Wall clock time and date at job start Fri Apr 10 2020 18:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99869 * 2 1 4 4 C 1.52996 * 109.46727 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47499 * 64.99939 * 4 3 2 6 6 C 1.46506 * 119.99933 * 262.47995 * 5 4 3 7 7 C 1.50700 * 109.46540 * 274.93888 * 6 5 4 8 8 H 1.07999 * 120.00700 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99698 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99936 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00040 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47035 * 89.99815 * 11 9 7 13 13 H 1.48495 * 109.47415 * 210.00029 * 11 9 7 14 14 H 1.48501 * 109.47469 * 330.00415 * 11 9 7 15 15 C 1.34771 * 120.00319 * 82.46806 * 5 4 3 16 16 O 1.21623 * 120.00289 * 182.34598 * 15 5 4 17 17 C 1.47177 * 119.99825 * 2.35286 * 15 5 4 18 18 C 1.36607 * 125.16120 * 172.31272 * 17 15 5 19 19 C 1.36798 * 114.74454 * 179.97438 * 18 17 15 20 20 C 1.36611 * 114.74790 * 0.02562 * 19 18 17 21 21 C 1.47168 * 125.16628 * 180.02562 * 20 19 18 22 22 N 1.34769 * 119.99960 * 179.97438 * 21 20 19 23 23 O 1.21627 * 119.99543 * 359.97438 * 21 20 19 24 24 S 1.75830 * 125.15901 * 352.26220 * 17 15 5 25 25 H 1.09004 * 109.47033 * 59.99960 * 1 2 3 26 26 H 1.08993 * 109.47715 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47329 * 300.00418 * 1 2 3 28 28 H 1.08991 * 109.47452 * 59.99626 * 3 2 1 29 29 H 1.08998 * 109.46825 * 299.99609 * 3 2 1 30 30 H 1.08999 * 109.47511 * 304.99837 * 4 3 2 31 31 H 1.09007 * 109.47343 * 184.99778 * 4 3 2 32 32 H 1.08996 * 109.47000 * 34.93645 * 6 5 4 33 33 H 1.08999 * 109.47115 * 154.94235 * 6 5 4 34 34 H 0.96998 * 119.99869 * 180.02562 * 10 9 7 35 35 H 1.08001 * 122.63281 * 0.22642 * 18 17 15 36 36 H 1.08007 * 122.62935 * 180.02562 * 19 18 17 37 37 H 0.96995 * 120.00717 * 359.97438 * 22 21 20 38 38 H 0.97003 * 119.99724 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2650 -0.8719 -1.2946 7 6 5.6828 -1.1133 -0.8448 8 1 6.3067 -0.2808 -0.5549 9 6 6.1834 -2.3974 -0.8023 10 7 7.4205 -2.6083 -0.4093 11 14 5.1037 -3.8377 -1.3016 12 1 5.2585 -4.0912 -2.7566 13 1 5.5100 -5.0475 -0.5424 14 1 3.6843 -3.5193 -1.0030 15 6 4.1173 1.3135 -2.3620 16 8 4.4423 0.7910 -3.4110 17 6 3.8776 2.7645 -2.3059 18 6 4.1307 3.6435 -3.3205 19 6 3.8266 4.9470 -3.0381 20 6 3.3198 5.1579 -1.7871 21 6 2.9162 6.4654 -1.2455 22 7 2.4267 6.5538 0.0071 23 8 3.0243 7.4661 -1.9283 24 16 3.2208 3.6296 -0.9231 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 3.5788 -1.4005 -0.6329 33 1 4.1401 -1.2366 -2.3141 34 1 7.7727 -3.5115 -0.3797 35 1 4.5352 3.3331 -4.2726 36 1 3.9756 5.7469 -3.7485 37 1 2.3401 5.7558 0.5515 38 1 2.1603 7.4156 0.3640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610491851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:18 Heat of formation + Delta-G solvation = -68.539183 kcal Electronic energy + Delta-G solvation = -23844.163578 eV Core-core repulsion = 20200.391157 eV Total energy + Delta-G solvation = -3643.772421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.74704 -39.55259 -37.90211 -36.96604 -35.20364 -34.02482 -32.75609 -30.59731 -29.72329 -27.91840 -26.30943 -25.58263 -23.11521 -22.72523 -21.84725 -20.10667 -19.26697 -17.93606 -17.43126 -17.05164 -16.98109 -16.23066 -15.95350 -15.64151 -15.27944 -15.16538 -14.98966 -14.64999 -14.24029 -13.95477 -13.50761 -13.30734 -12.90327 -12.70062 -12.46845 -12.23317 -12.13450 -11.95130 -11.63411 -11.18396 -11.12544 -10.84248 -10.51121 -10.36676 -10.17850 -10.08839 -9.72884 -9.63055 -9.42518 -8.92016 -8.61709 -8.59483 -7.91278 -6.11497 -4.11319 0.05650 1.23134 1.59977 2.06307 2.97347 3.16263 3.29248 3.35009 3.39576 3.43300 3.56884 3.73303 4.39028 4.56709 4.66759 4.96327 5.11221 5.14017 5.19187 5.23297 5.26461 5.29978 5.32200 5.34857 5.64068 5.83515 5.92154 5.96964 6.19233 6.39861 6.73948 6.91463 6.92489 7.12574 7.13503 7.56952 7.88242 7.97373 8.39498 8.64564 8.90258 9.48199 11.01465 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.004337 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.152955 B = 6454.020531 C = 7250.316537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.035 3.965 4 C 0.099 3.901 5 N -0.572 5.572 6 C 0.219 3.781 7 C -0.536 4.536 8 H 0.075 0.925 9 C 0.076 3.924 10 N -0.896 5.896 11 Si 0.873 3.127 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.262 1.262 15 C 0.573 3.427 16 O -0.519 6.519 17 C -0.202 4.202 18 C -0.083 4.083 19 C -0.058 4.058 20 C -0.288 4.288 21 C 0.598 3.402 22 N -0.851 5.851 23 O -0.534 6.534 24 S 0.200 5.800 25 H 0.038 0.962 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.265 0.735 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.400 0.600 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 13.919 4.194 20.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.291 6.291 3 C -0.044 4.044 4 C -0.028 4.028 5 N -0.302 5.302 6 C 0.099 3.901 7 C -0.574 4.574 8 H 0.093 0.907 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.700 3.300 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.186 1.186 15 C 0.358 3.642 16 O -0.397 6.397 17 C -0.324 4.324 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.408 4.408 21 C 0.383 3.617 22 N -0.415 5.415 23 O -0.412 6.412 24 S 0.468 5.532 25 H 0.057 0.943 26 H 0.104 0.896 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.134 0.866 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.228 0.772 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -14.591 13.430 4.563 20.349 hybrid contribution -0.221 -0.122 -1.057 1.087 sum -14.813 13.308 3.506 20.219 Atomic orbital electron populations 1.22741 0.81508 1.02800 0.99559 1.88051 1.19171 1.26674 1.95231 1.23390 0.94548 0.85787 1.00666 1.21906 0.91757 0.98583 0.90533 1.47744 1.63929 1.11224 1.07318 1.19813 0.97206 0.74387 0.98664 1.21320 0.96061 0.94520 1.45494 0.90690 1.24811 0.94887 0.98630 0.94389 1.69890 1.14626 1.21673 1.47217 0.86879 0.81565 0.82256 0.79300 1.19888 1.21060 1.18609 1.17064 0.78816 0.83561 0.84758 1.90804 1.47501 1.71935 1.29417 1.25306 1.09913 0.98819 0.98370 1.20576 0.99643 0.91051 1.00224 1.20524 0.96340 0.97116 0.95140 1.25404 1.14230 0.99622 1.01552 1.17125 0.76175 0.87012 0.81388 1.43669 1.68242 1.13925 1.15616 1.90845 1.54646 1.36854 1.58833 1.84474 1.59469 0.94392 1.14821 0.94313 0.89628 0.94248 0.91839 0.92759 0.86553 0.89663 0.93803 0.94070 0.92492 0.82246 0.83011 0.77192 0.76059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.37 -5.46 10.32 -35.23 -0.36 -5.82 16 3 C 0.03 0.42 4.80 37.16 0.18 0.60 16 4 C 0.10 1.48 5.36 -4.04 -0.02 1.46 16 5 N -0.57 -11.49 2.42 -176.42 -0.43 -11.91 16 6 C 0.22 5.27 4.27 -5.19 -0.02 5.25 16 7 C -0.54 -14.99 9.94 -34.44 -0.34 -15.33 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 10 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 11 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 15 C 0.57 11.56 7.58 -12.63 -0.10 11.47 16 16 O -0.52 -12.46 16.33 5.26 0.09 -12.37 16 17 C -0.20 -3.13 6.10 -36.54 -0.22 -3.35 16 18 C -0.08 -1.16 9.89 -40.69 -0.40 -1.56 16 19 C -0.06 -0.72 9.88 -40.69 -0.40 -1.13 16 20 C -0.29 -3.40 6.46 -36.55 -0.24 -3.64 16 21 C 0.60 6.91 8.07 -12.64 -0.10 6.80 16 22 N -0.85 -6.07 8.87 30.37 0.27 -5.80 16 23 O -0.53 -8.05 17.65 5.25 0.09 -7.96 16 24 S 0.20 2.17 14.68 -107.50 -1.58 0.59 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.65 6.26 -50.10 -0.31 0.33 16 30 H 0.12 1.81 8.02 -51.93 -0.42 1.40 16 31 H 0.09 1.10 4.42 -21.81 -0.10 1.00 16 32 H 0.04 1.03 6.84 -51.93 -0.36 0.68 16 33 H 0.04 1.07 6.68 -51.93 -0.35 0.72 16 34 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.16 2.16 8.05 -52.49 -0.42 1.73 16 36 H 0.15 1.70 8.04 -52.48 -0.42 1.28 16 37 H 0.40 1.98 7.93 -40.82 -0.32 1.66 16 38 H 0.41 2.18 8.93 -40.82 -0.36 1.82 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -36.52 335.38 -5.76 -42.27 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.34 Total: 1.60 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -0.65 Total: 4.07 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.62 Total: -44.09 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.19 Total: -26.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.58 Total: 0.59 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.52 -5.76 -42.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610491851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.265 kcal (2) G-P(sol) polarization free energy of solvation -36.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds