Wall clock time and date at job start Fri Apr 10 2020 18:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00408 * 2 1 4 4 N 1.34778 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99855 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47041 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47126 * 180.02562 * 6 5 4 8 8 S 1.65603 * 120.00246 * 163.29120 * 7 6 5 9 9 O 1.42097 * 106.39824 * 313.18952 * 8 7 6 10 10 O 1.42100 * 106.40125 * 180.26875 * 8 7 6 11 11 C 1.76205 * 107.21657 * 66.73028 * 8 7 6 12 12 C 1.37635 * 120.12894 * 111.50789 * 11 8 7 13 13 C 1.38611 * 120.24838 * 180.32216 * 12 11 8 14 14 C 1.38658 * 120.50172 * 359.66428 * 13 12 11 15 15 C 1.37602 * 120.24770 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12563 * 291.19399 * 11 8 7 17 17 C 1.41390 * 120.24390 * 359.97438 * 16 11 8 18 18 H 1.08005 * 120.00214 * 331.41272 * 17 16 11 19 19 C 1.39944 * 120.00308 * 151.41723 * 17 16 11 20 20 N 1.30825 * 119.99523 * 339.47366 * 19 17 16 21 21 Si 1.86796 * 120.00336 * 159.47273 * 19 17 16 22 22 H 1.48503 * 109.47190 * 269.99829 * 21 19 17 23 23 H 1.48498 * 109.47363 * 29.99816 * 21 19 17 24 24 H 1.48497 * 109.47295 * 150.00053 * 21 19 17 25 25 H 1.08994 * 109.47706 * 240.00288 * 1 2 3 26 26 H 1.09006 * 109.47141 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46721 * 120.00380 * 1 2 3 28 28 H 0.96997 * 120.00487 * 0.02562 * 4 2 1 29 29 H 1.09003 * 109.46967 * 60.00076 * 5 4 2 30 30 H 1.09001 * 109.47034 * 300.00391 * 5 4 2 31 31 H 1.09003 * 109.47042 * 60.00288 * 6 5 4 32 32 H 1.09001 * 109.47661 * 300.00172 * 6 5 4 33 33 H 0.97000 * 120.00093 * 343.29083 * 7 6 5 34 34 H 1.07996 * 119.87875 * 0.02562 * 12 11 8 35 35 H 1.08000 * 119.75116 * 179.69439 * 13 12 11 36 36 H 1.08002 * 119.87848 * 180.02562 * 14 13 12 37 37 H 1.07995 * 120.12735 * 180.02562 * 15 14 13 38 38 H 0.97004 * 120.00400 * 355.44661 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1558 -2.6097 0.0023 7 7 5.6208 -2.6097 0.0034 8 16 6.4485 -3.9831 0.4171 9 8 5.8401 -4.4763 1.6028 10 8 7.8297 -3.6613 0.3282 11 6 6.1344 -5.1794 -0.8379 12 6 7.1453 -5.5743 -1.6844 13 6 6.8994 -6.5102 -2.6768 14 6 5.6368 -7.0641 -2.8246 15 6 4.6127 -6.6887 -1.9856 16 6 4.8509 -5.7393 -0.9745 17 6 3.8065 -5.3465 -0.1061 18 1 4.0338 -5.0125 0.8955 19 6 2.4781 -5.3906 -0.5443 20 7 2.2119 -5.3974 -1.8252 21 14 1.0853 -5.4399 0.6994 22 1 0.7635 -6.8522 1.0266 23 1 1.4995 -4.7277 1.9349 24 1 -0.1143 -4.7790 0.1257 25 1 -0.3634 -0.5137 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6959 -2.0073 0.0005 29 1 4.0088 -0.6532 0.8911 30 1 4.0095 -0.6536 -0.8888 31 1 3.7928 -3.1241 -0.8876 32 1 3.7921 -3.1230 0.8924 33 1 6.1060 -1.8053 -0.2381 34 1 8.1327 -5.1500 -1.5780 35 1 7.6973 -6.8107 -3.3397 36 1 5.4565 -7.7928 -3.6011 37 1 3.6302 -7.1216 -2.1022 38 1 2.9303 -5.3053 -2.4705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:00 Heat of formation + Delta-G solvation = -106.766553 kcal Electronic energy + Delta-G solvation = -24591.892992 eV Core-core repulsion = 20946.462908 eV Total energy + Delta-G solvation = -3645.430084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.47414 -38.03681 -36.57163 -35.91546 -35.01812 -34.26865 -33.58969 -30.35477 -30.28754 -29.54837 -27.35333 -25.57785 -22.49099 -21.85471 -21.30789 -20.57124 -18.85567 -18.31148 -17.24146 -16.86010 -16.22338 -15.77589 -15.55329 -15.28357 -14.98463 -14.64854 -14.32671 -14.13504 -13.81356 -13.40777 -13.30641 -12.79472 -12.59638 -12.50096 -12.25519 -11.99256 -11.67702 -11.58394 -11.37763 -11.32542 -11.24387 -11.10382 -10.98807 -10.62680 -10.60282 -9.92926 -9.87662 -9.47933 -9.45296 -9.04360 -8.80420 -8.34393 -7.92159 -7.58011 -4.99079 1.36424 2.11037 2.51932 2.69269 2.92623 3.01144 3.13008 3.25709 3.67729 3.94862 4.19747 4.54999 4.83440 5.02814 5.05367 5.25131 5.30037 5.35301 5.44094 5.70014 5.80204 5.83445 5.95816 6.01961 6.19410 6.28009 6.35421 6.52479 6.60386 6.77769 7.03734 7.17702 7.26201 7.43379 7.50701 7.56180 7.57153 7.68814 7.85469 8.26393 8.26845 8.45208 9.63303 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.006244 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.242985 B = 4483.576323 C = 5666.704537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.554 6.554 4 N -0.725 5.725 5 C 0.108 3.892 6 C 0.114 3.886 7 N -1.118 6.118 8 S 2.710 3.290 9 O -0.971 6.971 10 O -0.995 6.995 11 C -0.780 4.780 12 C 0.013 3.987 13 C -0.259 4.259 14 C -0.055 4.055 15 C -0.212 4.212 16 C 0.168 3.832 17 C -0.531 4.531 18 H 0.121 0.879 19 C 0.040 3.960 20 N -0.779 5.779 21 Si 1.050 2.950 22 H -0.268 1.268 23 H -0.264 1.264 24 H -0.269 1.269 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.406 0.594 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.408 0.592 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 4.237 0.850 6.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.298 3.702 3 O -0.432 6.432 4 N -0.377 5.377 5 C -0.018 4.018 6 C -0.013 4.013 7 N -0.875 5.875 8 S 2.807 3.193 9 O -0.961 6.961 10 O -0.986 6.986 11 C -0.875 4.875 12 C -0.007 4.007 13 C -0.279 4.279 14 C -0.074 4.074 15 C -0.232 4.232 16 C 0.163 3.837 17 C -0.558 4.558 18 H 0.138 0.862 19 C -0.185 4.185 20 N -0.402 5.402 21 Si 0.871 3.129 22 H -0.193 1.193 23 H -0.188 1.188 24 H -0.194 1.194 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.108 0.892 28 H 0.241 0.759 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.241 0.759 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.131 0.869 38 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.498 4.664 1.763 7.423 hybrid contribution 1.423 -0.587 -1.238 1.975 sum -4.075 4.077 0.525 5.788 Atomic orbital electron populations 1.21929 0.91694 1.05312 1.04603 1.20786 0.90636 0.83313 0.75500 1.90702 1.70989 1.31458 1.50094 1.45938 1.07424 1.09162 1.75220 1.21607 0.79834 0.97720 1.02592 1.21782 0.79469 0.95092 1.04961 1.55441 1.14779 1.29152 1.88131 1.00800 0.71374 0.72695 0.74459 1.93474 1.77289 1.79605 1.45733 1.93465 1.32423 1.84508 1.88190 1.29801 1.03725 1.26885 1.27069 1.20330 0.96167 0.93024 0.91181 1.20503 0.96973 1.06604 1.03865 1.20875 0.93422 0.96551 0.96554 1.21395 0.98930 1.02019 1.00835 1.17062 0.89805 0.87179 0.89655 1.21664 0.92769 1.38633 1.02783 0.86164 1.27118 1.01015 0.91347 0.98971 1.70465 1.40254 1.26708 1.02726 0.83845 0.74359 0.79739 0.74909 1.19283 1.18806 1.19401 0.89268 0.89102 0.89164 0.75923 0.91087 0.91205 0.89437 0.89065 0.75938 0.87147 0.88381 0.88525 0.86929 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 10.32 36.00 0.37 -1.24 16 2 C 0.51 6.99 7.94 -10.99 -0.09 6.91 16 3 O -0.55 -9.76 17.09 5.56 0.09 -9.66 16 4 N -0.72 -9.74 5.56 -60.29 -0.33 -10.07 16 5 C 0.11 1.56 5.82 -4.04 -0.02 1.54 16 6 C 0.11 1.87 4.55 -4.05 -0.02 1.85 16 7 N -1.12 -18.84 5.99 -10.62 -0.06 -18.90 16 8 S 2.71 55.82 5.44 -107.50 -0.58 55.24 16 9 O -0.97 -22.27 14.86 -57.17 -0.85 -23.12 16 10 O -1.00 -21.71 16.97 -57.17 -0.97 -22.68 16 11 C -0.78 -17.48 5.97 -38.87 -0.23 -17.71 16 12 C 0.01 0.28 9.53 -39.66 -0.38 -0.10 16 13 C -0.26 -5.35 10.05 -39.29 -0.39 -5.75 16 14 C -0.06 -1.15 10.02 -39.66 -0.40 -1.55 16 15 C -0.21 -4.81 7.82 -38.87 -0.30 -5.11 16 16 C 0.17 3.90 5.27 -106.83 -0.56 3.34 16 17 C -0.53 -11.82 4.81 -37.74 -0.18 -12.00 16 18 H 0.12 2.74 4.09 -52.48 -0.21 2.52 16 19 C 0.04 0.82 4.55 -17.34 -0.08 0.74 16 20 N -0.78 -16.77 12.41 55.55 0.69 -16.08 16 21 Si 1.05 17.70 29.98 -169.99 -5.10 12.61 16 22 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 23 H -0.26 -4.22 7.11 56.52 0.40 -3.81 16 24 H -0.27 -4.19 7.11 56.52 0.40 -3.79 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.41 4.93 8.47 -40.82 -0.35 4.58 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.57 6.40 -51.93 -0.33 1.23 16 32 H 0.09 1.58 6.09 -51.93 -0.32 1.26 16 33 H 0.41 5.75 8.67 -34.47 -0.30 5.45 16 34 H 0.11 2.20 7.33 -52.49 -0.38 1.82 16 35 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.11 2.56 6.50 -52.49 -0.34 2.22 16 38 H 0.30 6.81 6.31 -40.82 -0.26 6.55 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -29.55 326.95 -8.72 -38.27 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: -4.25 Total: 18.55 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -2.29 Total: -29.08 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.29 Total: -45.06 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -1.73 Total: -55.45 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.10 Total: 12.61 kcal Atomic # 16 Polarization: 55.82 SS G_CDS: -0.58 Total: 55.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.55 -8.72 -38.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.496 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds