Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47369 * 240.00262 * 3 2 1 5 5 H 1.48494 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00304 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 N 1.40229 * 126.19003 * 269.69459 * 15 14 13 17 17 C 1.30971 * 107.91078 * 179.82086 * 16 15 14 18 18 C 1.41814 * 132.97100 * 180.09992 * 17 16 15 19 19 N 1.30751 * 119.65139 * 180.36308 * 18 17 16 20 20 C 1.33944 * 121.57146 * 359.97438 * 19 18 17 21 21 C 1.34487 * 121.59280 * 359.97438 * 20 19 18 22 22 N 1.37743 * 119.79475 * 0.02562 * 21 20 19 23 23 C 1.34495 * 133.00299 * 179.97438 * 22 21 20 24 24 O 1.21882 * 126.08214 * 0.03485 * 23 22 21 25 25 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 26 26 C 1.38094 * 120.07047 * 359.77109 * 25 13 12 27 27 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 29 29 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 30 30 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 31 31 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 32 32 H 1.07993 * 120.17292 * 0.33415 * 18 17 16 33 33 H 1.07999 * 119.20255 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.09995 * 180.02562 * 21 20 19 35 35 H 1.08006 * 119.96431 * 179.74134 * 25 13 12 36 36 H 1.08005 * 120.03539 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 7 3.8386 -8.5429 -1.5892 17 6 4.3989 -8.7762 -2.7498 18 6 4.0435 -9.6028 -3.8460 19 7 4.8147 -9.6449 -4.9010 20 6 5.9403 -8.9228 -4.9762 21 6 6.3306 -8.1196 -3.9706 22 7 5.5636 -8.0289 -2.8301 23 6 5.6956 -7.3290 -1.6892 24 8 6.6059 -6.5658 -1.4165 25 6 2.1872 -5.8886 0.3346 26 6 1.4365 -4.7345 0.2274 27 1 -0.4850 0.8401 0.0004 28 1 3.9526 -2.4846 -0.0025 29 1 5.2809 -4.5483 0.1790 30 1 5.3325 -6.8574 0.9266 31 1 3.8363 -7.8163 1.0271 32 1 3.1409 -10.1946 -3.8093 33 1 6.5486 -8.9864 -5.8663 34 1 7.2426 -7.5476 -4.0571 35 1 1.6952 -6.8454 0.4293 36 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760510856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = 99.789094 kcal Electronic energy + Delta-G solvation = -24304.696418 eV Core-core repulsion = 20565.072059 eV Total energy + Delta-G solvation = -3739.624359 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.33655 -39.54027 -39.01427 -37.36148 -36.86928 -34.91220 -33.11176 -32.31397 -30.40409 -30.22124 -29.50253 -27.04206 -25.49691 -24.39703 -23.79379 -22.28321 -22.04392 -20.63139 -19.04863 -18.44513 -18.06460 -17.40757 -16.98936 -16.59435 -15.91008 -15.73562 -15.05256 -14.91955 -14.69039 -14.52895 -14.06110 -13.68990 -13.63389 -13.52779 -12.95979 -12.75378 -12.53015 -12.28037 -12.09452 -11.84898 -11.66170 -11.39688 -11.11561 -10.92769 -10.74837 -10.73621 -10.50613 -10.27165 -9.68722 -9.43365 -8.92755 -8.27774 -8.08997 -7.35958 -6.54515 -4.13030 0.00099 1.11633 1.21349 2.13921 2.15538 2.37934 2.71230 3.08812 3.09743 3.10171 3.12573 3.74281 3.86028 3.89801 3.98845 4.48117 4.60916 4.79476 4.93134 5.00582 5.13074 5.21871 5.28947 5.41197 5.45207 5.62127 5.67372 5.75692 5.98209 6.12547 6.17867 6.32511 6.58749 6.79802 6.94613 7.07515 7.14306 7.25756 7.33623 7.35116 7.69044 7.71520 7.90428 8.90611 9.58079 10.62769 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.003003 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.310152 B = 9323.185144 C = 9569.878519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.171 6.171 10 C 0.165 3.835 11 C -0.240 4.240 12 C -0.042 4.042 13 C -0.231 4.231 14 C 0.212 3.788 15 N -0.411 5.411 16 N -0.236 5.236 17 C 0.217 3.783 18 C 0.184 3.816 19 N -0.426 5.426 20 C -0.020 4.020 21 C 0.097 3.903 22 N -0.477 5.477 23 C 0.642 3.358 24 O -0.534 6.534 25 C -0.043 4.043 26 C -0.198 4.198 27 H 0.272 0.728 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.196 0.804 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.116 0.884 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -17.950 -5.666 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.073 6.073 10 C 0.109 3.891 11 C -0.259 4.259 12 C -0.061 4.061 13 C -0.233 4.233 14 C 0.095 3.905 15 N -0.231 5.231 16 N -0.064 5.064 17 C -0.053 4.053 18 C -0.010 4.010 19 N -0.136 5.136 20 C -0.155 4.155 21 C -0.025 4.025 22 N -0.194 5.194 23 C 0.343 3.657 24 O -0.406 6.406 25 C -0.062 4.062 26 C -0.218 4.218 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.213 0.787 33 H 0.198 0.802 34 H 0.194 0.806 35 H 0.134 0.866 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.338 -17.652 -5.414 20.691 hybrid contribution 1.339 1.709 0.156 2.177 sum 10.677 -15.943 -5.258 19.895 Atomic orbital electron populations 1.70027 1.06021 1.28046 1.45142 1.25324 0.95871 0.98949 0.96241 0.85757 0.78740 0.79515 0.79331 1.19408 1.20138 1.19346 1.21338 0.91905 0.80720 1.53072 0.88938 1.83973 1.34546 1.11587 1.77179 1.19461 0.90292 0.88058 0.91244 1.21145 0.93760 0.98943 1.12044 1.20717 0.98684 0.91691 0.95039 1.19311 0.93844 0.93301 1.16834 1.20447 1.00842 0.93486 0.75765 1.49784 1.18503 1.37877 1.16958 1.77578 1.16546 1.09643 1.02655 1.22739 0.87170 0.98079 0.97319 1.23021 0.99555 0.94267 0.84146 1.68073 1.03823 1.18567 1.23150 1.21988 0.96261 0.97722 0.99496 1.22666 0.96899 0.98984 0.83939 1.43755 1.21695 1.38039 1.15956 1.16553 0.85415 0.83233 0.80522 1.91134 1.35469 1.38485 1.75501 1.20515 0.92525 0.96932 0.96200 1.20203 0.99693 0.90228 1.11651 0.91769 0.85399 0.87101 0.88215 0.87993 0.78684 0.80242 0.80588 0.86634 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 20.41 29.55 -169.99 -5.02 15.38 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 7 C -0.39 -10.99 9.49 30.89 0.29 -10.70 16 8 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 9 O -0.17 -4.85 9.76 0.04 0.00 -4.85 16 10 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 11 C -0.24 -5.31 9.17 -39.40 -0.36 -5.67 16 12 C -0.04 -0.81 9.69 -39.61 -0.38 -1.20 16 13 C -0.23 -3.95 5.47 -104.57 -0.57 -4.52 16 14 C 0.21 2.90 6.49 -5.19 -0.03 2.87 16 15 N -0.41 -6.05 3.60 -66.39 -0.24 -6.29 16 16 N -0.24 -3.14 12.61 31.38 0.40 -2.74 16 17 C 0.22 2.52 7.92 -155.56 -1.23 1.29 16 18 C 0.18 1.55 11.37 -16.65 -0.19 1.36 16 19 N -0.43 -3.74 10.41 -12.99 -0.14 -3.88 16 20 C -0.02 -0.15 11.04 -17.96 -0.20 -0.35 16 21 C 0.10 0.89 11.01 -16.22 -0.18 0.71 16 22 N -0.48 -6.06 2.95 -66.43 -0.20 -6.25 16 23 C 0.64 10.06 8.73 -87.04 -0.76 9.30 16 24 O -0.53 -9.66 17.88 5.03 0.09 -9.57 16 25 C -0.04 -0.75 9.69 -39.61 -0.38 -1.14 16 26 C -0.20 -4.15 9.99 -39.40 -0.39 -4.54 16 27 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 29 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 30 H 0.10 1.27 8.04 -51.93 -0.42 0.85 16 31 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 32 H 0.20 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.12 1.69 8.06 -52.48 -0.42 1.27 16 36 H 0.12 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -34.34 327.58 -7.24 -41.58 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.08 Total: 3.71 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -4.75 Total: -7.84 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: 0.58 Total: -43.34 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.09 Total: -14.42 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.34 -7.24 -41.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760510856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.366 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds