Wall clock time and date at job start Fri Apr 10 2020 18:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36051 * 117.00009 * 2 1 4 4 C 1.37889 * 119.97271 * 359.97438 * 3 2 1 5 5 C 1.39984 * 119.88844 * 179.97438 * 4 3 2 6 6 C 1.47219 * 120.08143 * 179.97438 * 5 4 3 7 7 O 1.21544 * 119.99808 * 179.72986 * 6 5 4 8 8 O 1.34784 * 120.00123 * 0.02562 * 6 5 4 9 9 C 1.45199 * 117.00054 * 179.72388 * 8 6 5 10 10 C 1.50697 * 109.46937 * 179.97438 * 9 8 6 11 11 O 1.21293 * 120.00075 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.37091 * 120.00465 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99942 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00652 * 180.02562 * 13 12 10 16 16 N 1.31417 * 119.99528 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00381 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46978 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47126 * 120.00025 * 17 15 13 20 20 H 1.48505 * 109.46781 * 239.99849 * 17 15 13 21 21 C 1.40062 * 119.83474 * 0.26097 * 5 4 3 22 22 F 1.35099 * 120.02692 * 179.72668 * 21 5 4 23 23 C 1.37996 * 119.93930 * 359.46249 * 21 5 4 24 24 C 1.38950 * 120.10977 * 0.53586 * 23 21 5 25 25 N 1.39255 * 119.91673 * 179.76442 * 24 23 21 26 26 H 1.08997 * 109.46740 * 300.00229 * 1 2 3 27 27 H 1.08998 * 109.46699 * 60.00022 * 1 2 3 28 28 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.05842 * 0.02769 * 4 3 2 30 30 H 1.08997 * 109.46967 * 299.99918 * 9 8 6 31 31 H 1.09002 * 109.46640 * 60.00121 * 9 8 6 32 32 H 0.97000 * 119.99896 * 0.02562 * 12 10 9 33 33 H 0.97006 * 119.99795 * 179.97438 * 16 15 13 34 34 H 1.08004 * 119.94518 * 180.27471 * 23 21 5 35 35 H 0.96997 * 120.00022 * 179.97438 * 25 24 23 36 36 H 0.96999 * 119.99465 * 359.97289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2952 2.3683 -0.0005 5 6 1.9325 3.6146 0.0000 6 6 1.1343 4.8516 -0.0011 7 8 1.6892 5.9330 0.0043 8 8 -0.2119 4.7850 -0.0022 9 6 -0.9342 6.0446 0.0030 10 6 -2.4166 5.7735 0.0003 11 8 -2.8242 4.6311 -0.0049 12 7 -3.2895 6.8004 0.0048 13 6 -4.6381 6.5538 0.0018 14 1 -5.0011 5.5366 -0.0036 15 6 -5.5380 7.6125 0.0059 16 7 -5.0963 8.8502 0.0120 17 14 -7.3755 7.2765 0.0026 18 1 -7.6105 5.8102 -0.0051 19 1 -7.9895 7.8705 1.2173 20 1 -7.9871 7.8818 -1.2077 21 6 3.3315 3.6818 -0.0044 22 9 3.9506 4.8826 -0.0095 23 6 4.0769 2.5205 0.0019 24 6 3.4418 1.2846 0.0014 25 7 4.1978 0.1152 0.0028 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2166 2.3124 -0.0005 30 1 -0.6698 6.6114 0.8956 31 1 -0.6687 6.6192 -0.8844 32 1 -2.9635 7.7139 0.0093 33 1 -5.7246 9.5893 0.0145 34 1 5.1557 2.5722 0.0029 35 1 3.7558 -0.7482 0.0029 36 1 5.1666 0.1641 0.0038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767719152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:42 Heat of formation + Delta-G solvation = -172.152204 kcal Electronic energy + Delta-G solvation = -25016.693740 eV Core-core repulsion = 20802.215145 eV Total energy + Delta-G solvation = -4214.478595 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.93382 -40.65028 -39.85228 -38.12015 -37.49399 -35.94897 -34.85991 -33.98745 -31.37628 -30.52613 -29.59516 -28.19364 -27.38782 -24.75683 -23.63665 -22.72987 -21.03556 -19.55293 -18.67470 -18.11516 -17.89267 -17.81847 -16.98608 -16.39009 -16.25210 -15.91958 -15.75706 -15.58235 -15.43639 -15.10436 -14.60877 -14.39442 -14.05132 -13.92657 -13.65400 -13.15498 -12.92636 -12.81116 -12.28050 -12.12554 -11.94752 -11.65159 -11.62036 -11.34968 -11.15029 -10.74696 -10.38996 -10.35121 -10.34400 -10.26709 -9.61007 -8.87744 -8.51196 -8.07592 -7.74664 -6.49326 -3.91341 0.56765 0.96909 2.57634 2.72888 2.95059 3.11995 3.23954 3.30471 3.31870 3.47921 3.75299 4.08893 4.11887 4.39083 4.58188 4.84745 5.01568 5.05551 5.12634 5.12672 5.16366 5.25343 5.46121 5.48305 5.66015 5.74499 5.75338 5.90348 6.08348 6.31542 6.65848 6.70022 7.16528 7.28411 7.48375 7.89626 8.00148 8.49355 9.07679 9.40470 9.90099 10.68018 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002933 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.139052 B = 9544.032690 C =10849.709223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.321 6.321 3 C 0.028 3.972 4 C -0.074 4.074 5 C -0.183 4.183 6 C 0.507 3.493 7 O -0.505 6.505 8 O -0.324 6.324 9 C 0.062 3.938 10 C 0.440 3.560 11 O -0.578 6.578 12 N -0.553 5.553 13 C -0.302 4.302 14 H 0.106 0.894 15 C 0.024 3.976 16 N -0.897 5.897 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.186 3.814 22 F -0.114 7.114 23 C -0.228 4.228 24 C 0.260 3.740 25 N -0.856 5.856 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.159 0.841 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.395 0.605 33 H 0.273 0.727 34 H 0.149 0.851 35 H 0.410 0.590 36 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.715 -15.559 -0.008 23.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.236 6.236 3 C -0.020 4.020 4 C -0.094 4.094 5 C -0.187 4.187 6 C 0.352 3.648 7 O -0.394 6.394 8 O -0.238 6.238 9 C -0.016 4.016 10 C 0.225 3.775 11 O -0.462 6.462 12 N -0.190 5.190 13 C -0.431 4.431 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.537 5.537 17 Si 0.760 3.240 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C 0.166 3.834 22 F -0.092 7.092 23 C -0.252 4.252 24 C 0.152 3.848 25 N -0.394 5.394 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.177 0.823 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.229 0.771 33 H 0.083 0.917 34 H 0.167 0.833 35 H 0.239 0.761 36 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 17.537 -15.944 -0.008 23.701 hybrid contribution -0.611 0.818 -0.002 1.021 sum 16.926 -15.126 -0.010 22.700 Atomic orbital electron populations 1.23136 0.77225 1.04120 1.02455 1.85930 1.22114 1.25431 1.90083 1.18206 0.90056 0.85434 1.08315 1.21335 1.01536 0.89506 0.97055 1.18645 0.90818 0.92084 1.17176 1.20732 0.81668 0.88820 0.73558 1.90884 1.72521 1.29959 1.46086 1.86563 1.18153 1.35618 1.83497 1.22749 0.91819 0.83369 1.03649 1.19308 0.85864 0.86494 0.85818 1.90537 1.79070 1.21213 1.55406 1.41710 1.06070 1.07439 1.63789 1.19765 0.80071 0.95154 1.48073 0.87576 1.25319 1.00974 0.94584 0.96943 1.69629 1.36030 0.98346 1.49723 0.85746 0.81599 0.78867 0.77804 1.19104 1.20626 1.20632 1.17142 0.88377 0.80885 0.97036 1.91593 1.82326 1.42569 1.92707 1.20142 1.00571 0.88783 1.15746 1.16911 0.87448 0.87375 0.93104 1.42306 1.08723 1.05693 1.82650 0.92005 0.91996 0.88076 0.82319 0.89447 0.89455 0.77119 0.91675 0.83346 0.76060 0.76829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.16 9.72 -19.90 -0.19 -3.35 16 3 C 0.03 0.31 6.70 -39.17 -0.26 0.05 16 4 C -0.07 -0.96 8.59 -39.06 -0.34 -1.30 16 5 C -0.18 -2.71 5.88 -104.91 -0.62 -3.32 16 6 C 0.51 9.10 7.88 34.38 0.27 9.37 16 7 O -0.50 -9.96 15.11 -19.30 -0.29 -10.26 16 8 O -0.32 -6.28 8.99 -47.41 -0.43 -6.71 16 9 C 0.06 1.22 5.95 36.00 0.21 1.43 16 10 C 0.44 10.64 7.86 -10.99 -0.09 10.56 16 11 O -0.58 -15.81 16.08 -14.11 -0.23 -16.04 16 12 N -0.55 -14.03 5.29 -10.96 -0.06 -14.09 16 13 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 14 H 0.11 3.04 7.16 -52.48 -0.38 2.67 16 15 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 16 N -0.90 -24.16 13.05 55.50 0.72 -23.43 16 17 Si 0.93 20.66 29.55 -169.99 -5.02 15.63 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.19 2.47 7.28 -38.99 -0.28 2.19 16 22 F -0.11 -1.70 15.53 2.25 0.03 -1.67 16 23 C -0.23 -2.23 9.84 -39.41 -0.39 -2.62 16 24 C 0.26 2.42 6.76 -83.68 -0.57 1.85 16 25 N -0.86 -4.98 9.05 32.49 0.29 -4.69 16 26 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 27 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.16 2.10 5.82 -52.49 -0.31 1.80 16 30 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.40 9.56 7.90 -40.82 -0.32 9.24 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.41 2.12 8.16 -40.82 -0.33 1.79 16 36 H 0.40 1.34 8.83 -40.82 -0.36 0.98 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -33.73 329.40 -4.82 -38.56 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -3.32 Total: 9.58 kcal Atomic # 6 Polarization: 12.81 SS G_CDS: -1.30 Total: 11.51 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 0.96 Total: -42.21 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -1.14 Total: -36.35 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.03 Total: -1.67 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.73 -4.82 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767719152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.597 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds