Wall clock time and date at job start Fri Apr 10 2020 18:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47153 * 2 1 4 4 C 1.46507 * 119.99760 * 269.99885 * 3 2 1 5 5 C 1.50704 * 109.46802 * 270.00157 * 4 3 2 6 6 H 1.07990 * 120.00456 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99712 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00039 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00035 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47237 * 89.99737 * 9 7 5 11 11 H 1.48504 * 109.47227 * 209.99793 * 9 7 5 12 12 H 1.48500 * 109.47261 * 329.99726 * 9 7 5 13 13 C 1.34775 * 120.00649 * 90.00245 * 3 2 1 14 14 O 1.21275 * 120.00423 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99566 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46859 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99836 * 180.02562 * 16 15 13 18 18 O 1.20833 * 119.99930 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00262 * 180.27336 * 17 16 15 20 20 C 1.50693 * 109.47486 * 179.72204 * 19 17 16 21 21 C 1.33642 * 126.04087 * 89.99652 * 20 19 17 22 22 N 1.31779 * 114.50174 * 179.97438 * 21 20 19 23 23 C 1.29029 * 117.12665 * 0.02562 * 22 21 20 24 24 S 1.70979 * 110.16427 * 359.71885 * 23 22 21 25 25 H 1.08995 * 109.47204 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46784 * 300.00418 * 1 2 3 27 27 H 1.09000 * 109.47131 * 60.00153 * 1 2 3 28 28 H 1.09001 * 109.47446 * 239.99913 * 2 1 3 29 29 H 1.09003 * 109.47278 * 119.99093 * 2 1 3 30 30 H 1.08998 * 109.46807 * 29.99825 * 4 3 2 31 31 H 1.08995 * 109.46943 * 150.00511 * 4 3 2 32 32 H 0.96997 * 120.00431 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47259 * 60.00127 * 15 13 3 34 34 H 1.09004 * 109.46840 * 299.99907 * 15 13 3 35 35 H 1.09004 * 109.46801 * 299.72165 * 19 17 16 36 36 H 1.09000 * 109.47461 * 59.71633 * 19 17 16 37 37 H 1.07999 * 122.74776 * 0.02562 * 21 20 19 38 38 H 1.07993 * 124.92003 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0959 7 6 4.1495 2.3903 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9138 2.0973 -3.4164 10 1 5.9777 0.8766 -4.2595 11 1 6.3928 3.2650 -4.1990 12 1 6.7737 1.9175 -2.2191 13 6 2.2430 2.0167 1.1671 14 8 2.6469 3.1602 1.1671 15 6 1.9914 1.3065 2.4722 16 8 2.3055 2.1963 3.5758 17 6 2.1346 1.7127 4.8162 18 8 1.7352 0.5833 4.9746 19 6 2.4343 2.5804 6.0113 20 6 2.1556 1.8085 7.2752 21 6 3.0293 1.0463 7.9399 22 7 2.5420 0.4730 9.0218 23 6 1.3058 0.7087 9.3065 24 16 0.6223 1.7572 8.1417 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.5817 1.6876 -2.0284 31 1 2.0956 3.1410 -1.1385 32 1 3.6755 3.5168 -4.4436 33 1 2.6212 0.4188 2.5302 34 1 0.9432 1.0128 2.5298 35 1 3.4828 2.8774 5.9907 36 1 1.8042 3.4693 5.9821 37 1 4.0512 0.9120 7.6173 38 1 0.7802 0.3056 10.1594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782360058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:52 Heat of formation + Delta-G solvation = -93.097986 kcal Electronic energy + Delta-G solvation = -22863.419720 eV Core-core repulsion = 19218.582350 eV Total energy + Delta-G solvation = -3644.837370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.84605 -40.73876 -40.34933 -37.69257 -36.97966 -34.94274 -34.05844 -31.76083 -30.77881 -29.15607 -28.16047 -25.79261 -24.85509 -24.15661 -22.45995 -21.02176 -20.29098 -19.13421 -19.03194 -18.63443 -18.00785 -17.89143 -17.42951 -16.86955 -16.49901 -16.25291 -15.84575 -15.20460 -14.94665 -14.81234 -14.77454 -14.52240 -14.23537 -13.97003 -13.67886 -13.64055 -13.38767 -13.27869 -13.07456 -12.68873 -12.51152 -12.23317 -12.21523 -12.06504 -11.81320 -11.78020 -11.72140 -10.74735 -10.65319 -10.64420 -10.30194 -9.92740 -9.55175 -8.23492 -6.37928 -0.35005 0.38357 0.75854 1.04186 1.26312 1.37358 1.40105 1.50256 1.61645 1.87329 2.33589 2.46772 3.06702 3.33991 3.42112 3.57215 3.74936 3.94361 3.97884 4.04139 4.14564 4.36973 4.37246 4.48562 4.57781 4.67651 4.87583 4.93724 5.02255 5.12554 5.18713 5.26589 5.35122 5.53711 5.79116 6.03795 6.51052 6.63861 6.70653 6.71398 7.20845 7.36296 8.83955 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.002603 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.258799 B =10752.463287 C =11256.772556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.063 3.937 16 O -0.346 6.346 17 C 0.463 3.537 18 O -0.523 6.523 19 C -0.029 4.029 20 C -0.229 4.229 21 C 0.041 3.959 22 N -0.505 5.505 23 C 0.022 3.978 24 S 0.160 5.840 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.184 0.816 38 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 -6.137 23.287 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.456 6.456 15 C -0.014 4.014 16 O -0.261 6.261 17 C 0.306 3.694 18 O -0.412 6.412 19 C -0.068 4.068 20 C -0.350 4.350 21 C -0.111 4.111 22 N -0.219 5.219 23 C -0.274 4.274 24 S 0.413 5.587 25 H 0.115 0.885 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.171 0.829 36 H 0.161 0.839 37 H 0.201 0.799 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -7.773 -5.730 23.391 25.306 hybrid contribution 1.636 -0.196 -1.103 1.983 sum -6.137 -5.926 22.288 23.865 Atomic orbital electron populations 1.22173 0.94315 1.03756 1.01870 1.21857 0.95563 0.81026 1.04345 1.48214 1.63596 1.15229 1.05751 1.18796 0.95574 0.91711 0.79766 1.21696 0.97808 1.32183 1.06638 0.92770 1.25842 1.02376 0.94410 0.96418 1.70041 1.37785 1.34067 1.14781 0.85414 0.79001 0.78178 0.78215 1.18858 1.20650 1.19766 1.20548 0.78333 0.86660 0.85829 1.90678 1.47103 1.20098 1.87743 1.22804 1.04618 0.92010 0.81952 1.86563 1.79017 1.45469 1.15085 1.24218 0.73678 0.87171 0.84300 1.90678 1.42962 1.20873 1.86671 1.19734 1.08535 0.96467 0.82085 1.25415 0.97651 1.08634 1.03338 1.22009 1.02415 0.95305 0.91380 1.66375 1.13007 1.24397 1.18085 1.28987 0.93398 1.00481 1.04555 1.83962 1.12667 1.43697 1.18342 0.88469 0.92380 0.93652 0.90050 0.88486 0.95279 0.98130 0.92344 0.86648 0.86144 0.82853 0.83895 0.79884 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.09 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.79 2.46 -826.14 -2.03 -26.82 16 4 C 0.26 13.94 5.16 85.63 0.44 14.38 16 5 C -0.54 -31.05 9.39 25.60 0.24 -30.81 16 6 H 0.05 3.05 7.81 -2.92 -0.02 3.03 16 7 C 0.01 0.50 5.46 84.66 0.46 0.96 16 8 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 9 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 10 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 C 0.50 20.82 7.75 87.66 0.68 21.50 16 14 O -0.58 -30.16 16.08 15.79 0.25 -29.90 16 15 C 0.06 1.88 4.50 71.24 0.32 2.20 16 16 O -0.35 -10.34 9.75 -45.06 -0.44 -10.78 16 17 C 0.46 11.08 7.95 71.23 0.57 11.65 16 18 O -0.52 -14.54 15.78 21.94 0.35 -14.20 16 19 C -0.03 -0.45 6.35 29.10 0.18 -0.26 16 20 C -0.23 -3.91 5.09 24.64 0.13 -3.78 16 21 C 0.04 0.76 11.25 83.66 0.94 1.70 16 22 N -0.50 -10.08 10.54 -203.75 -2.15 -12.22 16 23 C 0.02 0.32 12.23 130.65 1.60 1.91 16 24 S 0.16 2.24 23.22 -56.49 -1.31 0.93 16 25 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 1.30 7.22 -2.39 -0.02 1.29 16 27 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 29 H 0.10 2.24 6.44 -2.39 -0.02 2.22 16 30 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 31 H 0.00 0.04 7.42 -2.39 -0.02 0.02 16 32 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 33 H 0.12 3.01 7.39 -2.39 -0.02 2.99 16 34 H 0.12 2.98 7.18 -2.38 -0.02 2.96 16 35 H 0.15 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 38 H 0.23 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -80.06 349.87 4.87 -75.18 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: 1.08 Total: 6.94 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.81 Total: 19.57 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.89 Total: -94.30 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: 0.16 Total: -54.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -1.31 Total: 0.93 kcal Total: -80.06 4.87 -75.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782360058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.914 kcal (2) G-P(sol) polarization free energy of solvation -80.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds