Wall clock time and date at job start Fri Apr 10 2020 18:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39800 * 125.34437 * 2 1 4 4 C 1.30194 * 110.13846 * 180.02562 * 3 2 1 5 5 C 1.45980 * 107.58767 * 0.02562 * 4 3 2 6 6 C 1.39647 * 134.12027 * 179.97438 * 5 4 3 7 7 C 1.39522 * 117.95000 * 179.97438 * 6 5 4 8 8 C 1.47662 * 120.40943 * 179.97438 * 7 6 5 9 9 O 1.21595 * 120.00649 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99781 * 180.02562 * 8 7 6 11 11 C 1.40539 * 120.00202 * 179.97438 * 10 8 7 12 12 C 1.40666 * 126.08525 * 359.69802 * 11 10 8 13 13 N 1.30896 * 108.38964 * 179.81205 * 12 11 10 14 14 N 1.40067 * 108.41020 * 0.44076 * 13 12 11 15 15 C 1.37325 * 126.06907 * 179.69644 * 14 13 12 16 16 H 1.07992 * 120.00075 * 174.15513 * 15 14 13 17 17 C 1.38987 * 119.99779 * 354.15841 * 15 14 13 18 18 N 1.31301 * 120.00232 * 5.93350 * 17 15 14 19 19 Si 1.86799 * 119.99918 * 185.93644 * 17 15 14 20 20 H 1.48505 * 109.47179 * 94.97807 * 19 17 15 21 21 H 1.48491 * 109.47416 * 214.97690 * 19 17 15 22 22 H 1.48503 * 109.47089 * 334.98190 * 19 17 15 23 23 C 1.35697 * 126.08481 * 180.02562 * 11 10 8 24 24 C 1.40196 * 119.17593 * 0.02562 * 7 6 5 25 25 N 1.31191 * 121.37083 * 0.27304 * 24 7 6 26 26 C 1.32922 * 121.84654 * 359.44036 * 25 24 7 27 27 H 1.09003 * 109.46862 * 269.97388 * 1 2 3 28 28 H 1.08999 * 109.47004 * 29.96964 * 1 2 3 29 29 H 1.09002 * 109.47166 * 149.97216 * 1 2 3 30 30 H 1.07999 * 126.21107 * 179.97438 * 4 3 2 31 31 H 1.08002 * 121.02906 * 359.97438 * 6 5 4 32 32 H 0.97002 * 120.00227 * 0.02562 * 10 8 7 33 33 H 1.08001 * 125.79998 * 359.96898 * 12 11 10 34 34 H 0.97000 * 119.99711 * 179.97438 * 18 17 15 35 35 H 1.07998 * 126.24889 * 359.97438 * 23 11 10 36 36 H 1.07993 * 119.31145 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7989 -0.0005 5 6 3.5907 -0.6597 -0.0016 6 6 4.6328 -1.5894 -0.0029 7 6 4.3002 -2.9444 -0.0030 8 6 5.3589 -3.9738 -0.0050 9 8 6.5289 -3.6428 -0.0061 10 7 5.0282 -5.2804 -0.0056 11 6 6.0357 -6.2602 -0.0081 12 6 7.4222 -6.0229 -0.0160 13 7 8.0388 -7.1775 -0.0118 14 7 7.0749 -8.1938 -0.0113 15 6 7.3239 -9.5443 -0.0132 16 1 6.5070 -10.2441 0.0826 17 6 8.6272 -10.0104 -0.1385 18 7 9.6304 -9.1633 -0.1378 19 14 8.9517 -11.8422 -0.3080 20 1 9.0638 -12.1940 -1.7465 21 1 10.2185 -12.1868 0.3859 22 1 7.8308 -12.6020 0.3015 23 6 5.8441 -7.6036 -0.0094 24 6 2.9485 -3.3164 -0.0024 25 7 1.9928 -2.4176 -0.0070 26 6 2.2554 -1.1146 -0.0014 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5143 30 1 4.3743 1.4724 -0.0011 31 1 5.6643 -1.2694 -0.0038 32 1 4.0949 -5.5445 -0.0052 33 1 7.8971 -5.0529 -0.0218 34 1 10.5400 -9.4887 -0.2249 35 1 4.8917 -8.1128 -0.0085 36 1 2.6886 -4.3646 -0.0029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747371825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:36 Heat of formation + Delta-G solvation = 163.503799 kcal Electronic energy + Delta-G solvation = -23752.928319 eV Core-core repulsion = 20048.359588 eV Total energy + Delta-G solvation = -3704.568731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.108 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.83781 -40.01211 -38.96408 -37.67985 -34.38811 -34.04859 -33.21987 -31.89237 -30.68529 -30.14610 -27.89816 -27.04906 -25.06329 -24.14076 -23.70628 -21.21995 -21.16146 -20.52010 -19.49616 -18.03632 -17.92553 -17.19391 -16.61730 -16.14760 -15.62690 -15.43769 -15.04253 -14.67766 -14.50562 -14.07677 -13.85524 -13.65979 -13.41255 -13.27480 -13.13492 -12.89989 -12.77177 -12.52343 -11.70171 -11.47527 -11.39399 -11.28992 -10.95391 -10.72183 -10.53343 -10.19044 -9.96324 -9.33881 -9.25523 -9.18322 -8.81885 -8.56512 -8.06894 -6.71690 -6.57368 -4.23811 0.50204 0.67447 1.81355 2.12860 2.84745 3.01688 3.04744 3.10214 3.45856 3.53894 3.80099 3.84763 3.86176 3.99434 4.30993 4.44737 4.59898 4.63168 4.76361 4.89351 4.95538 5.00353 5.08883 5.15266 5.16109 5.35252 5.84824 5.92022 6.14543 6.23533 6.42013 6.47751 6.88046 6.94283 7.07666 7.08960 7.21984 7.56390 7.84858 8.12774 8.25388 8.60065 8.79757 9.36541 9.65548 10.38850 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.046797 B = 0.002370 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.183700 B =11812.089762 C =12390.417785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.395 5.395 3 N -0.244 5.244 4 C 0.096 3.904 5 C -0.237 4.237 6 C 0.069 3.931 7 C -0.216 4.216 8 C 0.551 3.449 9 O -0.533 6.533 10 N -0.616 5.616 11 C -0.061 4.061 12 C -0.030 4.030 13 N -0.261 5.261 14 N -0.142 5.142 15 C -0.323 4.323 16 H 0.117 0.883 17 C 0.046 3.954 18 N -0.769 5.769 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.264 1.264 23 C -0.082 4.082 24 C 0.201 3.799 25 N -0.506 5.506 26 C 0.324 3.676 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.206 0.794 31 H 0.156 0.844 32 H 0.395 0.605 33 H 0.177 0.823 34 H 0.275 0.725 35 H 0.147 0.853 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.332 13.753 -0.046 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.186 5.186 3 N -0.055 5.055 4 C -0.102 4.102 5 C -0.247 4.247 6 C 0.040 3.960 7 C -0.224 4.224 8 C 0.338 3.662 9 O -0.411 6.411 10 N -0.258 5.258 11 C -0.166 4.166 12 C -0.206 4.206 13 N -0.092 5.092 14 N 0.091 4.909 15 C -0.455 4.455 16 H 0.134 0.866 17 C -0.171 4.171 18 N -0.395 5.395 19 Si 0.758 3.242 20 H -0.196 1.196 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.233 4.233 24 C 0.031 3.969 25 N -0.221 5.221 26 C 0.085 3.915 27 H 0.090 0.910 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.222 0.778 31 H 0.174 0.826 32 H 0.229 0.771 33 H 0.194 0.806 34 H 0.086 0.914 35 H 0.164 0.836 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -15.053 14.207 -0.056 20.698 hybrid contribution -0.012 -0.965 -0.056 0.967 sum -15.065 13.241 -0.111 20.057 Atomic orbital electron populations 1.21828 0.73310 1.04486 1.03325 1.48089 1.06350 1.00044 1.64091 1.76718 1.02766 1.07413 1.18645 1.25147 0.94848 0.92628 0.97612 1.20468 0.94031 0.94772 1.15420 1.21188 0.99412 0.89973 0.85442 1.20758 0.94843 0.94708 1.12042 1.17583 0.87919 0.81750 0.78985 1.90682 1.18803 1.80937 1.50658 1.42362 1.08356 1.04246 1.70807 1.17230 0.88558 0.86772 1.24066 1.24133 0.90500 0.98265 1.07671 1.78255 1.12474 0.92818 1.25675 1.44558 1.01905 1.05449 1.39030 1.19882 0.95021 0.77810 1.52820 0.86566 1.25650 0.95098 1.00865 0.95488 1.70224 0.99515 1.34765 1.35009 0.85813 0.78782 0.80598 0.78967 1.19639 1.20111 1.18774 1.21271 0.90816 0.91397 1.19829 1.22898 0.86977 0.98285 0.88775 1.66654 1.37403 0.98495 1.19501 1.19111 0.88694 0.88161 0.95518 0.91043 0.89404 0.89079 0.77787 0.82593 0.77067 0.80621 0.91447 0.83589 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.79 11.43 59.85 0.68 1.48 16 2 N -0.40 -4.32 4.03 -67.17 -0.27 -4.60 16 3 N -0.24 -2.63 12.39 31.87 0.39 -2.23 16 4 C 0.10 0.90 12.30 -15.15 -0.19 0.71 16 5 C -0.24 -2.73 6.36 -105.20 -0.67 -3.40 16 6 C 0.07 0.83 9.76 -38.58 -0.38 0.46 16 7 C -0.22 -2.85 5.89 -104.84 -0.62 -3.47 16 8 C 0.55 9.38 7.74 -12.41 -0.10 9.28 16 9 O -0.53 -10.97 13.55 5.28 0.07 -10.90 16 10 N -0.62 -10.47 5.42 -10.90 -0.06 -10.53 16 11 C -0.06 -1.36 6.90 -83.86 -0.58 -1.94 16 12 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 13 N -0.26 -7.50 10.42 30.80 0.32 -7.18 16 14 N -0.14 -3.84 3.74 -11.41 -0.04 -3.88 16 15 C -0.32 -8.43 10.24 -14.81 -0.15 -8.58 16 16 H 0.12 2.70 7.84 -52.49 -0.41 2.29 16 17 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 18 N -0.77 -21.29 11.84 55.50 0.66 -20.63 16 19 Si 0.93 18.72 29.56 -169.99 -5.02 13.70 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.08 -1.88 11.49 -16.38 -0.19 -2.07 16 24 C 0.20 2.29 10.69 -17.09 -0.18 2.11 16 25 N -0.51 -6.19 10.37 -12.02 -0.12 -6.32 16 26 C 0.32 4.00 7.96 -156.08 -1.24 2.76 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.16 1.73 7.72 -52.49 -0.41 1.32 16 32 H 0.40 5.01 6.86 -40.82 -0.28 4.73 16 33 H 0.18 4.48 5.91 -52.49 -0.31 4.17 16 34 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.15 2.75 8.06 -52.49 -0.42 2.32 16 36 H 0.17 1.41 6.39 -52.49 -0.34 1.08 16 LS Contribution 323.29 15.07 4.87 4.87 Total: -1.00 -35.48 323.29 -6.08 -41.56 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -2.99 Total: 8.69 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -3.89 Total: -2.54 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: 0.88 Total: -55.37 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.90 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.48 -6.08 -41.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747371825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.061 kcal (2) G-P(sol) polarization free energy of solvation -35.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 163.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds