Wall clock time and date at job start Fri Apr 10 2020 18:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00107 * 2 1 4 4 H 1.48493 * 109.47275 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47166 * 120.00261 * 3 2 1 6 6 H 1.48500 * 109.47237 * 240.00090 * 3 2 1 7 7 C 1.37880 * 119.99748 * 180.27821 * 2 1 3 8 8 H 1.08005 * 119.99706 * 179.72718 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.72250 * 7 2 1 10 10 N 1.46503 * 109.47187 * 180.02562 * 9 7 2 11 11 C 1.34960 * 125.97168 * 124.71443 * 10 9 7 12 12 C 1.35242 * 107.85839 * 179.83982 * 11 10 9 13 13 C 1.40409 * 107.86704 * 0.42197 * 12 11 10 14 14 N 1.40148 * 125.97469 * 179.71805 * 13 12 11 15 15 C 1.34781 * 119.99997 * 174.94245 * 14 13 12 16 16 S 1.71200 * 119.99861 * 5.10879 * 15 14 13 17 17 N 1.34769 * 119.99789 * 185.11440 * 15 14 13 18 18 C 1.46505 * 119.99807 * 179.97438 * 17 15 14 19 19 C 1.52997 * 109.47196 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47366 * 180.02562 * 19 18 17 21 21 C 1.50694 * 109.47380 * 179.97438 * 20 19 18 22 22 O 1.20823 * 119.99822 * 359.97438 * 21 20 19 23 23 O 1.34229 * 120.00258 * 179.97438 * 21 20 19 24 24 N 1.31218 * 108.05215 * 359.74133 * 13 12 11 25 25 H 0.96993 * 120.00553 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46977 * 300.00200 * 9 7 2 27 27 H 1.08999 * 109.47169 * 60.00032 * 9 7 2 28 28 H 1.07996 * 126.07430 * 359.96911 * 11 10 9 29 29 H 1.08004 * 126.06756 * 180.16672 * 12 11 10 30 30 H 0.96997 * 119.99976 * 354.94123 * 14 13 12 31 31 H 0.96997 * 120.00492 * 359.97438 * 17 15 14 32 32 H 1.09010 * 109.46797 * 299.99608 * 18 17 15 33 33 H 1.08999 * 109.47646 * 59.99392 * 18 17 15 34 34 H 1.09010 * 109.46762 * 299.99427 * 19 18 17 35 35 H 1.08999 * 109.47174 * 59.99540 * 19 18 17 36 36 H 1.09007 * 109.46972 * 299.99843 * 20 19 18 37 37 H 1.09000 * 109.46922 * 59.99395 * 20 19 18 38 38 H 0.96691 * 117.00273 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0044 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2509 -2.4992 -0.0058 10 7 2.2029 -3.6127 -0.0119 11 6 2.2486 -4.6215 0.8835 12 6 3.2623 -5.4440 0.5302 13 6 3.8665 -4.9133 -0.6208 14 7 4.9601 -5.4622 -1.3041 15 6 5.3814 -4.9072 -2.4578 16 16 4.6666 -3.4572 -3.0213 17 7 6.3653 -5.4937 -3.1679 18 6 6.8229 -4.8908 -4.4222 19 6 7.9376 -5.7488 -5.0238 20 6 8.4159 -5.1188 -6.3334 21 6 9.5144 -5.9637 -6.9256 22 8 9.8777 -6.9665 -6.3581 23 8 10.0891 -5.6021 -8.0835 24 7 3.2285 -3.8133 -0.9445 25 1 -0.4850 -0.8399 0.0004 26 1 0.6279 -2.5590 0.8867 27 1 0.6205 -2.5548 -0.8933 28 1 1.5911 -4.7502 1.7305 29 1 3.5576 -6.3466 1.0446 30 1 5.4139 -6.2414 -0.9467 31 1 6.7706 -6.3151 -2.8485 32 1 5.9900 -4.8343 -5.1232 33 1 7.2015 -3.8876 -4.2264 34 1 8.7707 -5.8057 -4.3229 35 1 7.5585 -6.7518 -5.2197 36 1 7.5832 -5.0615 -7.0344 37 1 8.7951 -4.1160 -6.1370 38 1 10.7894 -6.1753 -8.4238 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739075634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:21 Heat of formation + Delta-G solvation = -20.373614 kcal Electronic energy + Delta-G solvation = -22190.812388 eV Core-core repulsion = 18581.421334 eV Total energy + Delta-G solvation = -3609.391054 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06360 -41.25269 -39.96136 -37.43257 -36.96393 -35.78451 -34.24556 -32.48040 -30.85781 -29.04855 -27.89690 -25.53720 -24.69806 -24.01618 -22.21157 -22.03887 -21.41973 -19.34097 -19.10100 -19.05624 -18.55122 -17.63387 -17.41730 -17.07516 -16.65320 -16.29745 -15.97474 -15.81248 -15.59691 -15.17229 -14.84039 -14.15019 -14.08919 -13.95552 -13.60125 -13.33344 -13.31636 -13.08649 -12.64615 -12.57443 -12.52960 -12.09977 -12.05509 -11.94207 -11.65117 -11.46338 -11.30076 -10.82886 -10.63626 -9.70619 -9.33084 -8.92718 -8.69598 -8.07088 -6.45913 0.12635 0.84361 1.21732 1.22045 1.33047 1.50090 1.58933 1.79601 1.96736 2.10847 2.25703 2.51332 2.61198 3.07300 3.71162 3.85062 3.90233 3.92625 4.17252 4.43376 4.46462 4.54854 4.61429 4.71359 4.73783 4.78482 4.83603 5.00460 5.02461 5.05378 5.29732 5.61238 5.64448 5.82670 5.98714 6.07565 6.29101 6.39380 6.53575 6.99762 7.15006 7.28222 8.65195 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.017250 B = 0.002696 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.765032 B =10381.579681 C =11720.738105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.022 4.022 3 Si 1.116 2.884 4 H -0.272 1.272 5 H -0.268 1.268 6 H -0.285 1.285 7 C -0.607 4.607 8 H 0.039 0.961 9 C 0.263 3.737 10 N -0.365 5.365 11 C 0.048 3.952 12 C -0.283 4.283 13 C 0.230 3.770 14 N -0.570 5.570 15 C 0.558 3.442 16 S -0.653 6.653 17 N -0.655 5.655 18 C 0.126 3.874 19 C -0.109 4.109 20 C -0.111 4.111 21 C 0.486 3.514 22 O -0.555 6.555 23 O -0.516 6.516 24 N -0.241 5.241 25 H 0.259 0.741 26 H 0.052 0.948 27 H 0.006 0.994 28 H 0.198 0.802 29 H 0.187 0.813 30 H 0.434 0.566 31 H 0.419 0.581 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.574 -18.352 -8.644 28.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.221 4.221 3 Si 0.938 3.062 4 H -0.197 1.197 5 H -0.193 1.193 6 H -0.211 1.211 7 C -0.645 4.645 8 H 0.057 0.943 9 C 0.142 3.858 10 N -0.146 5.146 11 C -0.100 4.100 12 C -0.315 4.315 13 C -0.027 4.027 14 N -0.199 5.199 15 C 0.197 3.803 16 S -0.527 6.527 17 N -0.286 5.286 18 C 0.003 3.997 19 C -0.147 4.147 20 C -0.149 4.149 21 C 0.331 3.669 22 O -0.446 6.446 23 O -0.330 6.330 24 N -0.070 5.070 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.215 0.785 29 H 0.204 0.796 30 H 0.277 0.723 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 18.545 -14.659 -9.644 25.531 hybrid contribution 1.092 -4.015 0.786 4.234 sum 19.637 -18.674 -8.857 28.509 Atomic orbital electron populations 1.70934 1.07303 1.29976 1.48140 1.27168 0.96516 1.05932 0.92464 0.82929 0.74172 0.71561 0.77560 1.19664 1.19265 1.21148 1.22230 0.94382 0.92285 1.55581 0.94278 1.19243 0.86641 0.83344 0.96586 1.49706 1.24891 1.19603 1.20399 1.23170 1.00719 0.89178 0.96897 1.21159 1.02602 1.06973 1.00739 1.19572 0.92185 0.95446 0.95519 1.41283 1.28604 1.30886 1.19149 1.21838 0.84550 0.90756 0.83177 1.94158 1.66722 1.15040 1.76764 1.44728 1.33561 1.27168 1.23151 1.21748 0.97787 0.97584 0.82617 1.21490 0.97572 0.99432 0.96174 1.21257 0.96210 1.00144 0.97302 1.23683 0.81767 0.83496 0.77961 1.90731 1.63616 1.28288 1.61985 1.84513 1.53092 1.57259 1.38118 1.80046 1.00908 1.15084 1.10929 0.93119 0.93075 0.97622 0.78532 0.79553 0.72328 0.74083 0.89950 0.90011 0.89790 0.89753 0.85328 0.85362 0.71107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.06 13.65 21.45 0.29 -56.77 16 2 C -0.02 -1.31 5.46 84.66 0.46 -0.84 16 3 Si 1.12 53.90 29.90 68.60 2.05 55.95 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 7 C -0.61 -36.91 9.24 25.60 0.24 -36.67 16 8 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 9 C 0.26 14.24 5.57 85.63 0.48 14.72 16 10 N -0.36 -17.38 3.67 -351.84 -1.29 -18.67 16 11 C 0.05 1.71 11.43 83.52 0.96 2.67 16 12 C -0.28 -8.51 10.83 22.11 0.24 -8.27 16 13 C 0.23 8.37 7.76 133.33 1.04 9.41 16 14 N -0.57 -14.65 5.45 -194.02 -1.06 -15.71 16 15 C 0.56 15.98 7.95 179.06 1.42 17.40 16 16 S -0.65 -29.02 25.81 -56.49 -1.46 -30.48 16 17 N -0.66 -10.80 5.56 -350.15 -1.95 -12.75 16 18 C 0.13 1.89 5.13 86.38 0.44 2.33 16 19 C -0.11 -0.96 4.62 30.59 0.14 -0.82 16 20 C -0.11 -0.83 5.81 29.85 0.17 -0.66 16 21 C 0.49 5.54 8.33 71.23 0.59 6.13 16 22 O -0.55 -10.04 16.74 21.97 0.37 -9.68 16 23 O -0.52 -4.15 13.42 -51.41 -0.69 -4.84 16 24 N -0.24 -11.72 9.05 -54.46 -0.49 -12.22 16 25 H 0.26 15.77 7.22 -92.71 -0.67 15.10 16 26 H 0.05 2.62 7.94 -2.39 -0.02 2.60 16 27 H 0.01 0.35 8.00 -2.39 -0.02 0.33 16 28 H 0.20 5.35 8.06 -2.91 -0.02 5.32 16 29 H 0.19 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.43 6.09 8.84 -92.71 -0.82 5.27 16 31 H 0.42 3.37 8.49 -92.71 -0.79 2.58 16 32 H 0.08 1.47 7.99 -2.38 -0.02 1.45 16 33 H 0.08 1.47 7.99 -2.39 -0.02 1.46 16 34 H 0.08 0.74 8.10 -2.38 -0.02 0.72 16 35 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 36 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.43 0.22 9.10 -74.06 -0.67 -0.45 16 Total: -1.00 -94.36 348.71 0.90 -93.46 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -1.05 Total: 6.30 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 6.18 Total: 5.40 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.50 Total: -116.11 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.32 Total: -14.52 kcal Atomic # 14 Polarization: 53.90 SS G_CDS: 2.05 Total: 55.95 kcal Atomic # 16 Polarization: -29.02 SS G_CDS: -1.46 Total: -30.48 kcal Total: -94.36 0.90 -93.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739075634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.088 kcal (2) G-P(sol) polarization free energy of solvation -94.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds