Wall clock time and date at job start Fri Apr 10 2020 18:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.36051 * 117.00009 * 2 1 4 4 C 1.37889 * 119.97271 * 359.97438 * 3 2 1 5 5 C 1.39984 * 119.88844 * 179.97438 * 4 3 2 6 6 C 1.47219 * 120.08143 * 179.97438 * 5 4 3 7 7 O 1.21544 * 119.99808 * 179.72986 * 6 5 4 8 8 O 1.34784 * 120.00123 * 0.02562 * 6 5 4 9 9 C 1.45199 * 117.00054 * 179.72388 * 8 6 5 10 10 C 1.50697 * 109.46937 * 179.97438 * 9 8 6 11 11 O 1.21293 * 120.00075 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00039 * 179.97438 * 10 9 8 13 13 C 1.37091 * 120.00465 * 179.97438 * 12 10 9 14 14 H 1.08006 * 119.99942 * 0.02562 * 13 12 10 15 15 C 1.38949 * 120.00652 * 180.02562 * 13 12 10 16 16 N 1.31417 * 119.99528 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00381 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46978 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47126 * 120.00025 * 17 15 13 20 20 H 1.48505 * 109.46781 * 239.99849 * 17 15 13 21 21 C 1.40062 * 119.83474 * 0.26097 * 5 4 3 22 22 F 1.35099 * 120.02692 * 179.72668 * 21 5 4 23 23 C 1.37996 * 119.93930 * 359.46249 * 21 5 4 24 24 C 1.38950 * 120.10977 * 0.53586 * 23 21 5 25 25 N 1.39255 * 119.91673 * 179.76442 * 24 23 21 26 26 H 1.08997 * 109.46740 * 300.00229 * 1 2 3 27 27 H 1.08998 * 109.46699 * 60.00022 * 1 2 3 28 28 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.05842 * 0.02769 * 4 3 2 30 30 H 1.08997 * 109.46967 * 299.99918 * 9 8 6 31 31 H 1.09002 * 109.46640 * 60.00121 * 9 8 6 32 32 H 0.97000 * 119.99896 * 0.02562 * 12 10 9 33 33 H 0.97006 * 119.99795 * 179.97438 * 16 15 13 34 34 H 1.08004 * 119.94518 * 180.27471 * 23 21 5 35 35 H 0.96997 * 120.00022 * 179.97438 * 25 24 23 36 36 H 0.96999 * 119.99465 * 359.97289 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2952 2.3683 -0.0005 5 6 1.9325 3.6146 0.0000 6 6 1.1343 4.8516 -0.0011 7 8 1.6892 5.9330 0.0043 8 8 -0.2119 4.7850 -0.0022 9 6 -0.9342 6.0446 0.0030 10 6 -2.4166 5.7735 0.0003 11 8 -2.8242 4.6311 -0.0049 12 7 -3.2895 6.8004 0.0048 13 6 -4.6381 6.5538 0.0018 14 1 -5.0011 5.5366 -0.0036 15 6 -5.5380 7.6125 0.0059 16 7 -5.0963 8.8502 0.0120 17 14 -7.3755 7.2765 0.0026 18 1 -7.6105 5.8102 -0.0051 19 1 -7.9895 7.8705 1.2173 20 1 -7.9871 7.8818 -1.2077 21 6 3.3315 3.6818 -0.0044 22 9 3.9506 4.8826 -0.0095 23 6 4.0769 2.5205 0.0019 24 6 3.4418 1.2846 0.0014 25 7 4.1978 0.1152 0.0028 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2166 2.3124 -0.0005 30 1 -0.6698 6.6114 0.8956 31 1 -0.6687 6.6192 -0.8844 32 1 -2.9635 7.7139 0.0093 33 1 -5.7246 9.5893 0.0145 34 1 5.1557 2.5722 0.0029 35 1 3.7558 -0.7482 0.0029 36 1 5.1666 0.1641 0.0038 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767719152.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:41 Heat of formation + Delta-G solvation = -196.417014 kcal Electronic energy + Delta-G solvation = -25017.745941 eV Core-core repulsion = 20802.215145 eV Total energy + Delta-G solvation = -4215.530796 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.100 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.99324 -41.77194 -41.04690 -40.00135 -38.35119 -37.44730 -36.03522 -35.68956 -33.42402 -31.46026 -30.60674 -29.67095 -28.21865 -26.65338 -24.74381 -23.64956 -22.21075 -21.44352 -20.08319 -19.74223 -18.89704 -18.75001 -18.15476 -17.79048 -17.69230 -17.19427 -16.89186 -16.59578 -16.46184 -16.43943 -16.02441 -15.79316 -15.65997 -15.28707 -14.87709 -14.37946 -14.06971 -13.86057 -13.80546 -13.58760 -13.53564 -12.98433 -12.94649 -12.51885 -12.46584 -12.10371 -12.07650 -11.89612 -11.69463 -11.66241 -11.58780 -10.52373 -10.12594 -9.73469 -8.53366 -8.52778 -6.03560 -0.46123 0.08742 1.30149 1.34118 1.37936 1.44486 1.58994 1.85456 2.18885 2.29358 2.48598 2.60243 3.00582 3.12737 3.17269 3.50807 3.60912 3.94352 4.08032 4.13402 4.19989 4.24508 4.37093 4.41931 4.43350 4.66326 4.79174 4.84424 4.94892 5.22727 5.36803 5.42823 5.88199 6.01462 6.40529 6.44093 6.59293 6.83907 7.01884 7.38671 7.91381 8.64652 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.002933 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.139052 B = 9544.032690 C =10849.709223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.317 6.317 3 C 0.026 3.974 4 C -0.081 4.081 5 C -0.215 4.215 6 C 0.506 3.494 7 O -0.532 6.532 8 O -0.337 6.337 9 C 0.071 3.929 10 C 0.440 3.560 11 O -0.614 6.614 12 N -0.558 5.558 13 C -0.336 4.336 14 H 0.086 0.914 15 C -0.010 4.010 16 N -0.917 5.917 17 Si 1.000 3.000 18 H -0.269 1.269 19 H -0.270 1.270 20 H -0.270 1.270 21 C 0.177 3.823 22 F -0.128 7.128 23 C -0.215 4.215 24 C 0.279 3.721 25 N -0.831 5.831 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.129 0.871 29 H 0.147 0.853 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.400 0.600 33 H 0.281 0.719 34 H 0.184 0.816 35 H 0.417 0.583 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.938 -17.209 -0.003 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.231 6.231 3 C -0.023 4.023 4 C -0.101 4.101 5 C -0.219 4.219 6 C 0.354 3.646 7 O -0.423 6.423 8 O -0.252 6.252 9 C -0.007 4.007 10 C 0.226 3.774 11 O -0.501 6.501 12 N -0.195 5.195 13 C -0.465 4.465 14 H 0.104 0.896 15 C -0.211 4.211 16 N -0.557 5.557 17 Si 0.822 3.178 18 H -0.194 1.194 19 H -0.195 1.195 20 H -0.195 1.195 21 C 0.156 3.844 22 F -0.106 7.106 23 C -0.239 4.239 24 C 0.167 3.833 25 N -0.369 5.369 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.164 0.836 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.234 0.766 33 H 0.090 0.910 34 H 0.201 0.799 35 H 0.248 0.752 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 18.811 -17.620 -0.004 25.775 hybrid contribution -0.874 1.160 -0.003 1.452 sum 17.937 -16.461 -0.007 24.345 Atomic orbital electron populations 1.23290 0.76576 1.05731 1.01778 1.85936 1.22732 1.24604 1.89822 1.18303 0.90847 0.85145 1.07987 1.21179 1.01135 0.89760 0.98060 1.18571 0.91301 0.91151 1.20916 1.21306 0.80859 0.89838 0.72621 1.90851 1.72543 1.31073 1.47846 1.86567 1.19380 1.35287 1.83964 1.22545 0.88824 0.84006 1.05291 1.19972 0.87581 0.85646 0.84171 1.90503 1.80246 1.22608 1.56735 1.41744 1.05860 1.07903 1.63995 1.19774 0.81430 0.94803 1.50518 0.89578 1.26166 1.05165 0.94112 0.95654 1.69692 1.37734 0.98998 1.49248 0.84776 0.76012 0.78560 0.78409 1.19357 1.19477 1.19487 1.17399 0.87947 0.81412 0.97647 1.91553 1.82401 1.43734 1.92951 1.20379 1.01939 0.87407 1.14207 1.16949 0.86992 0.88369 0.91025 1.42358 1.09657 1.04869 1.80013 0.92742 0.92736 0.85285 0.83572 0.87725 0.87737 0.76613 0.90968 0.79908 0.75164 0.74802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.32 -5.64 9.72 -94.13 -0.91 -6.56 16 3 C 0.03 0.53 6.70 22.54 0.15 0.68 16 4 C -0.08 -2.12 8.59 22.61 0.19 -1.93 16 5 C -0.21 -6.48 5.88 -20.05 -0.12 -6.60 16 6 C 0.51 18.81 7.88 70.18 0.55 19.37 16 7 O -0.53 -21.59 15.11 19.69 0.30 -21.29 16 8 O -0.34 -13.58 8.99 -50.57 -0.45 -14.04 16 9 C 0.07 2.85 5.95 71.23 0.42 3.27 16 10 C 0.44 21.95 7.86 87.66 0.69 22.64 16 11 O -0.61 -34.91 16.08 15.73 0.25 -34.66 16 12 N -0.56 -29.10 5.29 -306.99 -1.62 -30.72 16 13 C -0.34 -18.98 9.68 84.04 0.81 -18.16 16 14 H 0.09 5.12 7.16 -2.91 -0.02 5.10 16 15 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 16 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 17 Si 1.00 42.12 29.55 68.60 2.03 44.15 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 21 C 0.18 4.57 7.28 22.66 0.16 4.73 16 22 F -0.13 -3.82 15.53 44.97 0.70 -3.12 16 23 C -0.22 -3.62 9.84 22.38 0.22 -3.40 16 24 C 0.28 4.35 6.76 38.48 0.26 4.61 16 25 N -0.83 -6.24 9.05 -51.12 -0.46 -6.70 16 26 H 0.05 0.97 7.66 -2.39 -0.02 0.95 16 27 H 0.05 0.97 7.66 -2.39 -0.02 0.95 16 28 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.15 4.11 5.82 -2.91 -0.02 4.09 16 30 H 0.10 3.85 8.14 -2.39 -0.02 3.83 16 31 H 0.10 3.84 8.14 -2.39 -0.02 3.83 16 32 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 33 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 34 H 0.18 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.42 2.61 8.16 -92.71 -0.76 1.85 16 36 H 0.42 0.78 8.83 -92.71 -0.82 -0.04 16 Total: -1.00 -74.31 329.40 3.92 -70.39 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -1.11 Total: 24.91 kcal Atomic # 6 Polarization: 21.64 SS G_CDS: 4.93 Total: 26.57 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -1.80 Total: -86.36 kcal Atomic # 8 Polarization: -75.72 SS G_CDS: -0.82 Total: -76.54 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.70 Total: -3.12 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -74.31 3.92 -70.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767719152.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.029 kcal (2) G-P(sol) polarization free energy of solvation -74.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds