Wall clock time and date at job start Fri Apr 10 2020 18:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 119.99684 * 2 1 4 4 H 1.48504 * 109.47134 * 264.98527 * 3 2 1 5 5 H 1.48501 * 109.47289 * 24.98681 * 3 2 1 6 6 H 1.48510 * 109.46985 * 144.98946 * 3 2 1 7 7 C 1.38949 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00331 * 201.39778 * 7 2 1 9 9 N 1.37098 * 119.99807 * 21.38667 * 7 2 1 10 10 C 1.46505 * 120.00048 * 11.51333 * 9 7 2 11 11 C 1.50700 * 109.47037 * 264.66258 * 10 9 7 12 12 O 1.20823 * 120.00059 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99730 * 179.97438 * 11 10 9 14 14 C 1.34778 * 119.99684 * 191.51702 * 9 7 2 15 15 O 1.21290 * 120.00444 * 359.97438 * 14 9 7 16 16 C 1.50705 * 119.99563 * 180.02562 * 14 9 7 17 17 C 1.52999 * 109.46839 * 179.97438 * 16 14 9 18 18 C 1.53004 * 109.46985 * 179.97438 * 17 16 14 19 19 N 1.46503 * 109.46776 * 180.02562 * 18 17 16 20 20 C 1.33875 * 122.76031 * 269.70629 * 19 18 17 21 21 O 1.21227 * 125.40166 * 359.97438 * 20 19 18 22 22 C 1.51317 * 109.20509 * 179.84604 * 20 19 18 23 23 C 1.54225 * 103.55334 * 0.38941 * 22 20 19 24 24 C 1.33879 * 122.76507 * 90.00550 * 19 18 17 25 25 O 1.21229 * 125.39103 * 359.97241 * 24 19 18 26 26 H 0.96993 * 119.99912 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47111 * 24.66632 * 10 9 7 28 28 H 1.09000 * 109.46831 * 144.66656 * 10 9 7 29 29 H 0.96702 * 117.00121 * 180.02562 * 13 11 10 30 30 H 1.08996 * 109.47211 * 59.99847 * 16 14 9 31 31 H 1.08993 * 109.47335 * 299.99369 * 16 14 9 32 32 H 1.08998 * 109.47669 * 300.00172 * 17 16 14 33 33 H 1.09005 * 109.47131 * 60.00007 * 17 16 14 34 34 H 1.08993 * 109.47371 * 299.99899 * 18 17 16 35 35 H 1.08996 * 109.47029 * 60.00287 * 18 17 16 36 36 H 1.09006 * 110.79932 * 241.78067 * 22 20 19 37 37 H 1.09002 * 110.54967 * 118.88198 * 22 20 19 38 38 H 1.09006 * 110.60330 * 241.25511 * 23 22 20 39 39 H 1.09007 * 110.60573 * 118.29686 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6015 1.9853 -1.3947 5 1 1.3965 2.6810 0.5914 6 1 3.4887 1.4731 0.8033 7 6 2.0090 -1.2033 -0.0005 8 1 3.0331 -1.2356 0.3407 9 7 1.3943 -2.3495 -0.4340 10 6 0.1063 -2.2726 -1.1278 11 6 -1.0106 -2.4852 -0.1386 12 8 -0.7567 -2.6803 1.0264 13 8 -2.2874 -2.4566 -0.5516 14 6 1.9751 -3.5471 -0.2218 15 8 3.0417 -3.6108 0.3522 16 6 1.2997 -4.8071 -0.6989 17 6 2.1623 -6.0172 -0.3350 18 6 1.4764 -7.2964 -0.8188 19 7 2.3022 -8.4551 -0.4698 20 6 3.2430 -8.9463 -1.2858 21 8 3.5207 -8.5082 -2.3815 22 6 3.9070 -10.1332 -0.6224 23 6 3.1721 -10.2501 0.7285 24 6 2.1741 -9.1135 0.6888 25 8 1.3840 -8.8418 1.5672 26 1 -0.4850 0.8400 -0.0004 27 1 0.0005 -1.2911 -1.5899 28 1 0.0615 -3.0433 -1.8973 29 1 -2.9692 -2.5978 0.1195 30 1 1.1726 -4.7640 -1.7805 31 1 0.3241 -4.8994 -0.2217 32 1 3.1379 -5.9248 -0.8124 33 1 2.2899 -6.0604 0.7467 34 1 0.5011 -7.3887 -0.3410 35 1 1.3485 -7.2534 -1.9003 36 1 4.9693 -9.9452 -0.4663 37 1 3.7617 -11.0349 -1.2175 38 1 3.8689 -10.1201 1.5566 39 1 2.6590 -11.2088 0.8044 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078115.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:24 Heat of formation + Delta-G solvation = -180.540618 kcal Electronic energy + Delta-G solvation = -26284.600624 eV Core-core repulsion = 22193.218585 eV Total energy + Delta-G solvation = -4091.382038 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.125 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.98625 -39.49743 -38.68201 -38.23624 -36.07182 -35.40439 -34.84396 -34.39931 -32.11968 -31.52250 -27.82899 -27.12892 -26.40121 -24.65314 -22.54125 -22.20293 -21.09897 -19.60418 -18.81927 -17.38753 -17.21363 -17.14005 -16.89726 -16.61870 -16.11603 -15.74032 -14.97926 -14.88565 -14.55812 -14.46727 -14.36787 -14.10987 -14.10821 -14.02541 -13.21846 -13.11296 -12.69551 -12.28617 -12.14178 -11.76002 -11.69182 -11.65910 -11.42612 -11.34650 -10.94111 -10.69558 -10.58272 -10.44507 -10.38307 -10.26500 -10.17089 -9.81745 -9.69799 -9.04753 -8.54306 -7.97172 -6.46502 -3.88765 1.34394 2.36769 2.56336 3.13836 3.23894 3.28953 3.40374 3.63385 3.82819 3.96658 4.05108 4.14984 4.22570 4.51839 4.66974 4.96150 5.03058 5.12079 5.17046 5.20921 5.26136 5.30156 5.37905 5.60190 5.70261 5.82110 5.85873 6.07499 6.32989 6.46692 6.54652 6.65446 6.72108 7.15792 7.45567 7.53156 7.61943 7.94929 8.35209 8.98308 9.07300 9.29305 9.82335 10.61500 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.020147 B = 0.003395 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.452224 B = 8245.092408 C = 8882.358996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.027 3.973 3 Si 0.931 3.069 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.109 0.891 9 N -0.434 5.434 10 C 0.141 3.859 11 C 0.489 3.511 12 O -0.508 6.508 13 O -0.533 6.533 14 C 0.461 3.539 15 O -0.577 6.577 16 C -0.130 4.130 17 C -0.111 4.111 18 C 0.096 3.904 19 N -0.572 5.572 20 C 0.525 3.475 21 O -0.480 6.480 22 C -0.157 4.157 23 C -0.157 4.157 24 C 0.523 3.477 25 O -0.477 6.477 26 H 0.271 0.729 27 H 0.139 0.861 28 H 0.076 0.924 29 H 0.392 0.608 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.291 -17.676 -4.687 18.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.127 0.873 9 N -0.153 5.153 10 C 0.014 3.986 11 C 0.329 3.671 12 O -0.394 6.394 13 O -0.344 6.344 14 C 0.250 3.750 15 O -0.460 6.460 16 C -0.171 4.171 17 C -0.150 4.150 18 C -0.024 4.024 19 N -0.315 5.315 20 C 0.314 3.686 21 O -0.351 6.351 22 C -0.197 4.197 23 C -0.197 4.197 24 C 0.312 3.688 25 O -0.348 6.348 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.094 0.906 29 H 0.248 0.752 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.783 -17.126 -4.481 17.720 hybrid contribution -0.478 0.991 0.614 1.260 sum 0.305 -16.135 -3.866 16.594 Atomic orbital electron populations 1.69821 1.06026 1.27967 1.48944 1.25209 0.95383 0.99951 0.96967 0.85855 0.79351 0.80474 0.78540 1.20191 1.21102 1.19448 1.19780 0.98014 0.83383 1.41642 0.87295 1.43497 1.15993 1.05782 1.50039 1.20890 0.80944 1.05461 0.91297 1.23971 0.82353 0.70798 0.89952 1.90626 1.83900 1.45095 1.19749 1.84532 1.17971 1.85743 1.46142 1.19928 0.87513 0.84022 0.83550 1.90523 1.23675 1.86258 1.45585 1.21475 0.99960 0.93928 1.01786 1.21540 0.99446 0.91207 1.02765 1.21943 0.94409 0.83741 1.02312 1.46788 1.35521 1.29968 1.19190 1.20817 0.78848 0.84514 0.84462 1.90791 1.62863 1.62794 1.18699 1.22473 1.02621 0.98426 0.96174 1.22476 0.98483 0.99234 0.99492 1.20839 0.83841 0.83530 0.80595 1.90810 1.37168 1.68447 1.38425 0.91828 0.84367 0.90566 0.75182 0.89997 0.90204 0.90710 0.90747 0.88872 0.88781 0.86108 0.86304 0.86122 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.19 9.27 55.50 0.51 -22.67 16 2 C 0.03 0.69 4.95 -17.47 -0.09 0.61 16 3 Si 0.93 20.66 29.60 -169.99 -5.03 15.63 16 4 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.36 9.42 -14.93 -0.14 -8.50 16 8 H 0.11 3.19 7.31 -52.49 -0.38 2.80 16 9 N -0.43 -11.00 2.17 -116.09 -0.25 -11.26 16 10 C 0.14 3.05 4.98 -5.19 -0.03 3.03 16 11 C 0.49 10.82 6.05 36.01 0.22 11.04 16 12 O -0.51 -13.30 17.03 -18.75 -0.32 -13.61 16 13 O -0.53 -9.51 13.42 -39.25 -0.53 -10.03 16 14 C 0.46 11.31 7.44 -10.98 -0.08 11.23 16 15 O -0.58 -16.13 15.59 5.55 0.09 -16.04 16 16 C -0.13 -2.40 4.31 -27.88 -0.12 -2.52 16 17 C -0.11 -1.88 4.83 -26.73 -0.13 -2.01 16 18 C 0.10 1.27 5.56 -4.04 -0.02 1.25 16 19 N -0.57 -6.78 2.55 -115.34 -0.29 -7.08 16 20 C 0.52 5.69 8.08 -11.08 -0.09 5.60 16 21 O -0.48 -6.90 17.47 5.60 0.10 -6.80 16 22 C -0.16 -0.87 7.03 -26.94 -0.19 -1.06 16 23 C -0.16 -0.90 7.03 -26.95 -0.19 -1.09 16 24 C 0.52 5.88 8.08 -11.09 -0.09 5.79 16 25 O -0.48 -7.27 17.48 5.60 0.10 -7.17 16 26 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 27 H 0.14 3.14 6.01 -51.93 -0.31 2.83 16 28 H 0.08 1.32 6.66 -51.93 -0.35 0.98 16 29 H 0.39 5.36 9.10 45.56 0.41 5.78 16 30 H 0.08 1.26 7.41 -51.93 -0.38 0.87 16 31 H 0.08 1.44 7.56 -51.93 -0.39 1.05 16 32 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 33 H 0.07 1.43 8.10 -51.93 -0.42 1.00 16 34 H 0.09 1.19 7.83 -51.93 -0.41 0.78 16 35 H 0.09 1.13 7.82 -51.93 -0.41 0.72 16 36 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.12 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 340.45 15.07 5.13 5.13 Total: -1.00 -37.97 340.45 -5.33 -43.30 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.88 Total: 7.23 kcal Atomic # 6 Polarization: 24.32 SS G_CDS: -0.95 Total: 23.38 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.03 Total: -41.01 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.56 Total: -53.66 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.97 -5.33 -43.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078115.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.238 kcal (2) G-P(sol) polarization free energy of solvation -37.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds