Wall clock time and date at job start Fri Apr 10 2020 18:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 F 1.39902 * 109.47028 * 29.99432 * 6 5 4 8 8 F 1.39901 * 109.47111 * 149.99504 * 6 5 4 9 9 C 1.50701 * 109.47339 * 269.99573 * 6 5 4 10 10 O 1.21289 * 119.99525 * 24.99697 * 9 6 5 11 11 N 1.34774 * 120.00152 * 205.00314 * 9 6 5 12 12 C 1.46505 * 119.99740 * 179.97438 * 11 9 6 13 13 C 1.50703 * 109.47001 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99465 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00077 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00277 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99661 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00232 * 179.97438 * 16 15 13 19 19 N 1.31417 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00107 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46911 * 90.00334 * 20 18 16 22 22 H 1.48498 * 109.47502 * 210.00383 * 20 18 16 23 23 H 1.48499 * 109.47139 * 330.00646 * 20 18 16 24 24 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 0.96989 * 120.00111 * 359.97438 * 11 9 6 32 32 H 1.08995 * 109.47046 * 299.99945 * 12 11 9 33 33 H 1.09002 * 109.47060 * 59.99686 * 12 11 9 34 34 H 0.97004 * 120.00014 * 0.02562 * 15 13 12 35 35 H 0.97001 * 119.99765 * 179.97438 * 19 18 16 36 36 H 1.07999 * 119.99934 * 180.25938 * 24 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 9 6.2475 1.1410 0.6497 8 9 6.2475 -1.1436 0.6455 9 6 6.2757 0.0026 -1.4328 10 8 5.5769 0.4482 -2.3184 11 7 7.4965 -0.4902 -1.7211 12 6 7.9794 -0.4880 -3.1043 13 6 9.3610 -1.0878 -3.1550 14 8 9.8899 -1.4790 -2.1360 15 7 10.0083 -1.1905 -4.3326 16 6 11.2649 -1.7366 -4.3788 17 1 11.7360 -2.0849 -3.4715 18 6 11.9321 -1.8429 -5.5930 19 7 11.3586 -1.4195 -6.6970 20 14 13.6446 -2.5864 -5.6558 21 1 13.5402 -4.0524 -5.8680 22 1 14.4079 -1.9773 -6.7745 23 1 14.3469 -2.3205 -4.3747 24 6 3.5805 -1.1972 0.0010 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 8.0554 -0.8462 -1.0129 32 1 7.3044 -1.0765 -3.7256 33 1 8.0145 0.5363 -3.4753 34 1 9.5850 -0.8780 -5.1475 35 1 11.8245 -1.4934 -7.5446 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804819956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:10 Heat of formation + Delta-G solvation = -146.211686 kcal Electronic energy + Delta-G solvation = -24984.750621 eV Core-core repulsion = 20783.769681 eV Total energy + Delta-G solvation = -4200.980940 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.107 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.38513 -47.38455 -39.97040 -39.34227 -38.19036 -34.71371 -33.87960 -33.56777 -31.45223 -31.22877 -29.52459 -27.90925 -25.58788 -24.33772 -23.03834 -21.70943 -20.58706 -19.79189 -18.66121 -18.17803 -17.94217 -17.74095 -16.12269 -15.62452 -15.47911 -15.34066 -15.16850 -15.03806 -14.77109 -14.35991 -14.16043 -14.08883 -13.90011 -13.74865 -13.74438 -13.46665 -13.27731 -12.57222 -12.55118 -12.33506 -12.29055 -12.08407 -11.67567 -11.52235 -11.30925 -11.15903 -10.48856 -10.36556 -10.09148 -9.68752 -9.19316 -9.12498 -9.00773 -8.71718 -8.15800 -6.56249 -3.98460 0.84124 1.14067 2.14170 2.56677 3.08785 3.20109 3.25538 3.31802 3.62328 3.66229 3.79875 4.07485 4.31044 4.53625 4.59305 4.65050 4.73522 4.74975 5.07539 5.11736 5.14288 5.27088 5.41439 5.42140 5.70265 5.72614 5.76470 5.79927 5.93740 6.04070 6.14546 6.27782 6.32538 6.64636 7.34158 7.42002 7.82937 7.94513 8.38739 8.99421 9.32483 9.79990 10.60457 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.031076 B = 0.002560 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.791448 B =10935.800077 C =11224.759559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.067 4.067 3 C -0.123 4.123 4 C -0.064 4.064 5 C -0.146 4.146 6 C 0.336 3.664 7 F -0.175 7.175 8 F -0.179 7.179 9 C 0.485 3.515 10 O -0.502 6.502 11 N -0.684 5.684 12 C 0.106 3.894 13 C 0.426 3.574 14 O -0.594 6.594 15 N -0.546 5.546 16 C -0.306 4.306 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.894 5.894 20 Si 0.934 3.066 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.268 1.268 24 C -0.076 4.076 25 C -0.123 4.123 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.418 0.582 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.396 0.604 35 H 0.275 0.725 36 H 0.132 0.868 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.266 3.492 11.373 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.067 4.067 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.148 4.148 6 C 0.296 3.704 7 F -0.156 7.156 8 F -0.160 7.160 9 C 0.265 3.735 10 O -0.377 6.377 11 N -0.338 5.338 12 C -0.021 4.021 13 C 0.211 3.789 14 O -0.481 6.481 15 N -0.181 5.181 16 C -0.435 4.435 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.534 5.534 20 Si 0.761 3.239 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.094 4.094 25 C -0.141 4.141 26 H 0.093 0.907 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.147 0.853 30 H 0.149 0.851 31 H 0.258 0.742 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.150 0.850 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.263 3.544 11.202 22.563 hybrid contribution 1.115 -0.324 -0.220 1.181 sum -18.148 3.221 10.982 21.455 Atomic orbital electron populations 1.20841 0.90800 1.02995 1.02708 1.20091 0.96387 0.93203 0.97063 1.20987 0.93483 0.97936 1.01712 1.20877 0.94491 0.97115 0.95699 1.19722 0.91090 0.95978 1.07971 1.19632 0.91143 0.72837 0.86757 1.93083 1.89946 1.50415 1.82115 1.93077 1.89834 1.50234 1.82854 1.20436 0.82850 0.80676 0.89540 1.90778 1.55707 1.45173 1.46062 1.45693 1.16282 1.60283 1.11576 1.21119 0.95841 1.02787 0.82353 1.19617 0.87402 0.86686 0.85190 1.90522 1.68649 1.55130 1.33796 1.41778 1.16031 1.52875 1.07372 1.19745 0.91400 1.36824 0.95528 0.87571 1.25344 1.00437 0.97237 0.94665 1.69615 1.38974 1.45868 0.98901 0.85791 0.81011 0.78940 0.78184 1.20208 1.20758 1.19257 1.20925 0.94680 0.97097 0.96740 1.20975 0.93432 0.97962 1.01736 0.90731 0.91292 0.91290 0.85272 0.85057 0.74215 0.89153 0.89152 0.76987 0.91513 0.84997 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.01 36.01 0.36 -0.34 16 2 C -0.07 -0.61 5.88 -104.62 -0.62 -1.23 16 3 C -0.12 -1.19 9.70 -39.58 -0.38 -1.58 16 4 C -0.06 -0.74 9.36 -39.58 -0.37 -1.12 16 5 C -0.15 -1.90 4.39 -104.63 -0.46 -2.36 16 6 C 0.34 4.81 2.22 -29.04 -0.06 4.74 16 7 F -0.17 -2.49 16.19 2.25 0.04 -2.45 16 8 F -0.18 -2.52 15.65 2.25 0.04 -2.49 16 9 C 0.49 7.92 7.22 -10.99 -0.08 7.84 16 10 O -0.50 -9.08 16.23 5.55 0.09 -8.99 16 11 N -0.68 -11.71 5.46 -61.47 -0.34 -12.04 16 12 C 0.11 1.91 6.15 -5.19 -0.03 1.88 16 13 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 14 O -0.59 -15.20 15.24 5.55 0.08 -15.11 16 15 N -0.55 -13.33 5.29 -10.97 -0.06 -13.39 16 16 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.89 -23.57 13.05 55.50 0.72 -22.84 16 20 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 24 C -0.08 -0.88 9.40 -39.58 -0.37 -1.25 16 25 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 30 H 0.13 1.43 7.60 -52.49 -0.40 1.03 16 31 H 0.42 7.27 6.99 -40.82 -0.29 6.99 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 35 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.13 1.39 7.60 -52.49 -0.40 0.99 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 337.33 15.07 5.08 5.08 Total: -1.00 -30.66 337.33 -5.96 -36.62 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -3.87 Total: 13.48 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -2.73 Total: 6.80 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.33 Total: -48.28 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: 0.17 Total: -24.11 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.66 -5.96 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.588 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds