Wall clock time and date at job start Fri Apr 10 2020 18:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99869 * 2 1 4 4 C 1.52996 * 109.46727 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47499 * 64.99939 * 4 3 2 6 6 C 1.46506 * 119.99933 * 262.47995 * 5 4 3 7 7 C 1.50700 * 109.46540 * 274.93888 * 6 5 4 8 8 H 1.07999 * 120.00700 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99698 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99936 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00040 * 359.97438 * 9 7 6 12 12 H 1.48505 * 109.47035 * 89.99815 * 11 9 7 13 13 H 1.48495 * 109.47415 * 210.00029 * 11 9 7 14 14 H 1.48501 * 109.47469 * 330.00415 * 11 9 7 15 15 C 1.34771 * 120.00319 * 82.46806 * 5 4 3 16 16 O 1.21623 * 120.00289 * 182.34598 * 15 5 4 17 17 C 1.47177 * 119.99825 * 2.35286 * 15 5 4 18 18 C 1.36607 * 125.16120 * 172.31272 * 17 15 5 19 19 C 1.36798 * 114.74454 * 179.97438 * 18 17 15 20 20 C 1.36611 * 114.74790 * 0.02562 * 19 18 17 21 21 C 1.47168 * 125.16628 * 180.02562 * 20 19 18 22 22 N 1.34769 * 119.99960 * 179.97438 * 21 20 19 23 23 O 1.21627 * 119.99543 * 359.97438 * 21 20 19 24 24 S 1.75830 * 125.15901 * 352.26220 * 17 15 5 25 25 H 1.09004 * 109.47033 * 59.99960 * 1 2 3 26 26 H 1.08993 * 109.47715 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47329 * 300.00418 * 1 2 3 28 28 H 1.08991 * 109.47452 * 59.99626 * 3 2 1 29 29 H 1.08998 * 109.46825 * 299.99609 * 3 2 1 30 30 H 1.08999 * 109.47511 * 304.99837 * 4 3 2 31 31 H 1.09007 * 109.47343 * 184.99778 * 4 3 2 32 32 H 1.08996 * 109.47000 * 34.93645 * 6 5 4 33 33 H 1.08999 * 109.47115 * 154.94235 * 6 5 4 34 34 H 0.96998 * 119.99869 * 180.02562 * 10 9 7 35 35 H 1.08001 * 122.63281 * 0.22642 * 18 17 15 36 36 H 1.08007 * 122.62935 * 180.02562 * 19 18 17 37 37 H 0.96995 * 120.00717 * 359.97438 * 22 21 20 38 38 H 0.97003 * 119.99724 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5639 -1.2508 6 6 4.2650 -0.8719 -1.2946 7 6 5.6828 -1.1133 -0.8448 8 1 6.3067 -0.2808 -0.5549 9 6 6.1834 -2.3974 -0.8023 10 7 7.4205 -2.6083 -0.4093 11 14 5.1037 -3.8377 -1.3016 12 1 5.2585 -4.0912 -2.7566 13 1 5.5100 -5.0475 -0.5424 14 1 3.6843 -3.5193 -1.0030 15 6 4.1173 1.3135 -2.3620 16 8 4.4423 0.7910 -3.4110 17 6 3.8776 2.7645 -2.3059 18 6 4.1307 3.6435 -3.3205 19 6 3.8266 4.9470 -3.0381 20 6 3.3198 5.1579 -1.7871 21 6 2.9162 6.4654 -1.2455 22 7 2.4267 6.5538 0.0071 23 8 3.0243 7.4661 -1.9283 24 16 3.2208 3.6296 -0.9231 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8464 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1765 0.0902 32 1 3.5788 -1.4005 -0.6329 33 1 4.1401 -1.2366 -2.3141 34 1 7.7727 -3.5115 -0.3797 35 1 4.5352 3.3331 -4.2726 36 1 3.9756 5.7469 -3.7485 37 1 2.3401 5.7558 0.5515 38 1 2.1603 7.4156 0.3640 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610491851.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:17 Heat of formation + Delta-G solvation = -98.600101 kcal Electronic energy + Delta-G solvation = -23845.467117 eV Core-core repulsion = 20200.391157 eV Total energy + Delta-G solvation = -3645.075960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08505 -40.63056 -38.95077 -38.07650 -36.73595 -34.89658 -34.79089 -32.10722 -30.85183 -29.54217 -27.19531 -26.86639 -24.45019 -24.25049 -22.83147 -21.51047 -20.22865 -19.21153 -19.11486 -18.47775 -17.98855 -17.28745 -17.10859 -16.85969 -16.58622 -16.33324 -16.08163 -15.87561 -15.65216 -15.35904 -14.84522 -14.52504 -14.36860 -14.04524 -13.82439 -13.72957 -13.33365 -13.10536 -13.07557 -12.80483 -12.47764 -12.12321 -12.03368 -11.95018 -11.74318 -11.40077 -11.05304 -10.85880 -10.82064 -10.62263 -10.06214 -9.61339 -9.46175 -8.33800 -6.39035 -1.03539 0.18263 0.56483 0.97622 1.34748 1.37640 1.47508 1.91006 2.02007 2.17673 2.32161 2.37703 2.79930 3.00811 3.34816 3.85629 3.92352 4.02851 4.08164 4.17886 4.27545 4.38762 4.54728 4.61756 4.75033 4.79454 4.86498 4.90188 4.93115 5.02246 5.16002 5.39261 5.48140 5.76327 6.19503 6.21958 6.24645 6.46687 6.62093 7.05868 7.12709 7.26558 8.82540 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.017693 B = 0.004337 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.152955 B = 6454.020531 C = 7250.316537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.036 3.964 4 C 0.089 3.911 5 N -0.582 5.582 6 C 0.233 3.767 7 C -0.540 4.540 8 H 0.035 0.965 9 C 0.018 3.982 10 N -0.941 5.941 11 Si 0.941 3.059 12 H -0.277 1.277 13 H -0.273 1.273 14 H -0.240 1.240 15 C 0.567 3.433 16 O -0.575 6.575 17 C -0.253 4.253 18 C -0.072 4.072 19 C -0.071 4.071 20 C -0.281 4.281 21 C 0.597 3.403 22 N -0.825 5.825 23 O -0.571 6.571 24 S 0.294 5.706 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.112 0.888 29 H 0.058 0.942 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.020 0.980 34 H 0.269 0.731 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.414 0.586 38 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 15.254 5.986 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.042 4.042 4 C -0.036 4.036 5 N -0.311 5.311 6 C 0.112 3.888 7 C -0.578 4.578 8 H 0.054 0.946 9 C -0.180 4.180 10 N -0.581 5.581 11 Si 0.764 3.236 12 H -0.202 1.202 13 H -0.198 1.198 14 H -0.164 1.164 15 C 0.355 3.645 16 O -0.457 6.457 17 C -0.374 4.374 18 C -0.105 4.105 19 C -0.103 4.103 20 C -0.401 4.401 21 C 0.381 3.619 22 N -0.390 5.390 23 O -0.452 6.452 24 S 0.564 5.436 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.076 0.924 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.078 0.922 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.245 0.755 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -17.447 14.791 6.454 23.766 hybrid contribution 0.659 -0.391 -1.519 1.701 sum -16.788 14.400 4.935 22.661 Atomic orbital electron populations 1.22931 0.79441 1.03559 1.01173 1.87988 1.21541 1.27964 1.95593 1.23448 0.91898 0.85743 1.03068 1.22259 0.94410 0.99048 0.87874 1.47750 1.64062 1.09956 1.09289 1.19365 0.94843 0.77462 0.97165 1.21535 0.97674 0.93540 1.45062 0.94632 1.25725 0.96248 1.01771 0.94281 1.70027 1.16646 1.22636 1.48778 0.85815 0.80681 0.78578 0.78569 1.20223 1.19847 1.16354 1.17639 0.77535 0.85441 0.83871 1.90748 1.50026 1.73652 1.31296 1.24874 1.13934 0.96692 1.01947 1.20621 0.98556 0.91553 0.99778 1.20532 0.97270 0.96493 0.96038 1.25701 1.12377 1.00534 1.01494 1.17100 0.76318 0.86105 0.82340 1.43481 1.66070 1.15417 1.14043 1.90844 1.56432 1.37789 1.60130 1.83815 1.56851 0.91752 1.11164 0.93725 0.89508 0.91487 0.86984 0.92365 0.87365 0.87741 0.92726 0.96187 0.92190 0.82942 0.82016 0.75532 0.74535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -11.04 10.32 -148.98 -1.54 -12.57 16 3 C 0.04 0.77 4.80 71.98 0.35 1.11 16 4 C 0.09 2.53 5.36 86.38 0.46 3.00 16 5 N -0.58 -23.64 2.42 -830.33 -2.01 -25.66 16 6 C 0.23 11.47 4.27 85.63 0.37 11.83 16 7 C -0.54 -31.34 9.94 25.60 0.25 -31.09 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 9 C 0.02 1.08 5.47 84.66 0.46 1.54 16 10 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 11 Si 0.94 44.50 27.47 68.60 1.88 46.38 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.24 -10.44 6.54 99.48 0.65 -9.79 16 15 C 0.57 23.56 7.58 86.59 0.66 24.22 16 16 O -0.58 -29.16 16.33 -4.11 -0.07 -29.22 16 17 C -0.25 -7.73 6.10 24.24 0.15 -7.58 16 18 C -0.07 -1.99 9.89 21.55 0.21 -1.78 16 19 C -0.07 -1.66 9.88 21.55 0.21 -1.45 16 20 C -0.28 -5.85 6.46 24.24 0.16 -5.69 16 21 C 0.60 11.93 8.07 86.59 0.70 12.63 16 22 N -0.83 -8.35 8.87 -176.08 -1.56 -9.92 16 23 O -0.57 -15.99 17.65 -4.12 -0.07 -16.06 16 24 S 0.29 5.47 14.68 -56.49 -0.83 4.64 16 25 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.19 6.26 -3.55 -0.02 1.17 16 30 H 0.11 3.28 8.02 -2.39 -0.02 3.26 16 31 H 0.11 2.45 4.42 -21.54 -0.10 2.35 16 32 H 0.05 2.56 6.84 -2.39 -0.02 2.54 16 33 H 0.02 1.07 6.68 -2.39 -0.02 1.05 16 34 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 35 H 0.15 4.33 8.05 -2.91 -0.02 4.30 16 36 H 0.16 3.45 8.04 -2.91 -0.02 3.43 16 37 H 0.41 2.00 7.93 -92.71 -0.74 1.27 16 38 H 0.42 2.79 8.93 -92.71 -0.83 1.96 16 Total: -1.00 -84.37 335.38 0.74 -83.63 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -0.59 Total: 8.78 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.23 Total: 8.43 kcal Atomic # 7 Polarization: -90.73 SS G_CDS: -3.28 Total: -94.01 kcal Atomic # 8 Polarization: -56.18 SS G_CDS: -1.68 Total: -57.86 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.38 kcal Atomic # 16 Polarization: 5.47 SS G_CDS: -0.83 Total: 4.64 kcal Total: -84.37 0.74 -83.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610491851.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.972 kcal (2) G-P(sol) polarization free energy of solvation -84.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds