Wall clock time and date at job start Fri Apr 10 2020 18:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46947 * 2 1 4 4 C 1.36871 * 120.00172 * 80.55112 * 3 2 1 5 5 H 1.07998 * 120.00199 * 172.55428 * 4 3 2 6 6 C 1.39052 * 120.00059 * 352.56232 * 4 3 2 7 7 N 1.31362 * 120.00072 * 19.39458 * 6 4 3 8 8 Si 1.86805 * 120.00182 * 199.40547 * 6 4 3 9 9 H 1.48494 * 109.47510 * 89.99342 * 8 6 4 10 10 H 1.48496 * 109.46948 * 209.99737 * 8 6 4 11 11 H 1.48504 * 109.46713 * 329.99372 * 8 6 4 12 12 C 1.34777 * 119.99871 * 260.55103 * 3 2 1 13 13 O 1.21585 * 119.99811 * 180.83632 * 12 3 2 14 14 C 1.47723 * 119.99946 * 0.83467 * 12 3 2 15 15 C 1.39670 * 120.15139 * 217.84821 * 14 12 3 16 16 C 1.37911 * 119.84688 * 180.02562 * 15 14 12 17 17 C 1.38400 * 120.15344 * 0.02562 * 16 15 14 18 18 S 1.76202 * 119.84843 * 179.97438 * 17 16 15 19 19 N 1.65594 * 107.21802 * 114.99847 * 18 17 16 20 20 O 1.42100 * 106.40052 * 228.54196 * 18 17 16 21 21 O 1.42102 * 106.39889 * 1.45719 * 18 17 16 22 22 C 1.38350 * 120.30370 * 0.25169 * 17 16 15 23 23 C 1.50700 * 119.92317 * 179.72539 * 22 17 16 24 24 C 1.37961 * 120.15399 * 359.48768 * 22 17 16 25 25 H 1.08997 * 109.46872 * 41.55989 * 1 2 3 26 26 H 1.09003 * 109.47012 * 161.55030 * 1 2 3 27 27 H 1.08989 * 109.47630 * 281.55643 * 1 2 3 28 28 H 1.08992 * 109.47445 * 239.99410 * 2 1 3 29 29 H 1.09004 * 109.46820 * 119.99552 * 2 1 3 30 30 H 0.97000 * 120.00447 * 180.02562 * 7 6 4 31 31 H 1.07999 * 120.07113 * 359.97438 * 15 14 12 32 32 H 1.08000 * 119.92509 * 179.97438 * 16 15 14 33 33 H 0.97001 * 119.99622 * 180.02562 * 19 18 17 34 34 H 0.97000 * 120.00244 * 359.97438 * 19 18 17 35 35 H 1.08994 * 109.47263 * 90.00090 * 23 22 17 36 36 H 1.09001 * 109.46862 * 209.99992 * 23 22 17 37 37 H 1.09002 * 109.47317 * 329.99947 * 23 22 17 38 38 H 1.08002 * 120.07870 * 180.24727 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0630 2.0914 1.1692 5 1 2.5328 3.0635 1.1930 6 6 1.5036 1.5611 2.3266 7 7 1.2802 0.2697 2.4160 8 14 1.0695 2.6851 3.7541 9 1 -0.3262 3.1674 3.5977 10 1 1.1942 1.9355 5.0299 11 1 1.9956 3.8459 3.7693 12 6 2.4236 1.9527 -1.1514 13 8 2.8431 3.0939 -1.1489 14 6 2.3581 1.1925 -2.4163 15 6 3.3693 1.3291 -3.3700 16 6 3.3016 0.6168 -4.5490 17 6 2.2345 -0.2314 -4.7885 18 16 2.1557 -1.1371 -6.2978 19 7 2.2774 -2.7431 -5.9128 20 8 0.8450 -0.9460 -6.8125 21 8 3.3317 -0.8085 -7.0247 22 6 1.2265 -0.3671 -3.8506 23 6 0.0654 -1.2883 -4.1229 24 6 1.2842 0.3354 -2.6646 25 1 -0.3633 0.7690 -0.6817 26 1 -0.3633 -0.9749 -0.3252 27 1 -0.3634 0.2058 1.0067 28 1 1.8934 -0.5139 -0.8898 29 1 1.8933 -0.5138 0.8901 30 1 0.8896 -0.1003 3.2232 31 1 4.2019 1.9915 -3.1848 32 1 4.0827 0.7217 -5.2875 33 1 2.2550 -3.4129 -6.6140 34 1 2.3719 -3.0138 -4.9861 35 1 0.2977 -2.2858 -3.7500 36 1 -0.8243 -0.9102 -3.6192 37 1 -0.1173 -1.3352 -5.1965 38 1 0.4986 0.2255 -1.9317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609910620.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:10 Heat of formation + Delta-G solvation = -77.309680 kcal Electronic energy + Delta-G solvation = -24431.598244 eV Core-core repulsion = 20787.445506 eV Total energy + Delta-G solvation = -3644.152738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45162 -39.50637 -38.30777 -37.31829 -36.93074 -34.33863 -34.15836 -33.61079 -32.44025 -31.28650 -27.97237 -27.47803 -25.04048 -23.95258 -23.07438 -20.99321 -20.47334 -19.18903 -19.05220 -18.47737 -18.16238 -17.30457 -17.00637 -16.71218 -16.18431 -16.08855 -15.91232 -15.39583 -14.98453 -14.78039 -14.64639 -14.16506 -13.88939 -13.71059 -13.47872 -13.44093 -13.19332 -13.15236 -13.10625 -12.87945 -12.76175 -12.51328 -12.27357 -12.16443 -12.08718 -11.80910 -11.70477 -11.29113 -11.00953 -10.63513 -10.27922 -9.91109 -9.80217 -8.27621 -5.97962 -0.68728 -0.46979 0.21718 1.31605 1.41197 1.50966 1.76244 2.17512 2.19036 2.41376 2.69585 2.89940 3.04279 3.46421 3.65316 3.73140 3.87796 4.14488 4.29612 4.38205 4.51110 4.58471 4.70875 4.75975 4.77189 4.82992 4.94179 5.02425 5.17589 5.24049 5.30205 5.32166 5.36794 5.60586 5.68926 5.76021 6.00400 6.41123 6.46516 7.03733 7.32506 7.88882 8.49687 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.029410 B = 0.003817 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.817477 B = 7332.983172 C = 7905.272275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.080 3.920 3 N -0.423 5.423 4 C -0.346 4.346 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.856 5.856 8 Si 0.987 3.013 9 H -0.270 1.270 10 H -0.264 1.264 11 H -0.279 1.279 12 C 0.437 3.563 13 O -0.642 6.642 14 C -0.052 4.052 15 C -0.126 4.126 16 C -0.018 4.018 17 C -0.678 4.678 18 S 2.740 3.260 19 N -1.230 6.230 20 O -0.983 6.983 21 O -0.994 6.994 22 C 0.018 3.982 23 C -0.176 4.176 24 C -0.147 4.147 25 H 0.033 0.967 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.280 0.720 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.433 0.567 34 H 0.430 0.570 35 H 0.120 0.880 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.731 -13.149 -11.011 17.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 N -0.137 5.137 4 C -0.474 4.474 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.494 5.494 8 Si 0.810 3.190 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.205 1.205 12 C 0.228 3.772 13 O -0.533 6.533 14 C -0.055 4.055 15 C -0.146 4.146 16 C -0.037 4.037 17 C -0.765 4.765 18 S 2.827 3.173 19 N -0.912 5.912 20 O -0.972 6.972 21 O -0.984 6.984 22 C 0.016 3.984 23 C -0.232 4.232 24 C -0.166 4.166 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.142 0.858 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.183 0.817 33 H 0.266 0.734 34 H 0.260 0.740 35 H 0.138 0.862 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.736 -12.246 -11.675 17.140 hybrid contribution 0.244 0.926 1.876 2.106 sum -2.492 -11.320 -9.800 15.179 Atomic orbital electron populations 1.22131 0.95489 1.00837 1.01797 1.22586 0.95679 0.81944 1.03938 1.44060 1.51112 1.12916 1.05607 1.19706 1.38221 1.02034 0.87404 0.90747 1.25903 0.95132 0.97433 1.00371 1.69821 1.39954 1.10471 1.29138 0.85040 0.78774 0.78136 0.77039 1.19579 1.18841 1.20460 1.18577 0.86497 0.87464 0.84687 1.90561 1.55080 1.20738 1.86968 1.20432 0.96133 0.94928 0.94031 1.21323 0.98846 1.00515 0.93895 1.21012 0.95854 0.91258 0.95607 1.30548 1.04265 1.18841 1.22854 1.00331 0.72868 0.72884 0.71209 1.52574 1.94196 1.24942 1.19461 1.93525 1.40434 1.85786 1.77459 1.93545 1.50671 1.84086 1.70055 1.19827 0.93826 0.94066 0.90647 1.21813 0.95275 0.99459 1.06666 1.22313 0.99011 0.96414 0.98851 0.94839 0.89757 0.92278 0.91691 0.85768 0.90852 0.85481 0.81738 0.73352 0.73998 0.86190 0.88927 0.87401 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 8.17 71.98 0.59 -4.72 16 2 C 0.08 3.37 4.87 86.38 0.42 3.79 16 3 N -0.42 -21.61 2.64 -638.95 -1.69 -23.30 16 4 C -0.35 -19.09 9.44 84.10 0.79 -18.30 16 5 H 0.07 4.51 7.25 -2.91 -0.02 4.49 16 6 C 0.02 0.78 4.96 84.96 0.42 1.20 16 7 N -0.86 -39.54 8.02 21.68 0.17 -39.37 16 8 Si 0.99 39.88 29.60 68.60 2.03 41.91 16 9 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.44 22.69 7.31 86.75 0.63 23.33 16 13 O -0.64 -38.68 16.47 -3.98 -0.07 -38.75 16 14 C -0.05 -2.12 5.19 -20.09 -0.10 -2.23 16 15 C -0.13 -4.58 9.63 22.54 0.22 -4.37 16 16 C -0.02 -0.53 9.53 22.23 0.21 -0.31 16 17 C -0.68 -17.22 5.88 22.33 0.13 -17.09 16 18 S 2.74 55.08 5.59 -56.49 -0.32 54.77 16 19 N -1.23 -12.33 9.40 37.02 0.35 -11.98 16 20 O -0.98 -24.33 15.34 -128.00 -1.96 -26.29 16 21 O -0.99 -25.84 16.95 -128.00 -2.17 -28.01 16 22 C 0.02 0.46 5.87 -19.90 -0.12 0.35 16 23 C -0.18 -3.20 9.40 71.24 0.67 -2.53 16 24 C -0.15 -4.92 7.07 22.54 0.16 -4.76 16 25 H 0.03 1.25 6.75 -2.39 -0.02 1.23 16 26 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.06 2.41 6.19 -2.39 -0.01 2.40 16 28 H 0.07 2.40 5.10 -2.39 -0.01 2.39 16 29 H 0.13 5.67 5.43 -2.39 -0.01 5.65 16 30 H 0.28 11.92 8.31 -92.71 -0.77 11.15 16 31 H 0.13 4.74 8.04 -2.91 -0.02 4.71 16 32 H 0.17 3.99 7.32 -2.91 -0.02 3.97 16 33 H 0.43 2.34 8.96 -96.75 -0.87 1.47 16 34 H 0.43 2.64 8.92 -96.75 -0.86 1.78 16 35 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 37 H 0.11 2.00 4.80 -2.39 -0.01 1.99 16 38 H 0.16 5.20 3.17 -2.91 -0.01 5.19 16 Total: -1.00 -75.12 317.25 -0.20 -75.33 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.58 Total: 21.34 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.03 Total: -25.65 kcal Atomic # 7 Polarization: -73.48 SS G_CDS: -1.17 Total: -74.65 kcal Atomic # 8 Polarization: -88.85 SS G_CDS: -4.20 Total: -93.05 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 16 Polarization: 55.08 SS G_CDS: -0.32 Total: 54.77 kcal Total: -75.12 -0.20 -75.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609910620.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -75.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds