Wall clock time and date at job start Fri Apr 10 2020 18:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46818 * 2 1 4 4 O 1.45198 * 109.46946 * 240.00555 * 2 1 3 5 5 C 1.34230 * 117.00173 * 89.99709 * 4 2 1 6 6 O 1.20822 * 120.00010 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99763 * 180.02562 * 5 4 2 8 8 S 1.81003 * 109.46853 * 179.97438 * 7 5 4 9 9 C 1.76196 * 99.99846 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00030 * 359.97438 * 9 8 7 11 11 C 1.38802 * 119.99637 * 180.02562 * 9 8 7 12 12 N 1.31628 * 120.00513 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99570 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47083 * 60.00261 * 13 11 9 15 15 H 1.48506 * 109.46585 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47209 * 299.99712 * 13 11 9 17 17 C 1.50693 * 109.47132 * 120.00509 * 2 1 3 18 18 O 1.21282 * 120.00334 * 120.00189 * 17 2 1 19 19 N 1.34779 * 119.99926 * 299.99787 * 17 2 1 20 20 C 1.46500 * 119.99929 * 180.02562 * 19 17 2 21 21 C 1.47197 * 112.85406 * 50.32789 * 20 19 17 22 22 N 5.02585 * 130.08840 * 110.91682 * 2 1 3 23 23 C 1.53788 * 113.61130 * 279.13358 * 20 19 17 24 24 C 1.53955 * 87.01827 * 220.05070 * 23 20 19 25 25 C 1.53775 * 87.11263 * 25.36002 * 24 23 20 26 26 H 1.08995 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47111 * 299.99632 * 1 2 3 28 28 H 1.08999 * 109.47362 * 59.99353 * 1 2 3 29 29 H 1.09000 * 109.47318 * 299.99486 * 7 5 4 30 30 H 1.09000 * 109.47161 * 60.00117 * 7 5 4 31 31 H 0.96995 * 120.00407 * 180.02562 * 12 11 9 32 32 H 0.96993 * 120.00080 * 359.97438 * 19 17 2 33 33 H 1.08997 * 113.61392 * 334.56674 * 23 20 19 34 34 H 1.09003 * 113.61353 * 105.47024 * 23 20 19 35 35 H 1.09004 * 113.53331 * 270.80896 * 24 23 20 36 36 H 1.09002 * 113.74211 * 139.94607 * 24 23 20 37 37 H 1.08997 * 113.61691 * 220.08935 * 25 24 23 38 38 H 1.09005 * 113.68852 * 89.19751 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2170 0.0642 -2.2811 6 8 1.9972 1.2519 -2.2506 7 6 2.7181 -0.5770 -3.5496 8 16 2.8885 0.6842 -4.8366 9 6 3.4722 -0.3130 -6.1668 10 1 3.6167 -1.3736 -6.0235 11 6 3.7473 0.2649 -7.3985 12 7 3.5727 1.5578 -7.5727 13 14 4.3668 -0.7923 -8.8085 14 1 3.3618 -1.8401 -9.1203 15 1 4.5839 0.0582 -10.0064 16 1 5.6478 -1.4350 -8.4197 17 6 2.0323 -0.7105 1.2303 18 8 2.7296 -1.6965 1.1190 19 7 1.7068 -0.2501 2.4545 20 6 2.1956 -0.9405 3.6506 21 6 3.6469 -1.1839 3.6172 22 7 4.7665 -1.3727 3.5916 23 6 1.3709 -2.1835 4.0246 24 6 1.5295 -1.7479 5.4927 25 6 1.7062 -0.3137 4.9669 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 3.6870 -1.0406 -3.3642 30 1 2.0086 -1.3367 -3.8775 31 1 3.7645 1.9615 -8.4335 32 1 1.1495 0.5387 2.5436 33 1 0.3417 -2.1483 3.6675 34 1 1.8691 -3.1245 3.7910 35 1 2.4219 -2.1503 5.9721 36 1 0.6289 -1.8858 6.0911 37 1 2.4747 0.2526 5.4930 38 1 0.7695 0.2348 4.8675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787635423.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:01 Heat of formation + Delta-G solvation = -92.521081 kcal Electronic energy + Delta-G solvation = -22692.483725 eV Core-core repulsion = 19047.671371 eV Total energy + Delta-G solvation = -3644.812354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10401 -41.35531 -39.57800 -37.58627 -37.05370 -35.04634 -34.63151 -32.95350 -31.03210 -27.73271 -27.35278 -26.79961 -25.56395 -23.02317 -22.22254 -21.30994 -19.99969 -19.28648 -18.72628 -18.39952 -17.50874 -17.06224 -16.95448 -16.89182 -16.20268 -16.10025 -15.73627 -15.31123 -15.05195 -14.69602 -14.55439 -14.26524 -14.07163 -14.01158 -13.71951 -13.34249 -13.30487 -13.21374 -12.90187 -12.88536 -12.74602 -12.67764 -12.47259 -12.01212 -11.82385 -11.71608 -11.70864 -11.61222 -11.16678 -10.92288 -10.47518 -10.43330 -8.75533 -8.39489 -6.19099 0.77016 1.02495 1.18809 1.29919 1.41020 1.43149 1.52294 1.53038 1.74933 2.21625 2.27844 2.62747 2.95348 3.23784 3.35168 3.39956 3.54388 3.68353 3.81632 3.83759 3.86693 4.11624 4.27885 4.39738 4.63190 4.67946 4.76260 4.80607 4.92602 5.01474 5.05762 5.09512 5.16732 5.18272 5.39056 5.42548 6.15953 6.20430 6.38699 6.58413 6.95415 7.02223 8.69431 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.032080 B = 0.002431 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.604649 B =11515.913167 C =11887.105649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.059 3.941 3 H 0.117 0.883 4 O -0.339 6.339 5 C 0.492 3.508 6 O -0.508 6.508 7 C -0.112 4.112 8 S -0.125 6.125 9 C -0.553 4.553 10 H 0.083 0.917 11 C 0.018 3.982 12 N -0.908 5.908 13 Si 0.998 3.002 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.265 1.265 17 C 0.521 3.479 18 O -0.553 6.553 19 N -0.686 5.686 20 C 0.222 3.778 21 C 0.236 3.764 22 N -0.468 5.468 23 C -0.129 4.129 24 C -0.133 4.133 25 C -0.103 4.103 26 H 0.077 0.923 27 H 0.128 0.872 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.274 0.726 32 H 0.435 0.565 33 H 0.132 0.868 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 -3.780 28.242 31.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 H 0.134 0.866 4 O -0.256 6.256 5 C 0.334 3.666 6 O -0.396 6.396 7 C -0.260 4.260 8 S 0.102 5.898 9 C -0.700 4.700 10 H 0.101 0.899 11 C -0.187 4.187 12 N -0.543 5.543 13 Si 0.819 3.181 14 H -0.185 1.185 15 H -0.201 1.201 16 H -0.190 1.190 17 C 0.307 3.693 18 O -0.429 6.429 19 N -0.344 5.344 20 C 0.132 3.868 21 C -0.083 4.083 22 N -0.145 5.145 23 C -0.169 4.169 24 C -0.171 4.171 25 C -0.141 4.141 26 H 0.096 0.904 27 H 0.147 0.853 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.141 0.859 31 H 0.083 0.917 32 H 0.277 0.723 33 H 0.150 0.850 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.107 0.893 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -10.880 -3.121 28.076 30.272 hybrid contribution 0.629 -1.268 -1.345 1.953 sum -10.251 -4.390 26.731 28.964 Atomic orbital electron populations 1.22226 0.88431 1.04874 1.05986 1.22818 0.98590 0.97427 0.81119 0.86578 1.86616 1.77404 1.41773 1.19765 1.22946 0.73610 0.85416 0.84615 1.90640 1.48070 1.16952 1.83897 1.23105 1.05938 1.04154 0.92834 1.85368 1.87066 1.12531 1.04802 1.23162 1.52041 0.96892 0.97933 0.89892 1.26088 0.94773 0.96764 1.01108 1.70135 1.46468 1.11949 1.25795 0.85010 0.79021 0.77840 0.76186 1.18537 1.20063 1.19012 1.20457 0.79481 0.84100 0.85294 1.90791 1.37920 1.27334 1.86880 1.45660 1.53371 1.33182 1.02137 1.19353 0.80093 0.99597 0.87708 1.29165 0.94924 0.92247 0.91981 1.81190 1.14711 1.09564 1.09000 1.23563 1.01258 0.94808 0.97243 1.22840 1.04311 0.94868 0.95111 1.23454 1.04387 0.98308 0.87948 0.90382 0.85346 0.91553 0.86971 0.85881 0.91739 0.72310 0.85015 0.92525 0.90893 0.86526 0.89342 0.83055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.45 71.98 0.68 -1.59 16 2 C 0.06 1.35 2.98 29.85 0.09 1.44 16 3 H 0.12 2.63 7.16 -2.39 -0.02 2.61 16 4 O -0.34 -11.21 9.41 -45.06 -0.42 -11.64 16 5 C 0.49 18.96 7.95 71.24 0.57 19.53 16 6 O -0.51 -21.41 15.08 21.98 0.33 -21.08 16 7 C -0.11 -4.70 6.27 71.24 0.45 -4.25 16 8 S -0.12 -6.80 20.58 -56.49 -1.16 -7.96 16 9 C -0.55 -31.56 9.50 67.96 0.65 -30.91 16 10 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 11 C 0.02 1.02 5.49 84.86 0.47 1.49 16 12 N -0.91 -54.80 13.22 21.65 0.29 -54.51 16 13 Si 1.00 43.63 29.55 68.60 2.03 45.66 16 14 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 15 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 C 0.52 11.59 6.98 87.65 0.61 12.20 16 18 O -0.55 -18.32 15.26 15.76 0.24 -18.08 16 19 N -0.69 -7.52 5.20 -428.77 -2.23 -9.75 16 20 C 0.22 2.58 1.18 2.32 0.00 2.58 16 21 C 0.24 5.48 12.64 89.44 1.13 6.61 16 22 N -0.47 -14.47 18.54 20.00 0.37 -14.10 16 23 C -0.13 -1.06 7.45 31.18 0.23 -0.82 16 24 C -0.13 -0.40 7.80 31.18 0.24 -0.16 16 25 C -0.10 -0.15 7.34 31.12 0.23 0.07 16 26 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.13 0.53 7.56 -2.39 -0.02 0.51 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 4.53 8.14 -2.39 -0.02 4.51 16 30 H 0.12 4.69 8.14 -2.40 -0.02 4.67 16 31 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 32 H 0.43 0.66 8.06 -92.71 -0.75 -0.08 16 33 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.06 0.79 8.08 -2.39 -0.02 0.77 16 35 H 0.07 0.45 8.13 -2.39 -0.02 0.43 16 36 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 37 H 0.09 0.19 8.08 -2.39 -0.02 0.17 16 38 H 0.15 -0.94 8.13 -2.38 -0.02 -0.96 16 Total: -1.00 -87.86 353.37 5.13 -82.73 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 0.35 Total: 2.55 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 5.34 Total: 6.18 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.57 Total: -78.37 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: 0.15 Total: -50.80 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -1.16 Total: -7.96 kcal Total: -87.86 5.13 -82.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787635423.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.790 kcal (2) G-P(sol) polarization free energy of solvation -87.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds