Wall clock time and date at job start Fri Apr 10 2020 18:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36931 * 119.99754 * 2 1 4 4 H 1.07999 * 120.00114 * 203.71793 * 3 2 1 5 5 C 1.38818 * 120.00023 * 23.72258 * 3 2 1 6 6 N 1.31619 * 119.99673 * 14.28097 * 5 3 2 7 7 Si 1.86800 * 119.99867 * 194.27509 * 5 3 2 8 8 H 1.48494 * 109.47285 * 90.00460 * 7 5 3 9 9 H 1.48502 * 109.47041 * 210.00505 * 7 5 3 10 10 H 1.48497 * 109.47271 * 330.00115 * 7 5 3 11 11 C 1.46499 * 119.99792 * 180.02562 * 2 1 3 12 12 C 1.50698 * 109.47301 * 90.00184 * 11 2 1 13 13 O 1.21290 * 119.99827 * 359.97438 * 12 11 2 14 14 N 1.34772 * 119.99803 * 179.97438 * 12 11 2 15 15 C 1.39932 * 120.00009 * 174.78103 * 14 12 11 16 16 C 1.38897 * 120.06867 * 327.15342 * 15 14 12 17 17 C 1.38093 * 119.92710 * 179.72045 * 16 15 14 18 18 C 1.38303 * 120.06955 * 0.57145 * 17 16 15 19 19 C 1.38254 * 120.13981 * 359.67856 * 18 17 16 20 20 S 1.76204 * 119.96344 * 180.02562 * 19 18 17 21 21 C 1.81403 * 104.44682 * 270.02031 * 20 19 18 22 22 O 1.42103 * 104.27773 * 26.08795 * 20 19 18 23 23 O 1.42101 * 104.27913 * 153.95034 * 20 19 18 24 24 C 1.38135 * 120.07653 * 0.04448 * 19 18 17 25 25 H 1.09002 * 109.47061 * 273.18651 * 1 2 3 26 26 H 1.08992 * 109.47240 * 33.19224 * 1 2 3 27 27 H 1.09007 * 109.46758 * 153.18840 * 1 2 3 28 28 H 0.97011 * 119.99197 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46865 * 210.00214 * 11 2 1 30 30 H 1.09002 * 109.47224 * 329.99355 * 11 2 1 31 31 H 0.96997 * 120.00579 * 354.78104 * 14 12 11 32 32 H 1.08001 * 120.03183 * 359.96954 * 16 15 14 33 33 H 1.08000 * 119.96004 * 180.25295 * 17 16 15 34 34 H 1.07995 * 119.92983 * 179.70363 * 18 17 16 35 35 H 1.09002 * 109.47356 * 60.00156 * 21 20 19 36 36 H 1.09000 * 109.46906 * 179.97438 * 21 20 19 37 37 H 1.08997 * 109.47229 * 299.99670 * 21 20 19 38 38 H 1.07995 * 120.03626 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1613 1.2254 -0.3762 5 6 1.5435 2.3373 0.4837 6 7 0.4379 2.2508 1.1926 7 14 2.2971 4.0092 0.1285 8 1 1.7376 4.5453 -1.1383 9 1 1.9827 4.9404 1.2417 10 1 3.7700 3.8711 -0.0002 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7032 -1.4215 13 8 2.0543 -1.0204 -2.3431 14 7 3.1117 -2.8503 -1.6682 15 6 3.2500 -3.3097 -2.9827 16 6 2.2460 -3.0712 -3.9125 17 6 2.3881 -3.5209 -5.2105 18 6 3.5233 -4.2182 -5.5819 19 6 4.5220 -4.4617 -4.6574 20 16 5.9666 -5.3500 -5.1359 21 6 5.5568 -7.0875 -4.8136 22 8 6.0762 -5.1144 -6.5329 23 8 6.9695 -4.8990 -4.2359 24 6 4.3886 -4.0097 -3.3590 25 1 -0.3633 0.0571 1.0261 26 1 -0.3633 0.8599 -0.5625 27 1 -0.3633 -0.9173 -0.4636 28 1 0.0146 3.0554 1.5308 29 1 3.1499 -1.1386 0.5134 30 1 1.6085 -2.0286 0.5130 31 1 3.4930 -3.3576 -0.9347 32 1 1.3571 -2.5313 -3.6217 33 1 1.6097 -3.3322 -5.9349 34 1 3.6299 -4.5730 -6.5963 35 1 4.6885 -7.3724 -5.4078 36 1 6.4044 -7.7170 -5.0847 37 1 5.3313 -7.2173 -3.7551 38 1 5.1693 -4.1998 -2.6375 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727830013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:10 Heat of formation + Delta-G solvation = -68.711961 kcal Electronic energy + Delta-G solvation = -23229.672321 eV Core-core repulsion = 19585.892408 eV Total energy + Delta-G solvation = -3643.779913 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.49646 -39.56779 -38.10714 -37.16428 -36.93519 -35.73093 -33.40196 -32.31883 -31.12243 -30.19750 -28.71889 -27.89248 -24.76117 -24.15907 -23.09171 -21.55221 -19.93318 -19.18817 -18.78193 -18.14773 -17.39230 -17.16885 -16.96556 -16.86691 -16.57234 -16.27073 -15.60575 -15.47692 -15.09173 -14.80948 -14.70426 -14.15542 -13.92108 -13.87018 -13.79254 -13.32141 -13.16833 -13.10354 -13.05401 -12.86395 -12.68326 -12.61188 -12.38116 -12.18418 -12.08216 -11.93159 -11.72019 -11.46481 -11.00337 -10.62565 -10.28546 -9.23079 -8.86832 -7.91138 -5.39094 -0.82435 -0.18109 0.17983 1.41114 1.44988 1.52328 1.68391 1.90614 2.09383 2.47022 2.52647 3.09048 3.23443 3.26542 3.62276 3.77210 3.98191 4.05246 4.12427 4.18308 4.23932 4.45033 4.54158 4.54611 4.64612 4.71125 4.76574 4.96207 5.03165 5.16117 5.26179 5.29937 5.40188 5.55440 5.62634 5.89797 6.22855 6.51180 7.06505 7.28359 7.75930 8.17487 9.12762 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.025780 B = 0.002873 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.841420 B = 9744.583362 C = 9988.486451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.594 5.594 3 C -0.264 4.264 4 H 0.060 0.940 5 C -0.045 4.045 6 N -0.930 5.930 7 Si 0.964 3.036 8 H -0.293 1.293 9 H -0.286 1.286 10 H -0.270 1.270 11 C 0.133 3.867 12 C 0.480 3.520 13 O -0.554 6.554 14 N -0.668 5.668 15 C 0.121 3.879 16 C -0.096 4.096 17 C -0.123 4.123 18 C -0.050 4.050 19 C -0.641 4.641 20 S 2.511 3.489 21 C -0.619 4.619 22 O -0.975 6.975 23 O -0.978 6.978 24 C -0.063 4.063 25 H 0.020 0.980 26 H 0.009 0.991 27 H 0.024 0.976 28 H 0.251 0.749 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.429 0.571 32 H 0.116 0.884 33 H 0.151 0.849 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.155 0.845 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -24.917 -9.862 27.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.314 5.314 3 C -0.394 4.394 4 H 0.077 0.923 5 C -0.240 4.240 6 N -0.576 5.576 7 Si 0.793 3.207 8 H -0.221 1.221 9 H -0.212 1.212 10 H -0.194 1.194 11 C 0.002 3.998 12 C 0.267 3.733 13 O -0.429 6.429 14 N -0.317 5.317 15 C 0.025 3.975 16 C -0.117 4.117 17 C -0.142 4.142 18 C -0.070 4.070 19 C -0.727 4.727 20 S 2.693 3.307 21 C -0.773 4.773 22 O -0.973 6.973 23 O -0.975 6.975 24 C -0.084 4.084 25 H 0.038 0.962 26 H 0.027 0.973 27 H 0.043 0.957 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.268 0.732 32 H 0.134 0.866 33 H 0.169 0.831 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.064 -23.820 -10.645 27.308 hybrid contribution -0.711 1.195 0.467 1.467 sum 7.354 -22.625 -10.178 25.876 Atomic orbital electron populations 1.20552 0.82443 0.95852 0.97775 1.43734 1.02180 1.01103 1.84412 1.19334 0.98613 0.87226 1.34217 0.92251 1.25681 0.98705 1.01598 0.98060 1.70191 1.21878 1.27963 1.37549 0.85316 0.78437 0.80128 0.76843 1.22065 1.21157 1.19442 1.20971 0.99669 0.89344 0.89854 1.23573 0.75711 0.78961 0.95079 1.90645 1.50581 1.54032 1.47665 1.43800 1.56617 1.24468 1.06816 1.18125 0.94662 0.98285 0.86416 1.21555 0.98138 0.97382 0.94630 1.21437 0.99404 0.97948 0.95431 1.21184 0.91329 0.94982 0.99463 1.30656 1.21338 1.19482 1.01173 1.04858 0.73208 0.79408 0.73226 1.30004 1.14783 1.17815 1.14746 1.93537 1.85658 1.85911 1.32145 1.93542 1.56270 1.81303 1.66400 1.20839 0.94845 0.97040 0.95679 0.96192 0.97254 0.95707 0.93959 0.88243 0.87261 0.73210 0.86579 0.83102 0.81827 0.82564 0.82675 0.82687 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 8.99 127.77 1.15 10.17 16 2 N -0.59 -30.04 2.41 -731.29 -1.76 -31.80 16 3 C -0.26 -14.96 9.64 84.04 0.81 -14.15 16 4 H 0.06 3.37 7.87 -2.91 -0.02 3.35 16 5 C -0.04 -2.56 5.06 84.86 0.43 -2.13 16 6 N -0.93 -55.29 10.84 21.65 0.23 -55.05 16 7 Si 0.96 46.78 29.58 68.60 2.03 48.81 16 8 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 9 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 C 0.13 4.90 6.13 85.63 0.53 5.43 16 12 C 0.48 17.60 7.64 87.66 0.67 18.27 16 13 O -0.55 -26.05 14.08 -3.06 -0.04 -26.09 16 14 N -0.67 -17.60 5.34 -303.50 -1.62 -19.23 16 15 C 0.12 3.27 6.29 38.15 0.24 3.51 16 16 C -0.10 -2.81 8.66 22.39 0.19 -2.62 16 17 C -0.12 -2.81 10.04 22.25 0.22 -2.59 16 18 C -0.05 -0.97 9.47 22.29 0.21 -0.76 16 19 C -0.64 -12.12 5.65 22.25 0.13 -11.99 16 20 S 2.51 36.07 5.80 -56.49 -0.33 35.74 16 21 C -0.62 -1.40 10.80 113.37 1.22 -0.18 16 22 O -0.98 -20.73 17.12 -127.65 -2.19 -22.91 16 23 O -0.98 -21.65 17.12 -127.65 -2.19 -23.83 16 24 C -0.06 -1.35 9.38 22.39 0.21 -1.14 16 25 H 0.02 1.05 7.44 -2.39 -0.02 1.03 16 26 H 0.01 0.49 7.29 -2.39 -0.02 0.48 16 27 H 0.02 1.08 8.05 -2.38 -0.02 1.06 16 28 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 29 H 0.10 3.35 8.04 -2.39 -0.02 3.33 16 30 H 0.11 3.24 8.07 -2.39 -0.02 3.22 16 31 H 0.43 7.36 8.82 -92.71 -0.82 6.54 16 32 H 0.12 4.00 6.38 -2.91 -0.02 3.98 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.16 2.27 7.56 -2.91 -0.02 2.25 16 35 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.16 -0.19 8.14 -2.39 -0.02 -0.21 16 37 H 0.15 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.16 2.72 7.57 -2.91 -0.02 2.70 16 Total: -1.00 -87.63 339.24 0.42 -87.20 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.27 Total: 5.34 kcal Atomic # 6 Polarization: -4.19 SS G_CDS: 6.01 Total: 1.82 kcal Atomic # 7 Polarization: -102.93 SS G_CDS: -3.15 Total: -106.07 kcal Atomic # 8 Polarization: -68.43 SS G_CDS: -4.41 Total: -72.84 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Atomic # 16 Polarization: 36.07 SS G_CDS: -0.33 Total: 35.74 kcal Total: -87.63 0.42 -87.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727830013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.492 kcal (2) G-P(sol) polarization free energy of solvation -87.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds