Wall clock time and date at job start Fri Apr 10 2020 18:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47153 * 2 1 4 4 C 1.46507 * 119.99760 * 269.99885 * 3 2 1 5 5 C 1.50704 * 109.46802 * 270.00157 * 4 3 2 6 6 H 1.07990 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47237 * 89.99737 * 9 7 5 11 11 H 1.48504 * 109.47227 * 209.99793 * 9 7 5 12 12 H 1.48500 * 109.47261 * 329.99726 * 9 7 5 13 13 C 1.34775 * 120.00649 * 90.00245 * 3 2 1 14 14 O 1.21275 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99566 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99836 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00262 * 180.27336 * 17 16 15 20 20 C 1.50693 * 109.47486 * 179.72204 * 19 17 16 21 21 C 1.33642 * 126.04087 * 89.99652 * 20 19 17 22 22 N 1.31779 * 114.50174 * 179.97438 * 21 20 19 23 23 C 1.29029 * 117.12665 * 0.02562 * 22 21 20 24 24 S 1.70979 * 110.16427 * 359.71885 * 23 22 21 25 25 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46784 * 300.00418 * 1 2 3 27 27 H 1.09000 * 109.47131 * 60.00153 * 1 2 3 28 28 H 1.09001 * 109.47446 * 239.99913 * 2 1 3 29 29 H 1.09003 * 109.47278 * 119.99093 * 2 1 3 30 30 H 1.08998 * 109.46807 * 29.99825 * 4 3 2 31 31 H 1.08995 * 109.46943 * 150.00511 * 4 3 2 32 32 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47259 * 60.00127 * 15 13 3 34 34 H 1.09004 * 109.46840 * 299.99907 * 15 13 3 35 35 H 1.09004 * 109.46801 * 299.72165 * 19 17 16 36 36 H 1.09000 * 109.47461 * 59.71633 * 19 17 16 37 37 H 1.07999 * 122.74776 * 0.02562 * 21 20 19 38 38 H 1.07993 * 124.92003 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 5.9777 0.8766 -4.2595 11 1 6.3928 3.2650 -4.1990 12 1 6.7737 1.9175 -2.2191 13 6 2.2430 2.0167 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3065 2.4722 16 8 2.3055 2.1963 3.5758 17 6 2.1346 1.7127 4.8162 18 8 1.7352 0.5833 4.9746 19 6 2.4343 2.5804 6.0113 20 6 2.1556 1.8085 7.2752 21 6 3.0293 1.0463 7.9399 22 7 2.5420 0.4730 9.0218 23 6 1.3058 0.7087 9.3065 24 16 0.6223 1.7572 8.1417 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.5817 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.6755 3.5168 -4.4436 33 1 2.6212 0.4188 2.5302 34 1 0.9432 1.0128 2.5298 35 1 3.4828 2.8774 5.9907 36 1 1.8042 3.4693 5.9821 37 1 4.0512 0.9120 7.6173 38 1 0.7802 0.3056 10.1594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782360058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:53 Heat of formation + Delta-G solvation = -70.229995 kcal Electronic energy + Delta-G solvation = -22862.428089 eV Core-core repulsion = 19218.582350 eV Total energy + Delta-G solvation = -3643.845740 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.76095 -39.83105 -38.96783 -36.52194 -35.34606 -33.33012 -32.86374 -30.22312 -29.47595 -28.15822 -26.53120 -25.00706 -23.12261 -22.72850 -21.43976 -20.32859 -18.79525 -18.35418 -17.97000 -16.85423 -16.76029 -16.43684 -15.96062 -15.76269 -15.28654 -14.70613 -14.51233 -14.26808 -14.16364 -13.68027 -13.50680 -13.33468 -13.06728 -12.69672 -12.53536 -12.13988 -12.08944 -11.66931 -11.57613 -11.26563 -10.97680 -10.92088 -10.75357 -10.65277 -10.55711 -10.17445 -9.99534 -9.69281 -9.63683 -9.29158 -9.04125 -8.47461 -7.79421 -6.08516 -4.13514 0.30517 0.99792 1.39273 2.02328 2.28794 2.65565 3.20336 3.28181 3.35142 3.39874 3.83035 3.96555 4.26383 4.41258 4.62832 4.72395 4.82151 4.91644 5.05591 5.12090 5.16070 5.26236 5.32689 5.32799 5.54960 5.69415 5.78910 5.96095 6.15692 6.26904 6.41192 6.95843 7.35056 7.36004 7.43097 7.58641 7.87399 8.17224 8.25500 8.80631 8.95562 9.51633 10.99665 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.002603 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.258799 B =10752.463287 C =11256.772556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.050 3.950 16 O -0.327 6.327 17 C 0.460 3.540 18 O -0.502 6.502 19 C -0.034 4.034 20 C -0.213 4.213 21 C 0.053 3.947 22 N -0.471 5.471 23 C 0.019 3.981 24 S 0.140 5.860 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.122 0.878 37 H 0.177 0.823 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.103 -4.657 21.799 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.568 4.568 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.027 4.027 16 O -0.241 6.241 17 C 0.302 3.698 18 O -0.390 6.390 19 C -0.074 4.074 20 C -0.335 4.335 21 C -0.099 4.099 22 N -0.184 5.184 23 C -0.278 4.278 24 S 0.393 5.607 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.194 0.806 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.710 -4.200 21.885 23.580 hybrid contribution 1.706 -0.641 -0.705 1.954 sum -6.004 -4.841 21.179 22.540 Atomic orbital electron populations 1.22231 0.96510 1.01717 1.02409 1.21514 0.93770 0.83938 1.03047 1.48219 1.63755 1.13409 1.07146 1.19341 0.96506 0.93713 0.77532 1.21420 0.96829 1.32116 1.06391 0.92397 1.24934 0.97946 0.94824 0.96358 1.69926 1.35750 1.33291 1.14316 0.86480 0.84547 0.77697 0.78611 1.20625 1.21046 1.19860 1.19694 0.79759 0.87154 0.84279 1.90716 1.44538 1.17479 1.86729 1.22996 1.02747 0.92634 0.84334 1.86551 1.78492 1.44927 1.14176 1.23494 0.74731 0.86987 0.84629 1.90692 1.41838 1.19794 1.86669 1.19583 1.06694 0.96800 0.84323 1.25305 0.96952 1.08219 1.02989 1.21775 1.01717 0.95200 0.91230 1.66337 1.11730 1.23079 1.17268 1.28415 0.93931 1.01405 1.04052 1.84041 1.13591 1.44156 1.18890 0.91879 0.93166 0.91750 0.89377 0.91772 0.94608 0.93679 0.92645 0.88609 0.88711 0.85045 0.85974 0.80601 0.78344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.10 1.57 5.93 -4.04 -0.02 1.55 16 3 N -0.59 -12.20 2.46 -175.05 -0.43 -12.63 16 4 C 0.25 6.32 5.16 -5.19 -0.03 6.29 16 5 C -0.53 -14.74 9.39 -34.44 -0.32 -15.07 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.51 10.49 7.75 -10.99 -0.09 10.40 16 14 O -0.52 -13.09 16.08 -14.10 -0.23 -13.32 16 15 C 0.05 0.79 4.50 36.01 0.16 0.95 16 16 O -0.33 -5.08 9.75 -45.90 -0.45 -5.53 16 17 C 0.46 5.92 7.95 36.00 0.29 6.21 16 18 O -0.50 -7.49 15.78 -18.76 -0.30 -7.78 16 19 C -0.03 -0.30 6.35 -29.04 -0.18 -0.48 16 20 C -0.21 -2.01 5.09 -35.92 -0.18 -2.19 16 21 C 0.05 0.53 11.25 -19.18 -0.22 0.31 16 22 N -0.47 -5.02 10.54 -15.75 -0.17 -5.19 16 23 C 0.02 0.15 12.23 51.58 0.63 0.79 16 24 S 0.14 1.13 23.22 -107.50 -2.50 -1.37 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.40 8.07 -51.93 -0.42 0.99 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.10 1.37 7.39 -51.93 -0.38 0.99 16 34 H 0.09 1.30 7.18 -51.93 -0.37 0.93 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.18 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.20 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 349.87 15.07 5.27 5.27 Total: -1.00 -35.70 349.87 -7.53 -43.23 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.77 Total: -2.38 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 0.32 Total: 8.56 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.14 Total: -43.29 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.97 Total: -26.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.13 SS G_CDS: -2.50 Total: -1.37 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.70 -7.53 -43.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782360058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.002 kcal (2) G-P(sol) polarization free energy of solvation -35.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds