Wall clock time and date at job start Fri Apr 10 2020 18:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.39800 * 125.34437 * 2 1 4 4 C 1.30194 * 110.13846 * 180.02562 * 3 2 1 5 5 C 1.45980 * 107.58767 * 0.02562 * 4 3 2 6 6 C 1.39647 * 134.12027 * 179.97438 * 5 4 3 7 7 C 1.39522 * 117.95000 * 179.97438 * 6 5 4 8 8 C 1.47662 * 120.40943 * 179.97438 * 7 6 5 9 9 O 1.21595 * 120.00649 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99781 * 180.02562 * 8 7 6 11 11 C 1.40539 * 120.00202 * 179.97438 * 10 8 7 12 12 C 1.40666 * 126.08525 * 359.69802 * 11 10 8 13 13 N 1.30896 * 108.38964 * 179.81205 * 12 11 10 14 14 N 1.40067 * 108.41020 * 0.44076 * 13 12 11 15 15 C 1.37325 * 126.06907 * 179.69644 * 14 13 12 16 16 H 1.07992 * 120.00075 * 174.15513 * 15 14 13 17 17 C 1.38987 * 119.99779 * 354.15841 * 15 14 13 18 18 N 1.31301 * 120.00232 * 5.93350 * 17 15 14 19 19 Si 1.86799 * 119.99918 * 185.93644 * 17 15 14 20 20 H 1.48505 * 109.47179 * 94.97807 * 19 17 15 21 21 H 1.48491 * 109.47416 * 214.97690 * 19 17 15 22 22 H 1.48503 * 109.47089 * 334.98190 * 19 17 15 23 23 C 1.35697 * 126.08481 * 180.02562 * 11 10 8 24 24 C 1.40196 * 119.17593 * 0.02562 * 7 6 5 25 25 N 1.31191 * 121.37083 * 0.27304 * 24 7 6 26 26 C 1.32922 * 121.84654 * 359.44036 * 25 24 7 27 27 H 1.09003 * 109.46862 * 269.97388 * 1 2 3 28 28 H 1.08999 * 109.47004 * 29.96964 * 1 2 3 29 29 H 1.09002 * 109.47166 * 149.97216 * 1 2 3 30 30 H 1.07999 * 126.21107 * 179.97438 * 4 3 2 31 31 H 1.08002 * 121.02906 * 359.97438 * 6 5 4 32 32 H 0.97002 * 120.00227 * 0.02562 * 10 8 7 33 33 H 1.08001 * 125.79998 * 359.96898 * 12 11 10 34 34 H 0.97000 * 119.99711 * 179.97438 * 18 17 15 35 35 H 1.07998 * 126.24889 * 359.97438 * 23 11 10 36 36 H 1.07993 * 119.31145 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7989 -0.0005 5 6 3.5907 -0.6597 -0.0016 6 6 4.6328 -1.5894 -0.0029 7 6 4.3002 -2.9444 -0.0030 8 6 5.3589 -3.9738 -0.0050 9 8 6.5289 -3.6428 -0.0061 10 7 5.0282 -5.2804 -0.0056 11 6 6.0357 -6.2602 -0.0081 12 6 7.4222 -6.0229 -0.0160 13 7 8.0388 -7.1775 -0.0118 14 7 7.0749 -8.1938 -0.0113 15 6 7.3239 -9.5443 -0.0132 16 1 6.5070 -10.2441 0.0826 17 6 8.6272 -10.0104 -0.1385 18 7 9.6304 -9.1633 -0.1378 19 14 8.9517 -11.8422 -0.3080 20 1 9.0638 -12.1940 -1.7465 21 1 10.2185 -12.1868 0.3859 22 1 7.8308 -12.6020 0.3015 23 6 5.8441 -7.6036 -0.0094 24 6 2.9485 -3.3164 -0.0024 25 7 1.9928 -2.4176 -0.0070 26 6 2.2554 -1.1146 -0.0014 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8897 -0.5143 30 1 4.3743 1.4724 -0.0011 31 1 5.6643 -1.2694 -0.0038 32 1 4.0949 -5.5445 -0.0052 33 1 7.8971 -5.0529 -0.0218 34 1 10.5400 -9.4887 -0.2249 35 1 4.8917 -8.1128 -0.0085 36 1 2.6886 -4.3646 -0.0029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747371825.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:35 Heat of formation + Delta-G solvation = 138.602698 kcal Electronic energy + Delta-G solvation = -23754.008112 eV Core-core repulsion = 20048.359588 eV Total energy + Delta-G solvation = -3705.648524 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.108 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.70325 -41.67968 -40.40701 -38.77381 -35.97630 -34.99136 -34.89674 -32.82889 -32.21782 -31.51728 -29.52946 -27.90312 -26.79666 -25.07875 -24.83882 -22.87345 -22.04212 -21.95736 -21.22301 -19.52932 -18.76483 -18.66455 -17.73500 -17.34943 -16.95472 -16.64835 -16.51199 -16.09644 -15.71655 -15.22406 -15.08645 -14.93202 -14.82913 -14.46384 -14.33087 -14.10988 -13.47466 -13.41525 -13.31376 -13.26516 -12.94196 -12.77683 -12.23038 -12.04987 -11.86789 -11.57845 -11.11723 -11.00225 -10.77573 -10.50686 -10.20659 -10.06353 -9.44956 -8.48667 -8.44369 -6.20728 -0.36038 -0.31826 1.07251 1.28900 1.35069 1.42279 1.60079 1.63278 1.92100 2.03098 2.26635 2.46082 2.83077 2.90938 3.04930 3.11695 3.19655 3.49968 3.68055 3.79722 3.98324 4.25551 4.39765 4.41859 4.47382 4.50397 4.65804 4.66937 4.90464 5.04790 5.11172 5.15481 5.32452 5.33959 5.46836 5.66224 5.99572 6.27793 6.34839 6.67599 6.73772 6.77185 7.35610 7.50407 7.71974 8.55155 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.046797 B = 0.002370 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.183700 B =11812.089762 C =12390.417785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.399 5.399 3 N -0.261 5.261 4 C 0.109 3.891 5 C -0.250 4.250 6 C 0.075 3.925 7 C -0.231 4.231 8 C 0.557 3.443 9 O -0.572 6.572 10 N -0.608 5.608 11 C -0.044 4.044 12 C -0.057 4.057 13 N -0.312 5.312 14 N -0.170 5.170 15 C -0.353 4.353 16 H 0.141 0.859 17 C -0.007 4.007 18 N -0.825 5.825 19 Si 1.018 2.982 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.242 1.242 23 C -0.076 4.076 24 C 0.212 3.788 25 N -0.513 5.513 26 C 0.310 3.690 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.243 0.757 31 H 0.161 0.839 32 H 0.419 0.581 33 H 0.170 0.830 34 H 0.276 0.724 35 H 0.191 0.809 36 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.028 13.688 -0.082 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.189 5.189 3 N -0.072 5.072 4 C -0.089 4.089 5 C -0.260 4.260 6 C 0.047 3.953 7 C -0.239 4.239 8 C 0.346 3.654 9 O -0.453 6.453 10 N -0.253 5.253 11 C -0.150 4.150 12 C -0.232 4.232 13 N -0.144 5.144 14 N 0.062 4.938 15 C -0.484 4.484 16 H 0.159 0.841 17 C -0.218 4.218 18 N -0.453 5.453 19 Si 0.837 3.163 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.165 1.165 23 C -0.227 4.227 24 C 0.041 3.959 25 N -0.228 5.228 26 C 0.071 3.929 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.259 0.741 31 H 0.179 0.821 32 H 0.257 0.743 33 H 0.187 0.813 34 H 0.085 0.915 35 H 0.208 0.792 36 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.844 14.185 -0.087 22.795 hybrid contribution 0.663 -0.683 -0.034 0.953 sum -17.181 13.502 -0.121 21.852 Atomic orbital electron populations 1.22103 0.71531 1.05601 1.04403 1.48471 1.07522 0.99627 1.63288 1.76733 1.03342 1.07593 1.19567 1.25793 0.95454 0.92055 0.95609 1.20650 0.93556 0.95884 1.15933 1.21297 0.99973 0.89845 0.84213 1.20407 0.94475 0.93912 1.15099 1.18126 0.88173 0.82086 0.77060 1.90667 1.20917 1.81578 1.52120 1.42237 1.08527 1.03442 1.71052 1.17269 0.88386 0.87825 1.21501 1.24213 0.92507 0.97522 1.09000 1.78147 1.14707 0.94129 1.27389 1.44839 1.02745 1.05692 1.40564 1.20605 0.96319 0.78102 1.53379 0.84118 1.26867 0.94503 1.06196 0.94283 1.70405 1.00068 1.37515 1.37309 0.84591 0.78915 0.73871 0.78920 1.19271 1.20302 1.16508 1.22039 0.91365 0.91654 1.17619 1.23263 0.85910 0.99520 0.87176 1.66753 1.37324 0.98610 1.20135 1.19467 0.89544 0.88637 0.95289 0.89959 0.87787 0.88533 0.74083 0.82131 0.74280 0.81339 0.91464 0.79192 0.78524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.25 11.43 127.77 1.46 2.71 16 2 N -0.40 -7.92 4.03 -366.43 -1.48 -9.40 16 3 N -0.26 -5.04 12.39 -53.08 -0.66 -5.70 16 4 C 0.11 1.77 12.30 86.94 1.07 2.84 16 5 C -0.25 -5.31 6.36 -20.24 -0.13 -5.44 16 6 C 0.08 1.73 9.76 22.92 0.22 1.96 16 7 C -0.23 -5.79 5.89 -20.00 -0.12 -5.91 16 8 C 0.56 18.59 7.74 86.73 0.67 19.26 16 9 O -0.57 -24.01 13.55 -4.02 -0.05 -24.06 16 10 N -0.61 -19.78 5.42 -306.66 -1.66 -21.44 16 11 C -0.04 -1.94 6.90 37.75 0.26 -1.68 16 12 C -0.06 -3.05 10.85 85.43 0.93 -2.12 16 13 N -0.31 -18.63 10.42 -56.46 -0.59 -19.22 16 14 N -0.17 -9.26 3.74 -190.00 -0.71 -9.97 16 15 C -0.35 -18.44 10.24 84.01 0.86 -17.58 16 16 H 0.14 6.33 7.84 -2.91 -0.02 6.31 16 17 C -0.01 -0.36 5.50 84.95 0.47 0.11 16 18 N -0.82 -47.48 11.84 21.66 0.26 -47.22 16 19 Si 1.02 38.32 29.56 68.60 2.03 40.35 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.28 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.24 -8.17 7.11 99.48 0.71 -7.46 16 23 C -0.08 -3.41 11.49 83.38 0.96 -2.45 16 24 C 0.21 4.34 10.69 85.26 0.91 5.25 16 25 N -0.51 -11.44 10.37 -191.95 -1.99 -13.43 16 26 C 0.31 7.06 7.96 134.17 1.07 8.12 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.24 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.16 3.45 7.72 -2.91 -0.02 3.43 16 32 H 0.42 9.41 6.86 -92.71 -0.64 8.77 16 33 H 0.17 9.08 5.91 -2.91 -0.02 9.06 16 34 H 0.28 14.59 8.31 -92.71 -0.77 13.82 16 35 H 0.19 6.51 8.06 -2.91 -0.02 6.49 16 36 H 0.20 2.64 6.39 -2.91 -0.02 2.63 16 Total: -1.00 -80.68 323.29 4.30 -76.38 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.53 Total: 28.64 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 8.63 Total: 5.08 kcal Atomic # 7 Polarization: -119.55 SS G_CDS: -6.83 Total: -126.38 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -80.68 4.30 -76.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747371825.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.982 kcal (2) G-P(sol) polarization free energy of solvation -80.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds