Wall clock time and date at job start Fri Apr 10 2020 18:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36931 * 119.99754 * 2 1 4 4 H 1.07999 * 120.00114 * 203.71793 * 3 2 1 5 5 C 1.38818 * 120.00023 * 23.72258 * 3 2 1 6 6 N 1.31619 * 119.99673 * 14.28097 * 5 3 2 7 7 Si 1.86800 * 119.99867 * 194.27509 * 5 3 2 8 8 H 1.48494 * 109.47285 * 90.00460 * 7 5 3 9 9 H 1.48502 * 109.47041 * 210.00505 * 7 5 3 10 10 H 1.48497 * 109.47271 * 330.00115 * 7 5 3 11 11 C 1.46499 * 119.99792 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47301 * 90.00184 * 11 2 1 13 13 O 1.21290 * 119.99827 * 359.97438 * 12 11 2 14 14 N 1.34772 * 119.99803 * 179.97438 * 12 11 2 15 15 C 1.39932 * 120.00009 * 174.78103 * 14 12 11 16 16 C 1.38897 * 120.06867 * 327.15342 * 15 14 12 17 17 C 1.38093 * 119.92710 * 179.72045 * 16 15 14 18 18 C 1.38303 * 120.06955 * 0.57145 * 17 16 15 19 19 C 1.38254 * 120.13981 * 359.67856 * 18 17 16 20 20 S 1.76204 * 119.96344 * 180.02562 * 19 18 17 21 21 C 1.81403 * 104.44682 * 270.02031 * 20 19 18 22 22 O 1.42103 * 104.27773 * 26.08795 * 20 19 18 23 23 O 1.42101 * 104.27913 * 153.95034 * 20 19 18 24 24 C 1.38135 * 120.07653 * 0.04448 * 19 18 17 25 25 H 1.09002 * 109.47061 * 273.18651 * 1 2 3 26 26 H 1.08992 * 109.47240 * 33.19224 * 1 2 3 27 27 H 1.09007 * 109.46758 * 153.18840 * 1 2 3 28 28 H 0.97011 * 119.99197 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46865 * 210.00214 * 11 2 1 30 30 H 1.09002 * 109.47224 * 329.99355 * 11 2 1 31 31 H 0.96997 * 120.00579 * 354.78104 * 14 12 11 32 32 H 1.08001 * 120.03183 * 359.96954 * 16 15 14 33 33 H 1.08000 * 119.96004 * 180.25295 * 17 16 15 34 34 H 1.07995 * 119.92983 * 179.70363 * 18 17 16 35 35 H 1.09002 * 109.47356 * 60.00156 * 21 20 19 36 36 H 1.09000 * 109.46906 * 179.97438 * 21 20 19 37 37 H 1.08997 * 109.47229 * 299.99670 * 21 20 19 38 38 H 1.07995 * 120.03626 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1613 1.2254 -0.3762 5 6 1.5435 2.3373 0.4837 6 7 0.4379 2.2508 1.1926 7 14 2.2971 4.0092 0.1285 8 1 1.7376 4.5453 -1.1383 9 1 1.9827 4.9404 1.2417 10 1 3.7700 3.8711 -0.0002 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4215 13 8 2.0543 -1.0204 -2.3431 14 7 3.1117 -2.8503 -1.6682 15 6 3.2500 -3.3097 -2.9827 16 6 2.2460 -3.0712 -3.9125 17 6 2.3881 -3.5209 -5.2105 18 6 3.5233 -4.2182 -5.5819 19 6 4.5220 -4.4617 -4.6574 20 16 5.9666 -5.3500 -5.1359 21 6 5.5568 -7.0875 -4.8136 22 8 6.0762 -5.1144 -6.5329 23 8 6.9695 -4.8990 -4.2359 24 6 4.3886 -4.0097 -3.3590 25 1 -0.3633 0.0571 1.0261 26 1 -0.3633 0.8599 -0.5625 27 1 -0.3633 -0.9173 -0.4636 28 1 0.0146 3.0554 1.5308 29 1 3.1499 -1.1386 0.5134 30 1 1.6085 -2.0286 0.5130 31 1 3.4930 -3.3576 -0.9347 32 1 1.3571 -2.5313 -3.6217 33 1 1.6097 -3.3322 -5.9349 34 1 3.6299 -4.5730 -6.5963 35 1 4.6885 -7.3724 -5.4078 36 1 6.4044 -7.7170 -5.0847 37 1 5.3313 -7.2173 -3.7551 38 1 5.1693 -4.1998 -2.6375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727830013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:11 Heat of formation + Delta-G solvation = -38.699755 kcal Electronic energy + Delta-G solvation = -23228.370895 eV Core-core repulsion = 19585.892408 eV Total energy + Delta-G solvation = -3642.478486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.28838 -38.35167 -37.32880 -36.16424 -35.33969 -34.41052 -31.50108 -31.33919 -29.97535 -29.77549 -27.13081 -25.84228 -23.67276 -22.91667 -21.62337 -20.16632 -19.07310 -18.21822 -17.06138 -16.66727 -16.49607 -16.32912 -16.01077 -15.75937 -15.10217 -14.81953 -14.30395 -14.04904 -13.71172 -13.62275 -13.56428 -13.39728 -13.08396 -12.87678 -12.36695 -12.30529 -12.24495 -11.85171 -11.81362 -11.43824 -11.32142 -10.96063 -10.88746 -10.75995 -10.50442 -10.32818 -10.02926 -9.95930 -9.53356 -9.25670 -8.57634 -8.15165 -6.86671 -5.80377 -3.26676 -0.21073 0.75229 1.15522 2.61019 3.02011 3.24477 3.40038 3.45282 3.46620 3.47974 3.77037 3.86826 4.39855 4.47207 4.53786 4.71221 4.89095 5.06902 5.19343 5.24306 5.30729 5.41052 5.43660 5.58670 5.69545 5.84724 5.99652 6.13085 6.21078 6.25478 6.42844 6.67104 6.95114 7.30969 7.60009 7.65462 7.77700 8.29208 8.64235 9.14009 9.74813 10.21572 11.25342 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.002873 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.841420 B = 9744.583362 C = 9988.486451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.572 5.572 3 C -0.258 4.258 4 H 0.067 0.933 5 C 0.008 3.992 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.278 1.278 11 C 0.137 3.863 12 C 0.473 3.527 13 O -0.501 6.501 14 N -0.689 5.689 15 C 0.147 3.853 16 C -0.071 4.071 17 C -0.119 4.119 18 C -0.053 4.053 19 C -0.640 4.640 20 S 2.503 3.497 21 C -0.650 4.650 22 O -0.939 6.939 23 O -0.938 6.938 24 C -0.065 4.065 25 H 0.035 0.965 26 H 0.045 0.955 27 H -0.003 1.003 28 H 0.254 0.746 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.408 0.592 32 H 0.144 0.856 33 H 0.133 0.867 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -21.875 -9.212 24.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.291 5.291 3 C -0.387 4.387 4 H 0.085 0.915 5 C -0.191 4.191 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.003 3.997 12 C 0.259 3.741 13 O -0.372 6.372 14 N -0.337 5.337 15 C 0.050 3.950 16 C -0.092 4.092 17 C -0.138 4.138 18 C -0.073 4.073 19 C -0.728 4.728 20 S 2.683 3.317 21 C -0.800 4.800 22 O -0.937 6.937 23 O -0.935 6.935 24 C -0.087 4.087 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.244 0.756 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.487 -20.750 -9.999 23.929 hybrid contribution -0.310 0.517 0.377 0.711 sum 6.177 -20.233 -9.622 23.240 Atomic orbital electron populations 1.20844 0.81969 0.96217 0.99152 1.43591 1.02029 0.99771 1.83685 1.19137 0.98732 0.85597 1.35211 0.91528 1.24985 0.97904 0.98642 0.97592 1.70076 1.20724 1.27601 1.36382 0.86203 0.78816 0.83710 0.77496 1.21331 1.21647 1.20355 1.20686 0.98903 0.90867 0.89252 1.24148 0.75707 0.78172 0.96115 1.90651 1.48043 1.52001 1.46538 1.44310 1.57944 1.25786 1.05653 1.17983 0.93548 0.96708 0.86778 1.21611 0.98355 0.96131 0.93059 1.21191 0.98252 0.98258 0.96107 1.20822 0.92079 0.96088 0.98261 1.30219 1.20888 1.19870 1.01813 1.05049 0.74589 0.77339 0.74710 1.30229 1.12704 1.24440 1.12622 1.93582 1.85517 1.84116 1.30438 1.93592 1.55018 1.78992 1.65896 1.20617 0.95392 0.98052 0.94618 0.94720 0.93585 0.98419 0.93576 0.89809 0.90791 0.75628 0.83863 0.84899 0.84349 0.84993 0.85175 0.84956 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.01 8.99 59.85 0.54 4.55 16 2 N -0.57 -14.32 2.41 -182.49 -0.44 -14.76 16 3 C -0.26 -7.19 9.64 -15.06 -0.15 -7.33 16 4 H 0.07 1.86 7.87 -52.49 -0.41 1.45 16 5 C 0.01 0.21 5.06 -17.43 -0.09 0.12 16 6 N -0.90 -26.23 10.84 55.49 0.60 -25.63 16 7 Si 0.91 22.37 29.58 -169.99 -5.03 17.34 16 8 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.14 2.58 6.13 -5.20 -0.03 2.55 16 12 C 0.47 8.71 7.64 -10.99 -0.08 8.63 16 13 O -0.50 -11.47 14.08 5.55 0.08 -11.39 16 14 N -0.69 -9.44 5.34 -9.86 -0.05 -9.50 16 15 C 0.15 2.04 6.29 -83.69 -0.53 1.51 16 16 C -0.07 -1.02 8.66 -39.39 -0.34 -1.37 16 17 C -0.12 -1.40 10.04 -39.61 -0.40 -1.80 16 18 C -0.05 -0.56 9.47 -39.55 -0.37 -0.93 16 19 C -0.64 -6.76 5.65 -39.61 -0.22 -6.98 16 20 S 2.50 21.31 5.80 -107.50 -0.62 20.68 16 21 C -0.65 -2.45 10.80 101.05 1.09 -1.36 16 22 O -0.94 -10.91 17.12 -57.54 -0.99 -11.90 16 23 O -0.94 -11.23 17.12 -57.54 -0.99 -12.22 16 24 C -0.07 -0.76 9.38 -39.39 -0.37 -1.13 16 25 H 0.03 0.89 7.44 -51.93 -0.39 0.50 16 26 H 0.05 1.25 7.29 -51.93 -0.38 0.87 16 27 H 0.00 -0.06 8.05 -51.93 -0.42 -0.48 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.41 3.94 8.82 -40.82 -0.36 3.58 16 32 H 0.14 2.33 6.38 -52.49 -0.33 2.00 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 34 H 0.14 1.15 7.56 -52.49 -0.40 0.76 16 35 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.13 0.30 8.14 -51.92 -0.42 -0.12 16 37 H 0.13 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.14 1.37 7.57 -52.49 -0.40 0.97 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -38.77 339.24 -8.02 -46.79 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.75 Total: -1.00 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.95 Total: -3.55 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.11 Total: -49.88 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.89 Total: -35.51 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.03 Total: 17.34 kcal Atomic # 16 Polarization: 21.31 SS G_CDS: -0.62 Total: 20.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.77 -8.02 -46.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727830013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.090 kcal (2) G-P(sol) polarization free energy of solvation -38.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds