Wall clock time and date at job start Fri Apr 10 2020 18:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31550 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48499 * 109.47369 * 240.00262 * 3 2 1 5 5 H 1.48494 * 109.47142 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47275 * 120.00304 * 3 2 1 7 7 C 1.38654 * 120.00182 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 179.97438 * 7 2 1 9 9 O 1.34834 * 119.99707 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00013 * 185.05824 * 9 7 2 11 11 C 1.38874 * 120.06890 * 354.46142 * 10 9 7 12 12 C 1.38104 * 119.93265 * 180.29770 * 11 10 9 13 13 C 1.38305 * 120.06272 * 359.47314 * 12 11 10 14 14 C 1.50701 * 119.92910 * 180.25358 * 13 12 11 15 15 N 1.46498 * 109.47235 * 270.25475 * 14 13 12 16 16 N 1.40229 * 126.19003 * 269.69459 * 15 14 13 17 17 C 1.30971 * 107.91078 * 179.82086 * 16 15 14 18 18 C 1.41814 * 132.97100 * 180.09992 * 17 16 15 19 19 N 1.30751 * 119.65139 * 180.36308 * 18 17 16 20 20 C 1.33944 * 121.57146 * 359.97438 * 19 18 17 21 21 C 1.34487 * 121.59280 * 359.97438 * 20 19 18 22 22 N 1.37743 * 119.79475 * 0.02562 * 21 20 19 23 23 C 1.34495 * 133.00299 * 179.97438 * 22 21 20 24 24 O 1.21882 * 126.08214 * 0.03485 * 23 22 21 25 25 C 1.38302 * 120.13938 * 0.50581 * 13 12 11 26 26 C 1.38094 * 120.07047 * 359.77109 * 25 13 12 27 27 H 0.97006 * 119.99724 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.03972 * 0.02808 * 11 10 9 29 29 H 1.07990 * 119.96890 * 179.72053 * 12 11 10 30 30 H 1.09006 * 109.46946 * 30.25429 * 14 13 12 31 31 H 1.08998 * 109.47253 * 150.25176 * 14 13 12 32 32 H 1.07993 * 120.17292 * 0.33415 * 18 17 16 33 33 H 1.07999 * 119.20255 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.09995 * 180.02562 * 21 20 19 35 35 H 1.08006 * 119.96431 * 179.74134 * 25 13 12 36 36 H 1.08005 * 120.03539 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 0.1056 11 6 3.4570 -3.4395 0.0920 12 6 4.2023 -4.5978 0.1940 13 6 3.5685 -5.8205 0.3204 14 6 4.3848 -7.0820 0.4372 15 7 4.6417 -7.6229 -0.8998 16 7 3.8386 -8.5429 -1.5892 17 6 4.3989 -8.7762 -2.7498 18 6 4.0435 -9.6028 -3.8460 19 7 4.8147 -9.6449 -4.9010 20 6 5.9403 -8.9228 -4.9762 21 6 6.3306 -8.1196 -3.9706 22 7 5.5636 -8.0289 -2.8301 23 6 5.6956 -7.3290 -1.6892 24 8 6.6059 -6.5658 -1.4165 25 6 2.1872 -5.8886 0.3346 26 6 1.4365 -4.7345 0.2274 27 1 -0.4850 0.8401 0.0004 28 1 3.9526 -2.4846 -0.0025 29 1 5.2809 -4.5483 0.1790 30 1 5.3325 -6.8574 0.9266 31 1 3.8363 -7.8163 1.0271 32 1 3.1409 -10.1946 -3.8093 33 1 6.5486 -8.9864 -5.8663 34 1 7.2426 -7.5476 -4.0571 35 1 1.6952 -6.8454 0.4293 36 1 0.3578 -4.7884 0.2381 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760510856.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:39 Heat of formation + Delta-G solvation = 77.645635 kcal Electronic energy + Delta-G solvation = -24305.656630 eV Core-core repulsion = 20565.072059 eV Total energy + Delta-G solvation = -3740.584572 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.101 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.29794 -40.95150 -40.23804 -38.62248 -38.37890 -35.91993 -34.50600 -33.91707 -31.92433 -31.54276 -30.47941 -28.34523 -27.28848 -25.51549 -24.67336 -23.70044 -23.35701 -22.14854 -20.02154 -19.87653 -19.35161 -18.89954 -18.35300 -17.55007 -17.00179 -16.56491 -16.46310 -16.43109 -16.16795 -15.72129 -15.57704 -15.31569 -14.97922 -14.60224 -14.35845 -14.18005 -13.73775 -13.59597 -13.28870 -13.16445 -13.03702 -12.88215 -12.56775 -12.43514 -12.40220 -12.18234 -11.83017 -11.28455 -11.07349 -10.86944 -10.70042 -9.89546 -9.13320 -8.98442 -8.53990 -6.22895 -0.76302 0.09094 0.30271 0.50272 0.73398 1.26523 1.31374 1.41517 1.47520 1.73468 2.12861 2.35998 2.72287 2.85198 3.08110 3.21648 3.26623 3.40770 3.82148 3.82777 3.92004 4.07169 4.13670 4.19619 4.39995 4.52693 4.53499 4.68723 4.70865 4.80555 4.94571 5.04409 5.07821 5.16918 5.35690 5.44557 5.60996 5.63190 5.94845 6.07652 6.13721 6.55479 6.62844 6.90111 7.67122 8.68342 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.020048 B = 0.003003 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.310152 B = 9323.185144 C = 9569.878519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.018 4.018 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.420 4.420 8 H 0.099 0.901 9 O -0.224 6.224 10 C 0.128 3.872 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.202 4.202 14 C 0.211 3.789 15 N -0.417 5.417 16 N -0.253 5.253 17 C 0.221 3.779 18 C 0.191 3.809 19 N -0.433 5.433 20 C 0.001 3.999 21 C 0.067 3.933 22 N -0.481 5.481 23 C 0.629 3.371 24 O -0.570 6.570 25 C -0.030 4.030 26 C -0.206 4.206 27 H 0.275 0.725 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.138 0.862 32 H 0.232 0.768 33 H 0.216 0.784 34 H 0.192 0.808 35 H 0.158 0.842 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.428 -20.854 -6.652 24.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.216 4.216 3 Si 0.836 3.164 4 H -0.184 1.184 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.496 4.496 8 H 0.116 0.884 9 O -0.130 6.130 10 C 0.076 3.924 11 C -0.270 4.270 12 C -0.065 4.065 13 C -0.204 4.204 14 C 0.094 3.906 15 N -0.236 5.236 16 N -0.082 5.082 17 C -0.048 4.048 18 C -0.002 4.002 19 N -0.143 5.143 20 C -0.133 4.133 21 C -0.053 4.053 22 N -0.198 5.198 23 C 0.329 3.671 24 O -0.445 6.445 25 C -0.049 4.049 26 C -0.225 4.225 27 H 0.084 0.916 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.156 0.844 32 H 0.249 0.751 33 H 0.233 0.767 34 H 0.209 0.791 35 H 0.175 0.825 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.912 -20.643 -6.435 24.220 hybrid contribution 1.007 2.112 0.335 2.363 sum 11.919 -18.531 -6.100 22.862 Atomic orbital electron populations 1.70160 1.07947 1.29115 1.48024 1.26577 0.96864 1.02651 0.95501 0.84673 0.77492 0.74320 0.79911 1.18376 1.19178 1.18130 1.21778 0.92477 0.81454 1.53858 0.88363 1.83942 1.35894 1.12596 1.80567 1.19993 0.91295 0.88204 0.92881 1.21198 0.93350 0.99752 1.12653 1.20926 0.99295 0.91570 0.94752 1.19791 0.94192 0.94211 1.12190 1.20578 1.01400 0.92490 0.76179 1.49631 1.18602 1.38178 1.17164 1.77585 1.16757 1.10344 1.03483 1.23392 0.86420 0.97498 0.97489 1.23727 1.00369 0.93361 0.82704 1.68199 1.04288 1.18792 1.23059 1.22611 0.95572 0.95419 0.99702 1.23147 0.97888 1.00801 0.83476 1.43806 1.22364 1.37567 1.16038 1.16743 0.85434 0.83447 0.81454 1.91095 1.36769 1.40166 1.76496 1.20937 0.92608 0.97329 0.93998 1.20507 1.00336 0.90243 1.11447 0.91571 0.86587 0.85772 0.87052 0.84396 0.75140 0.76720 0.79062 0.82461 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.08 13.67 21.61 0.30 -55.78 16 2 C -0.02 -1.00 5.49 84.83 0.47 -0.53 16 3 Si 1.02 43.19 29.55 68.60 2.03 45.22 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 7 C -0.42 -24.80 9.49 67.92 0.64 -24.16 16 8 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 9 O -0.22 -13.60 9.76 -22.77 -0.22 -13.82 16 10 C 0.13 6.44 6.65 22.58 0.15 6.59 16 11 C -0.25 -11.45 9.17 22.39 0.21 -11.24 16 12 C -0.05 -1.76 9.69 22.25 0.22 -1.54 16 13 C -0.20 -6.45 5.47 -19.83 -0.11 -6.56 16 14 C 0.21 5.09 6.49 85.63 0.56 5.64 16 15 N -0.42 -11.20 3.60 -482.01 -1.74 -12.94 16 16 N -0.25 -5.96 12.61 -54.63 -0.69 -6.65 16 17 C 0.22 4.52 7.92 134.28 1.06 5.58 16 18 C 0.19 2.52 11.37 85.74 0.97 3.49 16 19 N -0.43 -5.97 10.41 -195.02 -2.03 -8.00 16 20 C 0.00 0.01 11.04 83.51 0.92 0.93 16 21 C 0.07 1.06 11.01 82.91 0.91 1.98 16 22 N -0.48 -11.22 2.95 -482.38 -1.42 -12.65 16 23 C 0.63 18.73 8.73 179.10 1.56 20.29 16 24 O -0.57 -20.22 17.88 -4.93 -0.09 -20.31 16 25 C -0.03 -0.99 9.69 22.25 0.22 -0.78 16 26 C -0.21 -8.67 9.99 22.39 0.22 -8.45 16 27 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 28 H 0.12 5.47 5.64 -2.91 -0.02 5.45 16 29 H 0.12 4.36 8.06 -2.92 -0.02 4.33 16 30 H 0.11 2.49 8.04 -2.38 -0.02 2.47 16 31 H 0.14 2.39 8.08 -2.39 -0.02 2.37 16 32 H 0.23 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.22 0.87 8.06 -2.91 -0.02 0.84 16 34 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 35 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 36 H 0.12 4.97 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -80.60 327.58 5.28 -75.33 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 1.14 Total: 18.36 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 8.00 Total: -8.75 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -5.58 Total: -96.02 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.31 Total: -34.14 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -80.60 5.28 -75.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760510856.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.974 kcal (2) G-P(sol) polarization free energy of solvation -80.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds