Wall clock time and date at job start Fri Apr 10 2020 18:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 F 1.39902 * 109.47028 * 29.99432 * 6 5 4 8 8 F 1.39901 * 109.47111 * 149.99504 * 6 5 4 9 9 C 1.50701 * 109.47339 * 269.99573 * 6 5 4 10 10 O 1.21289 * 119.99525 * 24.99697 * 9 6 5 11 11 N 1.34774 * 120.00152 * 205.00314 * 9 6 5 12 12 C 1.46505 * 119.99740 * 179.97438 * 11 9 6 13 13 C 1.50703 * 109.47001 * 179.97438 * 12 11 9 14 14 O 1.21292 * 119.99465 * 0.02562 * 13 12 11 15 15 N 1.34769 * 120.00077 * 179.97438 * 13 12 11 16 16 C 1.37098 * 120.00277 * 180.02562 * 15 13 12 17 17 H 1.07996 * 119.99661 * 0.02562 * 16 15 13 18 18 C 1.38949 * 120.00232 * 179.97438 * 16 15 13 19 19 N 1.31417 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00107 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46911 * 90.00334 * 20 18 16 22 22 H 1.48498 * 109.47502 * 210.00383 * 20 18 16 23 23 H 1.48499 * 109.47139 * 330.00646 * 20 18 16 24 24 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 25 25 C 1.38234 * 120.00033 * 0.49775 * 24 5 4 26 26 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 27 27 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 28 28 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 29 29 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 30 30 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 31 31 H 0.96989 * 120.00111 * 359.97438 * 11 9 6 32 32 H 1.08995 * 109.47046 * 299.99945 * 12 11 9 33 33 H 1.09002 * 109.47060 * 59.99686 * 12 11 9 34 34 H 0.97004 * 120.00014 * 0.02562 * 15 13 12 35 35 H 0.97001 * 119.99765 * 179.97438 * 19 18 16 36 36 H 1.07999 * 119.99934 * 180.25938 * 24 5 4 37 37 H 1.08001 * 120.00294 * 179.76453 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 9 6.2475 1.1410 0.6497 8 9 6.2475 -1.1436 0.6455 9 6 6.2757 0.0026 -1.4328 10 8 5.5769 0.4482 -2.3184 11 7 7.4965 -0.4902 -1.7211 12 6 7.9794 -0.4880 -3.1043 13 6 9.3610 -1.0878 -3.1550 14 8 9.8899 -1.4790 -2.1360 15 7 10.0083 -1.1905 -4.3326 16 6 11.2649 -1.7366 -4.3788 17 1 11.7360 -2.0849 -3.4715 18 6 11.9321 -1.8429 -5.5930 19 7 11.3586 -1.4195 -6.6970 20 14 13.6446 -2.5864 -5.6558 21 1 13.5402 -4.0524 -5.8680 22 1 14.4079 -1.9773 -6.7745 23 1 14.3469 -2.3205 -4.3747 24 6 3.5805 -1.1972 0.0010 25 6 2.1982 -1.1972 0.0009 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6582 2.1324 -0.0004 30 1 4.1205 2.1325 0.0001 31 1 8.0554 -0.8462 -1.0129 32 1 7.3044 -1.0765 -3.7256 33 1 8.0145 0.5363 -3.4753 34 1 9.5850 -0.8780 -5.1475 35 1 11.8245 -1.4934 -7.5446 36 1 4.1205 -2.1325 0.0013 37 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804819956.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:09 Heat of formation + Delta-G solvation = -166.064879 kcal Electronic energy + Delta-G solvation = -24985.611520 eV Core-core repulsion = 20783.769681 eV Total energy + Delta-G solvation = -4201.841839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.107 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -50.51911 -48.52018 -41.25742 -40.38309 -39.85927 -36.39393 -35.58480 -34.37405 -33.42362 -31.99970 -30.65666 -29.16886 -26.94317 -25.82403 -23.81758 -22.73346 -21.71382 -21.48229 -20.27065 -19.78206 -19.07002 -18.89456 -17.67305 -17.06201 -16.80907 -16.76257 -16.28301 -16.12533 -16.07084 -15.59717 -15.51161 -15.44012 -15.13701 -14.89642 -14.72961 -14.49672 -14.33433 -14.05926 -13.71892 -13.57195 -13.47836 -13.04063 -12.99800 -12.93129 -12.48309 -12.34763 -12.13836 -12.02048 -11.60261 -11.38974 -10.63702 -10.53640 -10.13048 -9.97923 -9.77535 -8.53832 -6.04160 0.01244 0.35885 0.83377 1.30210 1.34666 1.43052 1.55338 1.85557 2.25032 2.38229 2.61162 2.69270 3.01181 3.13086 3.27514 3.36604 3.89298 3.97022 3.97826 4.11940 4.30544 4.31007 4.41007 4.42999 4.72810 4.76087 4.86300 4.87537 5.04747 5.20178 5.30944 5.32527 5.36204 5.57161 5.87103 5.91740 5.97840 6.43775 6.54687 7.00473 7.38996 7.89714 8.62855 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.031076 B = 0.002560 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.791448 B =10935.800077 C =11224.759559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.066 4.066 3 C -0.126 4.126 4 C -0.080 4.080 5 C -0.172 4.172 6 C 0.342 3.658 7 F -0.176 7.176 8 F -0.180 7.180 9 C 0.489 3.511 10 O -0.519 6.519 11 N -0.688 5.688 12 C 0.118 3.882 13 C 0.430 3.570 14 O -0.625 6.625 15 N -0.555 5.555 16 C -0.338 4.338 17 H 0.086 0.914 18 C -0.009 4.009 19 N -0.914 5.914 20 Si 0.997 3.003 21 H -0.270 1.270 22 H -0.271 1.271 23 H -0.271 1.271 24 C -0.091 4.091 25 C -0.126 4.126 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.131 0.869 31 H 0.417 0.583 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.400 0.600 35 H 0.281 0.719 36 H 0.134 0.866 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.871 3.500 11.396 24.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.098 4.098 5 C -0.173 4.173 6 C 0.302 3.698 7 F -0.157 7.157 8 F -0.161 7.161 9 C 0.270 3.730 10 O -0.394 6.394 11 N -0.342 5.342 12 C -0.009 4.009 13 C 0.217 3.783 14 O -0.513 6.513 15 N -0.190 5.190 16 C -0.467 4.467 17 H 0.104 0.896 18 C -0.210 4.210 19 N -0.554 5.554 20 Si 0.820 3.180 21 H -0.195 1.195 22 H -0.196 1.196 23 H -0.195 1.195 24 C -0.110 4.110 25 C -0.144 4.144 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.172 0.828 30 H 0.149 0.851 31 H 0.256 0.744 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.152 0.848 37 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -20.892 3.562 11.222 23.981 hybrid contribution 1.515 -0.306 -0.188 1.557 sum -19.377 3.256 11.034 22.534 Atomic orbital electron populations 1.20915 0.88328 1.04375 1.03551 1.20525 0.98190 0.92672 0.95224 1.21330 0.92769 0.99473 1.00790 1.21048 0.95629 0.96723 0.96413 1.19762 0.89952 0.97179 1.10411 1.19535 0.92245 0.72716 0.85309 1.93075 1.90121 1.50544 1.81973 1.93072 1.89999 1.50296 1.82702 1.20756 0.82093 0.79756 0.90433 1.90759 1.56012 1.45769 1.46902 1.45726 1.16718 1.60709 1.11060 1.20993 0.93016 1.03444 0.83430 1.20314 0.88611 0.85249 0.84139 1.90500 1.69935 1.56092 1.34764 1.41810 1.15765 1.53379 1.08085 1.19733 0.92856 1.38729 0.95405 0.89600 1.26127 1.03775 0.97117 0.93980 1.69673 1.40287 1.46093 0.99313 0.84868 0.76593 0.78380 0.78164 1.19490 1.19567 1.19543 1.21107 0.95777 0.96728 0.97343 1.21323 0.92759 0.99470 1.00806 0.89955 0.89992 0.89954 0.82798 0.85075 0.74392 0.87476 0.87573 0.76515 0.90969 0.84818 0.82810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.01 71.24 0.71 -0.29 16 2 C -0.07 -1.04 5.88 -19.86 -0.12 -1.15 16 3 C -0.13 -2.20 9.70 22.27 0.22 -1.98 16 4 C -0.08 -1.82 9.36 22.27 0.21 -1.61 16 5 C -0.17 -4.41 4.39 -19.87 -0.09 -4.50 16 6 C 0.34 9.79 2.22 29.10 0.06 9.85 16 7 F -0.18 -5.05 16.19 44.97 0.73 -4.32 16 8 F -0.18 -5.10 15.65 44.97 0.70 -4.39 16 9 C 0.49 15.85 7.22 87.66 0.63 16.49 16 10 O -0.52 -18.51 16.23 -3.06 -0.05 -18.56 16 11 N -0.69 -23.46 5.46 -466.77 -2.55 -26.01 16 12 C 0.12 4.20 6.15 85.63 0.53 4.72 16 13 C 0.43 19.67 7.85 87.66 0.69 20.36 16 14 O -0.62 -32.52 15.24 -3.07 -0.05 -32.57 16 15 N -0.56 -27.47 5.29 -306.99 -1.62 -29.09 16 16 C -0.34 -18.47 9.68 84.04 0.81 -17.66 16 17 H 0.09 4.96 7.16 -2.91 -0.02 4.94 16 18 C -0.01 -0.46 5.50 84.93 0.47 0.00 16 19 N -0.91 -47.89 13.05 21.66 0.28 -47.61 16 20 Si 1.00 41.45 29.55 68.60 2.03 43.48 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 24 C -0.09 -2.05 9.40 22.27 0.21 -1.84 16 25 C -0.13 -2.18 9.70 22.27 0.22 -1.97 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.63 16 27 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 28 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 29 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 30 H 0.13 2.83 7.60 -2.91 -0.02 2.81 16 31 H 0.42 14.64 6.99 -92.72 -0.65 13.99 16 32 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 34 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16 35 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.13 2.79 7.60 -2.91 -0.02 2.77 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -65.44 337.33 3.79 -61.66 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.24 Total: 36.99 kcal Atomic # 6 Polarization: 15.88 SS G_CDS: 4.55 Total: 20.43 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -3.89 Total: -102.71 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.10 Total: -51.13 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 1.43 Total: -8.72 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -65.44 3.79 -61.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804819956.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.408 kcal (2) G-P(sol) polarization free energy of solvation -65.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds