Wall clock time and date at job start Fri Apr 10 2020 18:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47186 * 2 1 4 4 C 1.46895 * 111.00009 * 299.99436 * 3 2 1 5 5 C 1.53001 * 109.46933 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47021 * 60.00607 * 5 4 3 7 7 O 1.42897 * 109.47301 * 300.00142 * 5 4 3 8 8 C 1.50700 * 109.46960 * 180.02562 * 5 4 3 9 9 H 1.08000 * 120.00064 * 0.02562 * 8 5 4 10 10 C 1.37881 * 120.00246 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00156 * 179.97438 * 10 8 5 12 12 Si 1.86798 * 119.99594 * 0.02562 * 10 8 5 13 13 H 1.48504 * 109.47346 * 89.99667 * 12 10 8 14 14 H 1.48504 * 109.46883 * 209.99547 * 12 10 8 15 15 H 1.48496 * 109.47257 * 329.99734 * 12 10 8 16 16 C 1.50697 * 109.47194 * 239.99799 * 2 1 3 17 17 N 1.34775 * 120.00136 * 155.00301 * 16 2 1 18 18 O 1.21285 * 119.99891 * 335.00306 * 16 2 1 19 19 C 1.50702 * 109.47005 * 120.00111 * 2 1 3 20 20 C 1.38263 * 119.99356 * 59.99279 * 19 2 1 21 21 C 1.38227 * 120.02488 * 179.72422 * 20 19 2 22 22 C 1.38234 * 120.01430 * 0.28273 * 21 20 19 23 23 C 1.38334 * 119.98337 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.00857 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99478 * 240.27711 * 19 2 1 26 26 H 1.09002 * 109.47604 * 300.00378 * 1 2 3 27 27 H 1.09002 * 109.47268 * 59.99774 * 1 2 3 28 28 H 1.08997 * 109.47736 * 180.02562 * 1 2 3 29 29 H 1.00904 * 110.99857 * 176.04488 * 3 2 1 30 30 H 1.08995 * 109.47626 * 300.00241 * 4 3 2 31 31 H 1.09003 * 109.46772 * 60.00383 * 4 3 2 32 32 H 0.96697 * 114.00264 * 299.99984 * 7 5 4 33 33 H 0.97004 * 119.99764 * 179.97438 * 11 10 8 34 34 H 0.97002 * 119.99993 * 0.02562 * 17 16 2 35 35 H 0.96998 * 119.99995 * 179.97438 * 17 16 2 36 36 H 1.08002 * 119.98986 * 0.02562 * 20 19 2 37 37 H 1.08002 * 119.98919 * 180.30242 * 21 20 19 38 38 H 1.07993 * 120.00600 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.00565 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5487 2.1098 -1.1877 5 6 2.0773 3.5452 -1.1520 6 1 3.1672 3.5309 -1.1435 7 8 1.6003 4.1993 0.0255 8 6 1.5937 4.2890 -2.3702 9 1 0.9713 3.7882 -3.0969 10 6 1.9450 5.6092 -2.5564 11 7 1.5234 6.2581 -3.6197 12 14 3.0210 6.4756 -1.2991 13 1 4.4494 6.3021 -1.6664 14 1 2.6881 7.9226 -1.2759 15 1 2.7810 5.8909 0.0447 16 6 2.0323 -0.7104 -1.2304 17 7 3.2543 -0.4247 -1.7219 18 8 1.3369 -1.5394 -1.7784 19 6 2.0322 -0.7104 1.2305 20 6 1.6980 -2.0341 1.4492 21 6 2.1631 -2.6881 2.5747 22 6 2.9579 -2.0172 3.4853 23 6 3.2882 -0.6913 3.2696 24 17 4.2868 0.1516 4.4124 25 6 2.8220 -0.0371 2.1429 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.0262 1.4126 0.0650 30 1 1.9122 1.6106 -2.0859 31 1 0.4588 2.1245 -1.1960 32 1 0.6364 4.2487 0.0849 33 1 1.7703 7.1871 -3.7505 34 1 3.8106 0.2380 -1.2834 35 1 3.5777 -0.8822 -2.5136 36 1 1.0773 -2.5588 0.7379 37 1 1.9057 -3.7234 2.7425 38 1 3.3208 -2.5281 4.3647 39 1 3.0795 0.9981 1.9741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000809576065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:23 Heat of formation + Delta-G solvation = -59.324530 kcal Electronic energy + Delta-G solvation = -24176.612183 eV Core-core repulsion = 20531.195634 eV Total energy + Delta-G solvation = -3645.416550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.103 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.83711 -38.92810 -37.03150 -36.56814 -35.30561 -33.57688 -32.28178 -31.77271 -31.00778 -29.28160 -28.00101 -25.32922 -23.73424 -22.59722 -22.39533 -20.67576 -19.51391 -17.91331 -17.53455 -17.27738 -16.79775 -15.85313 -15.46380 -15.08027 -14.93921 -14.58998 -14.35184 -14.15828 -14.02678 -13.63930 -13.59947 -13.31293 -12.79975 -12.33283 -12.26129 -12.00427 -11.73659 -11.64194 -11.54772 -11.43695 -11.26456 -10.97152 -10.93397 -10.41765 -10.26160 -9.97988 -9.72067 -9.13088 -9.07985 -8.87650 -8.67432 -8.38431 -8.17223 -6.17723 -4.30263 0.93147 1.06438 1.97708 2.56255 3.28697 3.34891 3.45855 3.52487 3.72056 4.05311 4.46280 4.49057 4.66472 4.79159 4.89352 5.03011 5.06944 5.17212 5.28266 5.41705 5.67811 5.74887 5.78086 5.85789 5.89032 5.97838 6.08459 6.12645 6.23664 6.29204 6.52927 6.57659 6.67994 6.98147 7.15092 7.23310 7.41972 7.56281 8.16078 8.23771 8.78146 9.03281 9.46222 10.92750 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.004466 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.787237 B = 6268.310069 C = 7658.047218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.141 3.859 3 N -0.661 5.661 4 C 0.032 3.968 5 C 0.203 3.797 6 H 0.050 0.950 7 O -0.571 6.571 8 C -0.568 4.568 9 H 0.071 0.929 10 C 0.085 3.915 11 N -0.892 5.892 12 Si 0.871 3.129 13 H -0.289 1.289 14 H -0.296 1.296 15 H -0.215 1.215 16 C 0.502 3.498 17 N -0.851 5.851 18 O -0.541 6.541 19 C -0.061 4.061 20 C -0.104 4.104 21 C -0.109 4.109 22 C -0.112 4.112 23 C -0.036 4.036 24 Cl -0.071 7.071 25 C -0.087 4.087 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.336 0.664 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.357 0.643 33 H 0.265 0.735 34 H 0.400 0.600 35 H 0.402 0.598 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.964 -16.756 13.179 21.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.045 3.955 3 N -0.294 5.294 4 C -0.096 4.096 5 C 0.145 3.855 6 H 0.068 0.932 7 O -0.376 6.376 8 C -0.605 4.605 9 H 0.089 0.911 10 C -0.120 4.120 11 N -0.528 5.528 12 Si 0.698 3.302 13 H -0.216 1.216 14 H -0.223 1.223 15 H -0.137 1.137 16 C 0.284 3.716 17 N -0.415 5.415 18 O -0.416 6.416 19 C -0.062 4.062 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.063 4.063 24 Cl -0.042 7.042 25 C -0.106 4.106 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.203 0.797 33 H 0.075 0.925 34 H 0.229 0.771 35 H 0.233 0.767 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.592 -16.737 13.483 21.790 hybrid contribution 1.100 0.356 -0.613 1.308 sum 4.692 -16.381 12.871 21.355 Atomic orbital electron populations 1.21739 0.89992 1.02820 1.03612 1.20085 0.98076 0.88442 0.88861 1.60767 1.15648 1.09130 1.43847 1.22944 1.01498 0.96883 0.88320 1.19660 0.94594 0.86311 0.84969 0.93194 1.86654 1.25267 1.80385 1.45279 1.21452 1.34834 0.97243 1.07004 0.91090 1.24984 0.94789 0.97275 0.94948 1.69957 1.44474 1.10896 1.27501 0.87028 0.79430 0.78040 0.85744 1.21556 1.22273 1.13683 1.21596 0.81287 0.82278 0.86421 1.43901 1.18610 1.45618 1.33376 1.90706 1.56038 1.33968 1.60899 1.19408 0.97780 0.93690 0.95301 1.21207 0.99291 0.94019 0.97733 1.21044 0.97649 1.00112 0.93958 1.21075 0.98940 0.92779 1.00257 1.20915 0.98708 0.93347 0.93309 1.98378 1.68076 1.77956 1.59796 1.21079 0.96265 1.01265 0.91946 0.90619 0.91207 0.91303 0.84421 0.94532 0.90348 0.79724 0.92522 0.77145 0.76704 0.85012 0.85049 0.85113 0.83141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.65 7.58 37.15 0.28 -1.37 16 2 C 0.14 1.84 0.74 -133.91 -0.10 1.74 16 3 N -0.66 -9.28 4.80 -102.33 -0.49 -9.77 16 4 C 0.03 0.55 4.54 -3.83 -0.02 0.53 16 5 C 0.20 4.30 2.52 -27.88 -0.07 4.23 16 6 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 7 O -0.57 -12.01 10.01 -35.23 -0.35 -12.37 16 8 C -0.57 -14.98 9.34 -34.44 -0.32 -15.30 16 9 H 0.07 2.05 7.99 -52.49 -0.42 1.63 16 10 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 11 N -0.89 -26.59 13.96 55.43 0.77 -25.82 16 12 Si 0.87 21.03 26.99 -169.99 -4.59 16.44 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.21 -5.03 5.31 56.52 0.30 -4.73 16 16 C 0.50 7.07 5.37 -10.99 -0.06 7.02 16 17 N -0.85 -9.69 8.02 31.22 0.25 -9.44 16 18 O -0.54 -9.23 16.93 5.55 0.09 -9.13 16 19 C -0.06 -0.72 4.76 -104.63 -0.50 -1.21 16 20 C -0.10 -1.13 8.82 -39.58 -0.35 -1.47 16 21 C -0.11 -1.00 10.05 -39.59 -0.40 -1.40 16 22 C -0.11 -1.05 9.83 -39.55 -0.39 -1.44 16 23 C -0.04 -0.39 6.32 -39.50 -0.25 -0.64 16 24 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.26 16 25 C -0.09 -1.01 8.92 -39.55 -0.35 -1.36 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16 28 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 29 H 0.34 4.31 6.16 -39.29 -0.24 4.07 16 30 H 0.04 0.66 6.57 -51.93 -0.34 0.32 16 31 H 0.08 1.42 6.30 -51.93 -0.33 1.10 16 32 H 0.36 6.85 9.04 45.56 0.41 7.26 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.40 3.95 7.31 -40.82 -0.30 3.65 16 35 H 0.40 4.07 8.93 -40.82 -0.36 3.71 16 36 H 0.13 1.44 7.58 -52.49 -0.40 1.04 16 37 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.15 1.82 6.41 -52.49 -0.34 1.49 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -31.80 333.39 -7.33 -39.12 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -3.92 Total: 16.62 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.62 Total: -8.42 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.53 Total: -45.03 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.26 Total: -21.50 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.59 Total: 16.44 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.80 -7.33 -39.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.201 kcal (2) G-P(sol) polarization free energy of solvation -31.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds