0.02 -0.46 5.19 -104.97 -0.55 -1.01 16 15 C -0.11 -1.98 9.63 -39.17 -0.38 -2.36 16 16 C -0.02 -0.35 9.53 -39.64 -0.38 -0.73 16 17 C -0.68 -9.60 5.88 -39.48 -0.23 -9.84 16 18 S 2.71 32.00 5.59 -107.50 -0.60 31.40 16 19 N -1.25 -9.12 9.40 60.35 0.57 -8.55 16 20 O -0.97 -13.68 15.34 -57.17 -0.88 -14.56 16 21 O -0.97 -14.10 16.95 -57.17 -0.97 -15.07 16 22 C 0.01 0.10 5.87 -104.68 -0.61 -0.51 16 23 C -0.17 -1.94 9.40 36.01 0.34 -1.60 16 24 C -0.14 -2.46 7.07 -39.16 -0.28 -2.73 16 25 H 0.04 0.72 6.75 -51.93 -0.35 0.37 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.08 1.67 6.19 -51.94 -0.32 1.35 16 28 H 0.04 0.82 5.10 -51.93 -0.26 0.55 16 29 H 0.14 3.21 5.43 -51.93 -0.28 2.93 16 30 H 0.27 5.93 8.31 -40.82 -0.34 5.59 16 31 H 0.14 2.37 8.04 -52.49 -0.42 1.95 16 32 H 0.14 1.86 7.32 -52.49 -0.38 1.48 16 33 H 0.42 2.11 8.96 -34.46 -0.31 1.80 16 34 H 0.42 2.34 8.92 -34.47 -0.31 2.03 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.50 16 37 H 0.10 1.21 4.80 -51.93 -0.25 0.96 16 38 H 0.16 2.68 3.17 -52.49 -0.17 2.51 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -32.61 317.25 -7.86 -40.47 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -3.84 Total: 9.47 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.12 Total: -15.90 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.71 Total: -38.45 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.76 Total: -45.93 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Atomic # 16 Polarization: 32.00 SS G_CDS: -0.60 Total: 31.40 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.61 -7.86 -40.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609910620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.943 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds