Wall clock time and date at job start Fri Apr 10 2020 18:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21279 * 120.00408 * 2 1 4 4 N 1.34778 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99855 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47041 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47126 * 180.02562 * 6 5 4 8 8 S 1.65603 * 120.00246 * 163.29120 * 7 6 5 9 9 O 1.42097 * 106.39824 * 313.18952 * 8 7 6 10 10 O 1.42100 * 106.40125 * 180.26875 * 8 7 6 11 11 C 1.76205 * 107.21657 * 66.73028 * 8 7 6 12 12 C 1.37635 * 120.12894 * 111.50789 * 11 8 7 13 13 C 1.38611 * 120.24838 * 180.32216 * 12 11 8 14 14 C 1.38658 * 120.50172 * 359.66428 * 13 12 11 15 15 C 1.37602 * 120.24770 * 0.02562 * 14 13 12 16 16 C 1.40703 * 120.12563 * 291.19399 * 11 8 7 17 17 C 1.41390 * 120.24390 * 359.97438 * 16 11 8 18 18 H 1.08005 * 120.00214 * 331.41272 * 17 16 11 19 19 C 1.39944 * 120.00308 * 151.41723 * 17 16 11 20 20 N 1.30825 * 119.99523 * 339.47366 * 19 17 16 21 21 Si 1.86796 * 120.00336 * 159.47273 * 19 17 16 22 22 H 1.48503 * 109.47190 * 269.99829 * 21 19 17 23 23 H 1.48498 * 109.47363 * 29.99816 * 21 19 17 24 24 H 1.48497 * 109.47295 * 150.00053 * 21 19 17 25 25 H 1.08994 * 109.47706 * 240.00288 * 1 2 3 26 26 H 1.09006 * 109.47141 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46721 * 120.00380 * 1 2 3 28 28 H 0.96997 * 120.00487 * 0.02562 * 4 2 1 29 29 H 1.09003 * 109.46967 * 60.00076 * 5 4 2 30 30 H 1.09001 * 109.47034 * 300.00391 * 5 4 2 31 31 H 1.09003 * 109.47042 * 60.00288 * 6 5 4 32 32 H 1.09001 * 109.47661 * 300.00172 * 6 5 4 33 33 H 0.97000 * 120.00093 * 343.29083 * 7 6 5 34 34 H 1.07996 * 119.87875 * 0.02562 * 12 11 8 35 35 H 1.08000 * 119.75116 * 179.69439 * 13 12 11 36 36 H 1.08002 * 119.87848 * 180.02562 * 14 13 12 37 37 H 1.07995 * 120.12735 * 180.02562 * 15 14 13 38 38 H 0.97004 * 120.00400 * 355.44661 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1558 -2.6097 0.0023 7 7 5.6208 -2.6097 0.0034 8 16 6.4485 -3.9831 0.4171 9 8 5.8401 -4.4763 1.6028 10 8 7.8297 -3.6613 0.3282 11 6 6.1344 -5.1794 -0.8379 12 6 7.1453 -5.5743 -1.6844 13 6 6.8994 -6.5102 -2.6768 14 6 5.6368 -7.0641 -2.8246 15 6 4.6127 -6.6887 -1.9856 16 6 4.8509 -5.7393 -0.9745 17 6 3.8065 -5.3465 -0.1061 18 1 4.0338 -5.0125 0.8955 19 6 2.4781 -5.3906 -0.5443 20 7 2.2119 -5.3974 -1.8252 21 14 1.0853 -5.4399 0.6994 22 1 0.7635 -6.8522 1.0266 23 1 1.4995 -4.7277 1.9349 24 1 -0.1143 -4.7790 0.1257 25 1 -0.3634 -0.5137 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 1.6959 -2.0073 0.0005 29 1 4.0088 -0.6532 0.8911 30 1 4.0095 -0.6536 -0.8888 31 1 3.7928 -3.1241 -0.8876 32 1 3.7921 -3.1230 0.8924 33 1 6.1060 -1.8053 -0.2381 34 1 8.1327 -5.1500 -1.5780 35 1 7.6973 -6.8107 -3.3397 36 1 5.4565 -7.7928 -3.6011 37 1 3.6302 -7.1216 -2.1022 38 1 2.9303 -5.3053 -2.4705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572235.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:59 Heat of formation + Delta-G solvation = -129.015410 kcal Electronic energy + Delta-G solvation = -24592.857775 eV Core-core repulsion = 20946.462908 eV Total energy + Delta-G solvation = -3646.394867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59894 -39.68999 -38.24664 -37.29790 -36.75646 -35.86333 -34.87641 -32.00457 -31.27675 -31.19060 -28.52397 -27.21963 -23.89503 -23.40115 -22.96210 -21.67038 -20.45813 -19.92448 -18.77663 -18.10131 -17.74978 -17.06720 -16.75830 -16.68077 -16.60902 -16.17631 -15.66802 -15.43905 -15.42571 -14.95104 -14.51515 -14.40833 -14.02749 -13.51222 -13.36293 -13.33933 -13.16765 -13.06343 -13.02248 -12.83725 -12.78980 -12.73150 -12.38369 -12.20430 -11.86617 -11.56359 -11.09935 -11.01820 -11.00024 -10.36832 -10.12215 -10.02340 -9.61713 -9.24407 -6.68808 -0.26387 0.42264 0.87205 1.56038 1.63397 1.64673 1.85480 2.05533 2.27707 2.53636 2.61719 2.89811 3.36788 3.63399 3.78044 4.01622 4.11899 4.22569 4.33015 4.47585 4.59244 4.61270 4.63343 4.71084 4.82200 4.94529 5.03590 5.11514 5.17338 5.36160 5.40701 5.50520 5.59601 5.77801 5.86783 6.00592 6.15097 6.19686 6.52836 6.59258 6.77954 7.21843 7.95455 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.006244 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.242985 B = 4483.576323 C = 5666.704537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.599 6.599 4 N -0.722 5.722 5 C 0.114 3.886 6 C 0.120 3.880 7 N -1.106 6.106 8 S 2.729 3.271 9 O -0.996 6.996 10 O -1.008 7.008 11 C -0.800 4.800 12 C -0.002 4.002 13 C -0.263 4.263 14 C -0.056 4.056 15 C -0.234 4.234 16 C 0.145 3.855 17 C -0.541 4.541 18 H 0.112 0.888 19 C 0.021 3.979 20 N -0.785 5.785 21 Si 1.080 2.920 22 H -0.274 1.274 23 H -0.251 1.251 24 H -0.242 1.242 25 H 0.113 0.887 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.413 0.587 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.422 0.578 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.888 4.493 0.754 7.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.295 3.705 3 O -0.480 6.480 4 N -0.375 5.375 5 C -0.012 4.012 6 C -0.007 4.007 7 N -0.867 5.867 8 S 2.825 3.175 9 O -0.986 6.986 10 O -0.999 6.999 11 C -0.894 4.894 12 C -0.022 4.022 13 C -0.283 4.283 14 C -0.075 4.075 15 C -0.254 4.254 16 C 0.140 3.860 17 C -0.568 4.568 18 H 0.130 0.870 19 C -0.200 4.200 20 N -0.406 5.406 21 Si 0.896 3.104 22 H -0.200 1.200 23 H -0.175 1.175 24 H -0.165 1.165 25 H 0.131 0.869 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.250 0.750 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.258 0.742 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.693 4.907 1.642 8.460 hybrid contribution 1.864 -0.697 -1.256 2.353 sum -4.829 4.210 0.386 6.418 Atomic orbital electron populations 1.21970 0.87834 1.06372 1.06575 1.21628 0.92432 0.82358 0.74065 1.90683 1.72253 1.32898 1.52211 1.45968 1.06879 1.09773 1.74883 1.21449 0.80899 0.96039 1.02776 1.21675 0.78851 0.96267 1.03910 1.55072 1.15106 1.28665 1.87812 1.00103 0.70920 0.72765 0.73725 1.93437 1.77721 1.80429 1.47005 1.93436 1.33419 1.84759 1.88278 1.30077 1.03859 1.27855 1.27648 1.20638 0.96600 0.93486 0.91488 1.20880 0.97697 1.05847 1.03848 1.21213 0.93069 0.96608 0.96561 1.21446 0.99228 1.02796 1.01920 1.17353 0.90527 0.87788 0.90354 1.21710 0.93560 1.39254 1.02278 0.86993 1.28148 1.02312 0.89970 0.99583 1.70547 1.39594 1.27490 1.03018 0.83522 0.73281 0.79797 0.73818 1.19953 1.17490 1.16541 0.86869 0.88598 0.87361 0.75027 0.90840 0.91138 0.90817 0.89790 0.74236 0.85962 0.85488 0.85740 0.87771 0.89412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.32 71.23 0.74 -1.87 16 2 C 0.51 13.03 7.94 87.66 0.70 13.73 16 3 O -0.60 -20.67 17.09 -3.03 -0.05 -20.72 16 4 N -0.72 -18.33 5.56 -463.06 -2.57 -20.90 16 5 C 0.11 3.22 5.82 86.38 0.50 3.72 16 6 C 0.12 3.90 4.55 86.38 0.39 4.29 16 7 N -1.11 -36.96 5.99 -187.50 -1.12 -38.08 16 8 S 2.73 112.57 5.44 -56.49 -0.31 112.27 16 9 O -1.00 -46.02 14.86 -128.00 -1.90 -47.92 16 10 O -1.01 -43.66 16.97 -128.00 -2.17 -45.83 16 11 C -0.80 -36.02 5.97 22.73 0.14 -35.88 16 12 C 0.00 -0.10 9.53 22.22 0.21 0.11 16 13 C -0.26 -10.48 10.05 22.46 0.23 -10.25 16 14 C -0.06 -2.28 10.02 22.22 0.22 -2.05 16 15 C -0.23 -10.66 7.82 22.73 0.18 -10.49 16 16 C 0.14 6.79 5.27 -21.29 -0.11 6.67 16 17 C -0.54 -24.20 4.81 23.46 0.11 -24.09 16 18 H 0.11 5.15 4.09 -2.91 -0.01 5.14 16 19 C 0.02 0.85 4.55 85.26 0.39 1.24 16 20 N -0.79 -33.54 12.41 21.83 0.27 -33.27 16 21 Si 1.08 33.93 29.98 68.60 2.06 35.98 16 22 H -0.27 -8.93 7.11 99.48 0.71 -8.22 16 23 H -0.25 -7.35 7.11 99.48 0.71 -6.65 16 24 H -0.24 -6.56 7.11 99.48 0.71 -5.86 16 25 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.10 1.42 8.12 -2.38 -0.02 1.40 16 27 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.41 9.24 8.47 -92.71 -0.79 8.45 16 29 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.07 2.64 6.40 -2.39 -0.02 2.63 16 32 H 0.08 2.88 6.09 -2.39 -0.01 2.87 16 33 H 0.42 11.62 8.67 -96.75 -0.84 10.78 16 34 H 0.12 4.79 7.33 -2.91 -0.02 4.77 16 35 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 36 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 37 H 0.10 4.81 6.50 -2.91 -0.02 4.79 16 38 H 0.29 13.22 6.31 -92.71 -0.58 12.63 16 Total: -1.00 -63.19 326.95 -2.43 -65.62 By element: Atomic # 1 Polarization: 48.02 SS G_CDS: -0.31 Total: 47.71 kcal Atomic # 6 Polarization: -58.54 SS G_CDS: 3.69 Total: -54.85 kcal Atomic # 7 Polarization: -88.83 SS G_CDS: -3.43 Total: -92.25 kcal Atomic # 8 Polarization: -110.34 SS G_CDS: -4.13 Total: -114.47 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.06 Total: 35.98 kcal Atomic # 16 Polarization: 112.57 SS G_CDS: -0.31 Total: 112.27 kcal Total: -63.19 -2.43 -65.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572235.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.396 kcal (2) G-P(sol) polarization free energy of solvation -63.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds