Wall clock time and date at job start Fri Apr 10 2020 18:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21284 * 120.00018 * 2 1 4 4 N 1.34774 * 120.00244 * 180.02562 * 2 1 3 5 5 C 1.46504 * 120.00094 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46995 * 180.02562 * 5 4 2 7 7 C 1.50703 * 109.47141 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00257 * 89.99840 * 7 6 5 9 9 C 1.38230 * 119.99864 * 179.97438 * 8 7 6 10 10 C 1.38235 * 120.00326 * 0.02562 * 9 8 7 11 11 S 1.76199 * 120.00342 * 179.70391 * 10 9 8 12 12 O 1.42099 * 106.40466 * 203.54194 * 11 10 9 13 13 O 1.42098 * 106.40181 * 336.46004 * 11 10 9 14 14 N 1.65602 * 107.21888 * 89.99875 * 11 10 9 15 15 C 1.36932 * 119.99861 * 65.00424 * 14 11 10 16 16 H 1.08001 * 120.00522 * 359.97438 * 15 14 11 17 17 C 1.38815 * 119.99948 * 179.97438 * 15 14 11 18 18 N 1.31617 * 119.99777 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00121 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47169 * 59.99770 * 19 17 15 21 21 H 1.48500 * 109.47337 * 180.02562 * 19 17 15 22 22 H 1.48510 * 109.46914 * 299.99919 * 19 17 15 23 23 C 1.38234 * 119.99814 * 359.97438 * 10 9 8 24 24 C 1.38234 * 119.99499 * 270.02358 * 7 6 5 25 25 H 1.09004 * 109.47395 * 239.99840 * 1 2 3 26 26 H 1.09004 * 109.47728 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47215 * 119.99805 * 1 2 3 28 28 H 0.97004 * 119.99966 * 359.97438 * 4 2 1 29 29 H 1.09001 * 109.47076 * 60.00173 * 5 4 2 30 30 H 1.08996 * 109.47068 * 300.00146 * 5 4 2 31 31 H 1.09001 * 109.47096 * 60.00149 * 6 5 4 32 32 H 1.09005 * 109.47051 * 299.99947 * 6 5 4 33 33 H 1.08002 * 119.99744 * 359.97438 * 8 7 6 34 34 H 1.08000 * 120.00356 * 179.97438 * 9 8 7 35 35 H 0.97000 * 119.99945 * 245.00458 * 14 11 10 36 36 H 0.97004 * 120.00002 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.00299 * 179.97438 * 23 10 9 38 38 H 1.07997 * 120.00459 * 359.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 6 4.1559 -2.6096 -0.0023 7 6 5.6629 -2.6096 -0.0022 8 6 6.3541 -2.6105 1.1949 9 6 7.7364 -2.6111 1.1949 10 6 8.4276 -2.6101 -0.0022 11 16 10.1896 -2.6029 -0.0023 12 8 10.5886 -2.0588 -1.2529 13 8 10.5886 -2.0549 1.2465 14 7 10.6863 -4.1827 0.0002 15 6 10.4135 -4.9878 -1.0733 16 1 9.8742 -4.5927 -1.9215 17 6 10.8303 -6.3119 -1.0715 18 7 11.4881 -6.7933 -0.0381 19 14 10.4577 -7.4105 -2.5356 20 1 11.0834 -6.8391 -3.7551 21 1 11.0051 -8.7684 -2.2877 22 1 8.9877 -7.4973 -2.7278 23 6 7.7364 -2.6092 -1.1994 24 6 6.3540 -2.6081 -1.1994 25 1 -0.3634 -0.5139 0.8900 26 1 -0.3635 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 1.6959 -2.0072 -0.0005 29 1 4.0096 -0.6535 0.8889 30 1 4.0089 -0.6531 -0.8911 31 1 3.7922 -3.1228 -0.8925 32 1 3.7929 -3.1240 0.8876 33 1 5.8141 -2.6108 2.1302 34 1 8.2765 -2.6114 2.1301 35 1 11.1704 -4.5377 0.7621 36 1 11.7790 -7.7187 -0.0366 37 1 8.2764 -2.6080 -2.1347 38 1 5.8141 -2.6074 -2.1347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610796641.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:22 Heat of formation + Delta-G solvation = -125.367468 kcal Electronic energy + Delta-G solvation = -22858.914480 eV Core-core repulsion = 19212.677800 eV Total energy + Delta-G solvation = -3646.236680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.75160 -40.18369 -38.07355 -36.72715 -36.56303 -36.42591 -33.92438 -32.80108 -31.98963 -31.15937 -28.94624 -26.40907 -24.82787 -23.82270 -22.38275 -21.56892 -20.30933 -19.99477 -18.86751 -18.15513 -17.79632 -17.20390 -17.06100 -16.56653 -16.26849 -16.16440 -15.91907 -15.42574 -15.19513 -14.85047 -14.66814 -14.39128 -14.02470 -13.80541 -13.45703 -13.11294 -13.04472 -13.02034 -13.00538 -12.94564 -12.86610 -12.83942 -12.52836 -12.35372 -12.08188 -11.96929 -11.83943 -11.49543 -11.00972 -10.19668 -10.15509 -10.03285 -9.95953 -8.28452 -5.86789 -0.32005 -0.06808 0.37494 1.48287 1.52758 1.58812 1.64487 2.19371 2.32115 2.51131 2.73126 2.99552 3.24180 3.58055 3.75266 3.83628 3.93736 4.00404 4.08197 4.15225 4.39510 4.51983 4.52984 4.58107 4.69507 4.79303 4.83747 5.00152 5.05609 5.10642 5.15272 5.20911 5.23456 5.42421 5.47381 5.64221 5.93738 6.58231 6.76707 6.99118 7.28138 7.35153 8.90112 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.018866 B = 0.003111 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.794418 B = 8998.898382 C = 9857.614655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.499 3.501 3 O -0.608 6.608 4 N -0.717 5.717 5 C 0.124 3.876 6 C -0.081 4.081 7 C -0.037 4.037 8 C -0.137 4.137 9 C -0.040 4.040 10 C -0.676 4.676 11 S 2.675 3.325 12 O -0.998 6.998 13 O -1.013 7.013 14 N -0.978 5.978 15 C -0.313 4.313 16 H 0.107 0.893 17 C -0.019 4.019 18 N -0.932 5.932 19 Si 0.981 3.019 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.037 4.037 24 C -0.138 4.138 25 H 0.114 0.886 26 H 0.083 0.917 27 H 0.113 0.887 28 H 0.421 0.579 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.159 0.841 34 H 0.136 0.864 35 H 0.406 0.594 36 H 0.271 0.729 37 H 0.133 0.867 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.884 3.631 0.053 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.288 3.712 3 O -0.490 6.490 4 N -0.370 5.370 5 C 0.000 4.000 6 C -0.118 4.118 7 C -0.038 4.038 8 C -0.156 4.156 9 C -0.060 4.060 10 C -0.764 4.764 11 S 2.768 3.232 12 O -0.989 6.989 13 O -1.003 7.003 14 N -0.731 5.731 15 C -0.447 4.447 16 H 0.124 0.876 17 C -0.220 4.220 18 N -0.575 5.575 19 Si 0.805 3.195 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.184 1.184 23 C -0.056 4.056 24 C -0.156 4.156 25 H 0.132 0.868 26 H 0.102 0.898 27 H 0.132 0.868 28 H 0.259 0.741 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.240 0.760 36 H 0.080 0.920 37 H 0.151 0.849 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.953 5.066 -0.037 23.506 hybrid contribution 0.096 -1.302 -0.091 1.309 sum -22.857 3.763 -0.128 23.165 Atomic orbital electron populations 1.21925 0.87833 1.05954 1.06660 1.21711 0.92497 0.82803 0.74160 1.90733 1.72427 1.33681 1.52144 1.45942 1.06754 1.09512 1.74798 1.21176 0.80398 0.96784 1.01637 1.20819 0.88799 0.95755 1.06440 1.20227 0.96654 0.94186 0.92722 1.21472 0.93192 1.01404 0.99494 1.21076 0.95965 0.92707 0.96234 1.31104 1.27589 1.17291 1.00428 1.02435 0.75445 0.73271 0.72005 1.93455 1.82177 1.78350 1.44912 1.93426 1.83404 1.78686 1.44759 1.51219 1.65391 1.29847 1.26658 1.19394 1.36407 0.93390 0.95464 0.87584 1.25979 0.97086 0.98281 1.00662 1.69794 1.39520 1.16415 1.31747 0.85164 0.79208 0.77102 0.78038 1.19438 1.20857 1.18437 1.21089 0.95932 0.92246 0.96340 1.21484 0.93209 1.01387 0.99542 0.86799 0.89765 0.86814 0.74061 0.92722 0.92789 0.87512 0.87437 0.82360 0.84651 0.75957 0.92004 0.84916 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 10.32 71.23 0.74 -0.33 16 2 C 0.50 8.31 7.94 87.66 0.70 9.01 16 3 O -0.61 -17.65 17.09 -3.04 -0.05 -17.70 16 4 N -0.72 -8.21 5.56 -463.07 -2.57 -10.78 16 5 C 0.12 2.00 5.66 86.38 0.49 2.49 16 6 C -0.08 -1.01 5.46 29.85 0.16 -0.85 16 7 C -0.04 -0.82 5.13 -19.87 -0.10 -0.92 16 8 C -0.14 -3.43 9.70 22.27 0.22 -3.22 16 9 C -0.04 -1.34 9.52 22.27 0.21 -1.12 16 10 C -0.68 -25.66 5.89 22.27 0.13 -25.53 16 11 S 2.68 120.23 5.70 -56.49 -0.32 119.91 16 12 O -1.00 -49.22 16.98 -128.00 -2.17 -51.39 16 13 O -1.01 -47.96 17.28 -128.00 -2.21 -50.17 16 14 N -0.98 -48.66 5.75 -54.27 -0.31 -48.98 16 15 C -0.31 -16.18 9.63 84.04 0.81 -15.37 16 16 H 0.11 5.16 7.82 -2.91 -0.02 5.13 16 17 C -0.02 -1.00 5.50 84.86 0.47 -0.53 16 18 N -0.93 -51.46 13.06 21.65 0.28 -51.17 16 19 Si 0.98 40.68 29.55 68.60 2.03 42.71 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 23 C -0.04 -1.25 9.52 22.27 0.21 -1.03 16 24 C -0.14 -3.53 9.70 22.27 0.22 -3.32 16 25 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 26 H 0.08 0.73 8.12 -2.39 -0.02 0.71 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.17 16 28 H 0.42 1.42 8.47 -92.71 -0.79 0.64 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 31 H 0.11 0.92 8.09 -2.39 -0.02 0.90 16 32 H 0.11 0.90 8.09 -2.38 -0.02 0.88 16 33 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.14 4.34 7.62 -2.91 -0.02 4.32 16 35 H 0.41 20.84 8.02 -96.74 -0.78 20.07 16 36 H 0.27 14.16 8.31 -92.71 -0.77 13.39 16 37 H 0.13 4.51 7.62 -2.91 -0.02 4.49 16 38 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -78.50 347.10 -1.55 -80.05 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: -0.46 Total: 28.25 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 4.24 Total: -40.71 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -2.60 Total: -110.93 kcal Atomic # 8 Polarization: -114.83 SS G_CDS: -4.44 Total: -119.27 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 120.23 SS G_CDS: -0.32 Total: 119.91 kcal Total: -78.50 -1.55 -80.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610796641.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.315 kcal (2) G-P(sol) polarization free energy of solvation -78.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds