Wall clock time and date at job start Fri Apr 10 2020 18:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39681 * 120.00018 * 2 1 4 4 C 1.38913 * 120.07057 * 334.99671 * 3 2 1 5 5 C 1.38106 * 119.92415 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.07208 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.92419 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.47064 * 89.99668 * 7 6 5 9 9 C 1.34771 * 119.99622 * 179.97438 * 8 7 6 10 10 O 1.21685 * 120.00526 * 0.02562 * 9 8 7 11 11 C 1.46381 * 119.99614 * 180.02562 * 9 8 7 12 12 H 1.07993 * 120.00106 * 0.02562 * 11 9 8 13 13 C 1.40051 * 119.99693 * 180.02562 * 11 9 8 14 14 N 1.30666 * 120.00364 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99754 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46882 * 0.02562 * 15 13 11 17 17 H 1.48495 * 109.47005 * 119.99582 * 15 13 11 18 18 H 1.48493 * 109.47394 * 240.00062 * 15 13 11 19 19 C 1.38286 * 120.15383 * 0.26802 * 6 5 4 20 20 C 1.38108 * 120.06868 * 359.45265 * 19 6 5 21 21 S 1.65598 * 120.00257 * 180.02562 * 2 1 3 22 22 C 1.81405 * 104.44913 * 269.99990 * 21 2 1 23 23 O 1.42094 * 104.27579 * 26.06902 * 21 2 1 24 24 O 1.42100 * 104.27943 * 153.92736 * 21 2 1 25 25 H 1.08996 * 109.46854 * 90.00511 * 1 2 3 26 26 H 1.09002 * 109.46912 * 210.00412 * 1 2 3 27 27 H 1.08997 * 109.47279 * 329.99931 * 1 2 3 28 28 H 1.07997 * 120.03863 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.96140 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47152 * 329.99751 * 7 6 5 31 31 H 1.09001 * 109.46980 * 209.99852 * 7 6 5 32 32 H 0.96996 * 119.99606 * 0.02562 * 8 7 6 33 33 H 0.97002 * 120.00059 * 179.97438 * 14 13 11 34 34 H 1.07999 * 119.96544 * 179.70952 * 19 6 5 35 35 H 1.08005 * 120.03586 * 180.27157 * 20 19 6 36 36 H 1.09002 * 109.47169 * 59.99398 * 22 21 2 37 37 H 1.08996 * 109.47363 * 180.02562 * 22 21 2 38 38 H 1.09003 * 109.46748 * 299.99858 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2097 0.0000 4 6 1.5679 2.3572 -0.5081 5 6 2.2614 3.5515 -0.5071 6 6 3.5473 3.6057 -0.0015 7 6 4.3013 4.9106 -0.0026 8 7 4.0409 5.6260 1.2491 9 6 4.6142 6.8252 1.4715 10 8 5.3477 7.3140 0.6326 11 6 4.3546 7.5398 2.7224 12 1 3.7039 7.1058 3.4671 13 6 4.9499 8.7862 2.9534 14 7 5.7376 9.3111 2.0525 15 14 4.6191 9.6978 4.5500 16 1 3.7015 8.8946 5.3975 17 1 5.8989 9.9119 5.2720 18 1 3.9943 11.0111 4.2499 19 6 4.1454 2.4639 0.4995 20 6 3.4554 1.2676 0.5068 21 16 2.2930 -1.4341 -0.0006 22 6 2.5194 -1.8269 1.7559 23 8 1.3970 -2.3558 -0.6062 24 8 3.5395 -1.1188 -0.6057 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 0.5637 2.3155 -0.9035 29 1 1.7991 4.4440 -0.9024 30 1 3.9721 5.5197 -0.8445 31 1 5.3694 4.7129 -0.0928 32 1 3.4565 5.2362 1.9179 33 1 6.1496 10.1746 2.2124 34 1 5.1516 2.5087 0.8893 35 1 3.9214 0.3771 0.9023 36 1 1.5452 -1.9196 2.2359 37 1 3.0627 -2.7669 1.8509 38 1 3.0867 -1.0296 2.2362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613950603.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:32 Heat of formation + Delta-G solvation = -71.848899 kcal Electronic energy + Delta-G solvation = -23095.058820 eV Core-core repulsion = 19451.142879 eV Total energy + Delta-G solvation = -3643.915941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85017 -37.62844 -37.40480 -36.42312 -36.15858 -33.27242 -32.28008 -31.12152 -30.08649 -29.93340 -27.34767 -26.25279 -24.45168 -22.68875 -21.36019 -19.64866 -19.50479 -18.21233 -17.51995 -17.13327 -16.92490 -15.71612 -15.53442 -15.25360 -14.94968 -14.58465 -14.35945 -14.01011 -13.88823 -13.71415 -13.50520 -13.42797 -13.17104 -12.92581 -12.70022 -12.49973 -12.36020 -12.31245 -12.00993 -11.52852 -11.43597 -11.23656 -11.04611 -10.95564 -10.79214 -10.48528 -10.40327 -10.18798 -8.92672 -8.85655 -8.18196 -7.54986 -7.49027 -6.17783 -4.63335 -0.27914 1.32512 1.42201 2.05501 3.13014 3.21143 3.25484 3.37160 3.64858 3.75332 4.10629 4.13175 4.36222 4.43156 4.59721 4.80570 4.84479 5.00123 5.04737 5.13235 5.22646 5.25004 5.34394 5.40292 5.50566 5.65617 5.78480 5.97230 6.16406 6.29118 6.38955 6.45752 6.49886 6.88250 7.02629 7.44109 7.94375 8.09783 8.34174 9.03210 9.55071 10.60727 10.79367 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.002593 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.716073 B =10795.025388 C =10934.751772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.942 5.942 3 C 0.161 3.839 4 C -0.147 4.147 5 C -0.074 4.074 6 C -0.106 4.106 7 C 0.171 3.829 8 N -0.763 5.763 9 C 0.554 3.446 10 O -0.581 6.581 11 C -0.544 4.544 12 H 0.068 0.932 13 C 0.087 3.913 14 N -0.768 5.768 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.067 4.067 20 C -0.159 4.159 21 S 2.602 3.398 22 C -0.673 4.673 23 O -0.949 6.949 24 O -0.936 6.936 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.381 0.619 33 H 0.268 0.732 34 H 0.131 0.869 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.148 -21.540 0.111 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.768 5.768 3 C 0.066 3.934 4 C -0.169 4.169 5 C -0.094 4.094 6 C -0.108 4.108 7 C 0.046 3.954 8 N -0.419 5.419 9 C 0.358 3.642 10 O -0.463 6.463 11 C -0.581 4.581 12 H 0.086 0.914 13 C -0.133 4.133 14 N -0.397 5.397 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C -0.087 4.087 20 C -0.180 4.180 21 S 2.696 3.304 22 C -0.823 4.823 23 O -0.940 6.940 24 O -0.926 6.926 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.144 0.856 29 H 0.147 0.853 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.212 0.788 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.265 -21.580 -1.343 23.935 hybrid contribution -0.600 0.290 1.815 1.933 sum -10.865 -21.290 0.471 23.907 Atomic orbital electron populations 1.21676 0.77107 1.03802 1.03398 1.55423 1.15720 1.19913 1.85752 1.17414 0.92095 0.85394 0.98544 1.20789 1.00976 0.91865 1.03256 1.21001 0.93722 0.97202 0.97448 1.20210 0.94994 0.95879 0.99694 1.19792 0.97790 0.87848 0.89951 1.46205 1.54636 1.22589 1.18440 1.18252 0.79465 0.78436 0.88038 1.90603 1.40403 1.67349 1.47988 1.20911 1.31088 1.03890 1.02256 0.91412 1.25712 0.93324 0.97096 0.97127 1.70030 1.22156 1.15110 1.32404 0.86325 0.78735 0.79536 0.82189 1.18813 1.20197 1.20189 1.20901 0.99775 0.91003 0.96976 1.20880 0.93792 0.99201 1.04153 1.05325 0.74233 0.72879 0.77923 1.30597 1.12158 1.12613 1.26981 1.93621 1.64897 1.61813 1.73654 1.93686 1.43195 1.82210 1.73539 0.91360 0.90391 0.89885 0.85615 0.85280 0.92465 0.92440 0.78798 0.92169 0.85101 0.86035 0.85153 0.84973 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 9.20 59.85 0.55 1.08 16 2 N -0.94 -8.43 3.32 -65.40 -0.22 -8.65 16 3 C 0.16 1.83 6.04 -83.79 -0.51 1.33 16 4 C -0.15 -1.68 9.13 -39.38 -0.36 -2.04 16 5 C -0.07 -0.98 9.69 -39.61 -0.38 -1.37 16 6 C -0.11 -1.60 5.25 -104.59 -0.55 -2.15 16 7 C 0.17 3.26 5.80 -5.19 -0.03 3.23 16 8 N -0.76 -16.83 5.54 -62.90 -0.35 -17.18 16 9 C 0.55 15.67 7.75 -12.99 -0.10 15.56 16 10 O -0.58 -18.79 15.02 5.20 0.08 -18.71 16 11 C -0.54 -15.27 9.54 -35.63 -0.34 -15.61 16 12 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 13 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 14 N -0.77 -23.01 11.83 55.55 0.66 -22.35 16 15 Si 0.91 19.98 29.56 -169.99 -5.02 14.95 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 C -0.07 -0.93 9.69 -39.61 -0.38 -1.31 16 20 C -0.16 -1.94 8.42 -39.38 -0.33 -2.27 16 21 S 2.60 22.82 5.38 -107.50 -0.58 22.24 16 22 C -0.67 -3.21 10.86 101.05 1.10 -2.11 16 23 O -0.95 -10.55 17.09 -57.54 -0.98 -11.53 16 24 O -0.94 -11.67 15.16 -57.54 -0.87 -12.54 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.33 7.79 -51.93 -0.40 -0.07 16 27 H 0.08 0.43 7.47 -51.93 -0.39 0.04 16 28 H 0.13 1.13 7.13 -52.49 -0.37 0.75 16 29 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.38 7.46 8.44 -40.82 -0.34 7.12 16 33 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.12 1.24 5.14 -52.48 -0.27 0.97 16 36 H 0.13 0.39 8.14 -51.92 -0.42 -0.03 16 37 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.13 0.58 7.18 -51.92 -0.37 0.21 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -38.91 337.10 -8.30 -47.21 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -4.65 Total: 4.80 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.43 Total: -3.33 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.09 Total: -48.18 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.78 Total: -42.77 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 22.82 SS G_CDS: -0.58 Total: 22.24 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -38.91 -8.30 -47.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613950603.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.639 kcal (2) G-P(sol) polarization free energy of solvation -38.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds