Wall clock time and date at job start Fri Apr 10 2020 18:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29033 * 124.91551 * 2 1 4 4 C 1.31781 * 117.12391 * 179.97438 * 3 2 1 5 5 C 1.33639 * 114.50139 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.03597 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.99975 * 6 5 4 8 8 N 1.46500 * 109.47473 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00376 * 180.02562 * 8 7 6 10 10 O 1.21591 * 119.99538 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00462 * 180.02562 * 9 8 7 12 12 C 1.46490 * 120.00326 * 179.97438 * 11 9 8 13 13 C 1.50708 * 109.47320 * 179.97438 * 12 11 9 14 14 O 1.21291 * 119.99458 * 0.02562 * 13 12 11 15 15 N 1.34771 * 119.99850 * 179.97438 * 13 12 11 16 16 C 1.37105 * 119.99758 * 180.02562 * 15 13 12 17 17 H 1.07997 * 119.99645 * 359.97438 * 16 15 13 18 18 C 1.38945 * 120.00170 * 180.02562 * 16 15 13 19 19 N 1.31417 * 119.99705 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00303 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46825 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47189 * 119.99555 * 20 18 16 23 23 H 1.48493 * 109.47460 * 240.00071 * 20 18 16 24 24 S 1.70977 * 124.91989 * 180.30875 * 2 1 3 25 25 H 1.09004 * 109.46618 * 89.98126 * 1 2 3 26 26 H 1.08996 * 109.47467 * 209.97467 * 1 2 3 27 27 H 1.09004 * 109.47779 * 329.98128 * 1 2 3 28 28 H 1.08006 * 122.74698 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47060 * 210.00030 * 6 5 4 30 30 H 1.09001 * 109.47380 * 330.00118 * 6 5 4 31 31 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 32 32 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 33 33 H 0.97004 * 119.99396 * 0.02562 * 8 7 6 34 34 H 0.97004 * 119.99310 * 359.97438 * 11 9 8 35 35 H 1.09004 * 109.47379 * 300.00097 * 12 11 9 36 36 H 1.09004 * 109.47542 * 59.99993 * 12 11 9 37 37 H 0.96992 * 120.00669 * 0.02562 * 15 13 12 38 38 H 0.97001 * 119.99475 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8794 0.0005 5 6 3.9354 -0.4006 0.0004 6 6 5.3575 -0.8993 0.0004 7 6 5.8387 -1.0682 1.4429 8 7 7.2210 -1.5536 1.4429 9 6 7.8567 -1.7773 2.6101 10 8 7.2828 -1.5766 3.6631 11 7 9.1285 -2.2233 2.6101 12 6 9.8196 -2.4659 3.8788 13 6 11.2176 -2.9569 3.6034 14 8 11.5991 -3.0905 2.4598 15 7 12.0441 -3.2465 4.6278 16 6 13.3161 -3.6926 4.3773 17 1 13.6555 -3.8124 3.3590 18 6 14.1680 -3.9917 5.4333 19 7 13.7547 -3.8464 6.6723 20 14 15.9008 -4.6003 5.0921 21 1 16.1183 -4.6775 3.6250 22 1 16.8824 -3.6598 5.6896 23 1 16.0790 -5.9478 5.6899 24 16 2.4857 -1.4019 -0.0076 25 1 -0.3633 0.0003 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3635 0.8898 0.5141 28 1 4.2531 1.7002 0.0002 29 1 5.4058 -1.8593 -0.5135 30 1 5.9949 -0.1797 -0.5134 31 1 5.7904 -0.1081 1.9568 32 1 5.2014 -1.7877 1.9567 33 1 7.6786 -1.7140 0.6028 34 1 9.5861 -2.3837 1.7700 35 1 9.8657 -1.5390 4.4505 36 1 9.2766 -3.2187 4.4503 37 1 11.7391 -3.1393 5.5423 38 1 14.3497 -4.0549 7.4096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805221455.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:12 Heat of formation + Delta-G solvation = -32.084001 kcal Electronic energy + Delta-G solvation = -21671.528422 eV Core-core repulsion = 18061.629568 eV Total energy + Delta-G solvation = -3609.898854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.104 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.14653 -39.80265 -38.23540 -35.94232 -34.40713 -33.66902 -33.22567 -31.39730 -31.02748 -28.06773 -26.74226 -24.67871 -24.16173 -22.81730 -20.83141 -19.72325 -19.58078 -18.57307 -18.24838 -17.91850 -16.39426 -15.87481 -15.61904 -15.45649 -15.25377 -14.76584 -14.64108 -14.45213 -14.04545 -13.98963 -13.79328 -13.53406 -13.34419 -13.12000 -12.51602 -12.33071 -12.28144 -12.18211 -11.88154 -11.63670 -11.36693 -11.14473 -10.41338 -10.33307 -10.10475 -9.97466 -9.65048 -9.62220 -9.22463 -9.11755 -8.63105 -8.63067 -8.10276 -6.51756 -3.93826 0.29566 0.93366 1.36125 2.43881 2.78400 3.09983 3.22310 3.28957 3.37458 3.74809 3.78396 4.07924 4.30657 4.54344 4.62703 4.64639 4.66620 4.89854 4.97365 5.00800 5.10697 5.17047 5.25784 5.41239 5.63866 5.67963 5.82148 5.91738 6.00257 6.07846 6.41707 6.73534 7.04353 7.36522 7.45938 7.92381 8.20373 8.44808 8.76481 9.04452 9.39348 9.87057 10.65184 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.055701 B = 0.001750 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.566028 B =15993.929823 C =16148.618810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.042 3.958 3 N -0.475 5.475 4 C 0.043 3.957 5 C -0.218 4.218 6 C -0.053 4.053 7 C 0.146 3.854 8 N -0.751 5.751 9 C 0.705 3.295 10 O -0.597 6.597 11 N -0.724 5.724 12 C 0.128 3.872 13 C 0.429 3.571 14 O -0.598 6.598 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.894 5.894 20 Si 0.933 3.067 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 S 0.127 5.873 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.177 0.823 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.397 0.603 34 H 0.407 0.593 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.109 5.712 -13.363 27.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.235 4.235 3 N -0.190 5.190 4 C -0.108 4.108 5 C -0.340 4.340 6 C -0.094 4.094 7 C 0.021 3.979 8 N -0.408 5.408 9 C 0.404 3.596 10 O -0.475 6.475 11 N -0.381 5.381 12 C 0.000 4.000 13 C 0.214 3.786 14 O -0.485 6.485 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.534 5.534 20 Si 0.760 3.240 21 H -0.192 1.192 22 H -0.206 1.206 23 H -0.206 1.206 24 S 0.382 5.618 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.194 0.806 29 H 0.103 0.897 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.231 0.769 34 H 0.244 0.756 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.752 5.211 -12.940 27.545 hybrid contribution 1.770 0.360 -0.224 1.820 sum -21.982 5.571 -13.164 26.221 Atomic orbital electron populations 1.20455 0.85172 1.04355 1.03900 1.27066 1.01888 0.91093 1.03503 1.66298 1.04924 1.31637 1.16121 1.21753 0.91132 0.95892 1.02020 1.25692 0.99406 0.96277 1.12590 1.20208 0.88993 1.02697 0.97467 1.21107 0.81442 1.00329 0.95047 1.44983 1.14847 1.73395 1.07532 1.15823 0.81359 0.78431 0.83947 1.90917 1.67025 1.59383 1.30213 1.44762 1.12194 1.70595 1.10552 1.20791 0.92112 1.01809 0.85306 1.19762 0.86878 0.85665 0.86253 1.90488 1.76902 1.59795 1.21316 1.41794 1.12390 1.56470 1.07751 1.19781 0.87809 1.40739 0.95109 0.87625 1.25329 1.00548 0.97271 0.94603 1.69628 1.37491 1.47925 0.98388 0.85751 0.81210 0.78233 0.78843 1.19155 1.20621 1.20629 1.84077 0.97538 1.12101 1.68115 0.89571 0.90009 0.89203 0.80632 0.89652 0.88731 0.91203 0.91487 0.76875 0.75576 0.89989 0.90004 0.77006 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.46 36.00 0.38 -0.01 16 2 C 0.04 0.34 7.39 -13.46 -0.10 0.24 16 3 N -0.48 -4.84 10.54 -11.86 -0.13 -4.96 16 4 C 0.04 0.39 11.25 -19.18 -0.22 0.17 16 5 C -0.22 -1.77 5.85 -35.92 -0.21 -1.98 16 6 C -0.05 -0.36 5.86 -27.88 -0.16 -0.53 16 7 C 0.15 1.44 5.66 -4.04 -0.02 1.42 16 8 N -0.75 -8.46 5.56 -65.23 -0.36 -8.82 16 9 C 0.70 11.29 8.57 -86.92 -0.74 10.55 16 10 O -0.60 -11.74 16.34 5.29 0.09 -11.65 16 11 N -0.72 -12.00 5.53 -66.41 -0.37 -12.36 16 12 C 0.13 2.38 6.15 -5.20 -0.03 2.35 16 13 C 0.43 9.79 7.85 -10.98 -0.09 9.70 16 14 O -0.60 -15.16 15.24 5.55 0.08 -15.08 16 15 N -0.55 -13.59 5.29 -10.96 -0.06 -13.65 16 16 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 17 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.89 -23.84 13.05 55.50 0.72 -23.12 16 20 Si 0.93 20.46 29.55 -169.99 -5.02 15.43 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 24 S 0.13 0.95 23.18 -107.50 -2.49 -1.54 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.18 1.26 8.06 -52.48 -0.42 0.83 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.37 8.49 -40.82 -0.35 3.02 16 34 H 0.41 6.46 7.45 -40.82 -0.30 6.16 16 35 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.40 9.44 7.90 -40.82 -0.32 9.12 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -33.79 350.47 -8.40 -42.19 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -4.71 Total: 14.18 kcal Atomic # 6 Polarization: 15.52 SS G_CDS: -1.44 Total: 14.08 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -0.19 Total: -62.91 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.17 Total: -26.73 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.79 -8.40 -42.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805221455.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.108 kcal (2) G-P(sol) polarization free energy of solvation -33.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds