Wall clock time and date at job start Fri Apr 10 2020 18:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46897 * 109.47186 * 2 1 4 4 C 1.46895 * 111.00009 * 299.99436 * 3 2 1 5 5 C 1.53001 * 109.46933 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47021 * 60.00607 * 5 4 3 7 7 O 1.42897 * 109.47301 * 300.00142 * 5 4 3 8 8 C 1.50700 * 109.46960 * 180.02562 * 5 4 3 9 9 H 1.08000 * 120.00064 * 0.02562 * 8 5 4 10 10 C 1.37881 * 120.00246 * 179.97438 * 8 5 4 11 11 N 1.31511 * 120.00156 * 179.97438 * 10 8 5 12 12 Si 1.86798 * 119.99594 * 0.02562 * 10 8 5 13 13 H 1.48504 * 109.47346 * 89.99667 * 12 10 8 14 14 H 1.48504 * 109.46883 * 209.99547 * 12 10 8 15 15 H 1.48496 * 109.47257 * 329.99734 * 12 10 8 16 16 C 1.50697 * 109.47194 * 239.99799 * 2 1 3 17 17 N 1.34775 * 120.00136 * 155.00301 * 16 2 1 18 18 O 1.21285 * 119.99891 * 335.00306 * 16 2 1 19 19 C 1.50702 * 109.47005 * 120.00111 * 2 1 3 20 20 C 1.38263 * 119.99356 * 59.99279 * 19 2 1 21 21 C 1.38227 * 120.02488 * 179.72422 * 20 19 2 22 22 C 1.38234 * 120.01430 * 0.28273 * 21 20 19 23 23 C 1.38334 * 119.98337 * 359.97438 * 22 21 20 24 24 Cl 1.73598 * 120.00857 * 180.02562 * 23 22 21 25 25 C 1.38190 * 119.99478 * 240.27711 * 19 2 1 26 26 H 1.09002 * 109.47604 * 300.00378 * 1 2 3 27 27 H 1.09002 * 109.47268 * 59.99774 * 1 2 3 28 28 H 1.08997 * 109.47736 * 180.02562 * 1 2 3 29 29 H 1.00904 * 110.99857 * 176.04488 * 3 2 1 30 30 H 1.08995 * 109.47626 * 300.00241 * 4 3 2 31 31 H 1.09003 * 109.46772 * 60.00383 * 4 3 2 32 32 H 0.96697 * 114.00264 * 299.99984 * 7 5 4 33 33 H 0.97004 * 119.99764 * 179.97438 * 11 10 8 34 34 H 0.97002 * 119.99993 * 0.02562 * 17 16 2 35 35 H 0.96998 * 119.99995 * 179.97438 * 17 16 2 36 36 H 1.08002 * 119.98986 * 0.02562 * 20 19 2 37 37 H 1.08002 * 119.98919 * 180.30242 * 21 20 19 38 38 H 1.07993 * 120.00600 * 179.97438 * 22 21 20 39 39 H 1.08002 * 120.00565 * 359.97438 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5487 2.1098 -1.1877 5 6 2.0773 3.5452 -1.1520 6 1 3.1672 3.5309 -1.1435 7 8 1.6003 4.1993 0.0255 8 6 1.5937 4.2890 -2.3702 9 1 0.9713 3.7882 -3.0969 10 6 1.9450 5.6092 -2.5564 11 7 1.5234 6.2581 -3.6197 12 14 3.0210 6.4756 -1.2991 13 1 4.4494 6.3021 -1.6664 14 1 2.6881 7.9226 -1.2759 15 1 2.7810 5.8909 0.0447 16 6 2.0323 -0.7104 -1.2304 17 7 3.2543 -0.4247 -1.7219 18 8 1.3369 -1.5394 -1.7784 19 6 2.0322 -0.7104 1.2305 20 6 1.6980 -2.0341 1.4492 21 6 2.1631 -2.6881 2.5747 22 6 2.9579 -2.0172 3.4853 23 6 3.2882 -0.6913 3.2696 24 17 4.2868 0.1516 4.4124 25 6 2.8220 -0.0371 2.1429 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.0262 1.4126 0.0650 30 1 1.9122 1.6106 -2.0859 31 1 0.4588 2.1245 -1.1960 32 1 0.6364 4.2487 0.0849 33 1 1.7703 7.1871 -3.7505 34 1 3.8106 0.2380 -1.2834 35 1 3.5777 -0.8822 -2.5136 36 1 1.0773 -2.5588 0.7379 37 1 1.9057 -3.7234 2.7425 38 1 3.3208 -2.5281 4.3647 39 1 3.0795 0.9981 1.9741 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000809576065.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:09:22 Heat of formation + Delta-G solvation = -84.663490 kcal Electronic energy + Delta-G solvation = -24177.710963 eV Core-core repulsion = 20531.195634 eV Total energy + Delta-G solvation = -3646.515329 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.103 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.88197 -39.84052 -38.48957 -37.45834 -36.65232 -34.61260 -34.37716 -32.93875 -31.82216 -30.43250 -29.51614 -26.78725 -25.00988 -23.57869 -23.28213 -22.28190 -20.59006 -19.32748 -18.85354 -18.48531 -17.92415 -16.84084 -16.81560 -16.37118 -16.18199 -16.06216 -15.66602 -15.34334 -15.17516 -14.91826 -14.71626 -14.53550 -14.28060 -13.57958 -13.43911 -13.31590 -13.00508 -12.92347 -12.81858 -12.60214 -12.46092 -12.28468 -12.17697 -11.83248 -11.70622 -11.39337 -11.05679 -10.78213 -10.77336 -10.10551 -9.91375 -9.71320 -9.44195 -8.32775 -6.48285 0.12018 0.26961 1.16855 1.43286 1.46502 1.50531 1.80162 2.33014 2.46573 2.65504 2.90234 3.06649 3.49830 3.76973 3.88584 4.02341 4.11473 4.16636 4.24385 4.32360 4.45931 4.49937 4.59603 4.72048 4.79039 4.95912 5.00041 5.17702 5.22875 5.34091 5.42627 5.46043 5.52262 5.69118 5.77658 5.87266 6.10181 6.15395 6.32095 6.65332 7.12747 7.24805 7.40061 8.81535 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.014387 B = 0.004466 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.787237 B = 6268.310069 C = 7658.047218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.147 3.853 3 N -0.651 5.651 4 C 0.049 3.951 5 C 0.211 3.789 6 H 0.058 0.942 7 O -0.571 6.571 8 C -0.566 4.566 9 H 0.031 0.969 10 C 0.028 3.972 11 N -0.942 5.942 12 Si 0.940 3.060 13 H -0.284 1.284 14 H -0.304 1.304 15 H -0.199 1.199 16 C 0.498 3.502 17 N -0.839 5.839 18 O -0.575 6.575 19 C -0.068 4.068 20 C -0.111 4.111 21 C -0.101 4.101 22 C -0.107 4.107 23 C -0.044 4.044 24 Cl -0.071 7.071 25 C -0.094 4.094 26 H 0.081 0.919 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.346 0.654 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.366 0.634 33 H 0.266 0.734 34 H 0.408 0.592 35 H 0.409 0.591 36 H 0.129 0.871 37 H 0.160 0.840 38 H 0.154 0.846 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.210 -18.070 15.686 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 N -0.285 5.285 4 C -0.079 4.079 5 C 0.152 3.848 6 H 0.076 0.924 7 O -0.377 6.377 8 C -0.604 4.604 9 H 0.050 0.950 10 C -0.171 4.171 11 N -0.582 5.582 12 Si 0.765 3.235 13 H -0.210 1.210 14 H -0.231 1.231 15 H -0.120 1.120 16 C 0.281 3.719 17 N -0.403 5.403 18 O -0.453 6.453 19 C -0.069 4.069 20 C -0.130 4.130 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.070 4.070 24 Cl -0.043 7.043 25 C -0.113 4.113 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.167 0.833 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.214 0.786 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.241 0.759 36 H 0.147 0.853 37 H 0.178 0.822 38 H 0.171 0.829 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.868 -18.060 16.006 24.618 hybrid contribution 0.678 0.677 -1.402 1.698 sum 5.546 -17.383 14.604 23.371 Atomic orbital electron populations 1.21724 0.90393 1.03029 1.02944 1.20001 0.97816 0.87542 0.89420 1.60634 1.16434 1.09787 1.41662 1.22523 1.00806 0.95163 0.89458 1.19466 0.94855 0.87641 0.82810 0.92433 1.86587 1.26254 1.80493 1.44338 1.21814 1.33339 0.97322 1.07936 0.95043 1.25872 0.96266 0.98301 0.96685 1.70098 1.46812 1.11363 1.29896 0.85974 0.77559 0.76214 0.83793 1.21046 1.23109 1.12039 1.21783 0.81646 0.81965 0.86503 1.43824 1.17883 1.45293 1.33333 1.90691 1.57104 1.35600 1.61871 1.19236 0.98757 0.94150 0.94806 1.21285 0.99525 0.93689 0.98460 1.21349 0.96482 1.01291 0.92781 1.21375 0.98120 0.92183 1.00841 1.21028 0.98886 0.93996 0.93139 1.98379 1.68081 1.78111 1.59686 1.20998 0.96775 1.01050 0.92468 0.90039 0.92978 0.90740 0.83266 0.95241 0.91239 0.78645 0.92558 0.76100 0.75878 0.85348 0.82193 0.82850 0.83808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 7.58 71.98 0.55 -2.68 16 2 C 0.15 3.69 0.74 2.03 0.00 3.70 16 3 N -0.65 -17.37 4.80 -477.67 -2.29 -19.66 16 4 C 0.05 1.69 4.54 86.30 0.39 2.08 16 5 C 0.21 8.69 2.52 29.85 0.08 8.77 16 6 H 0.06 2.33 7.57 -2.39 -0.02 2.32 16 7 O -0.57 -22.79 10.01 -148.98 -1.49 -24.28 16 8 C -0.57 -30.20 9.34 25.60 0.24 -29.96 16 9 H 0.03 1.88 7.99 -2.91 -0.02 1.86 16 10 C 0.03 1.58 5.47 84.66 0.46 2.04 16 11 N -0.94 -57.54 13.96 21.45 0.30 -57.24 16 12 Si 0.94 43.26 26.99 68.60 1.85 45.11 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 14 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 15 H -0.20 -8.57 5.31 99.48 0.53 -8.05 16 16 C 0.50 13.67 5.37 87.66 0.47 14.14 16 17 N -0.84 -18.14 8.02 -173.53 -1.39 -19.53 16 18 O -0.57 -19.46 16.93 -3.05 -0.05 -19.51 16 19 C -0.07 -1.49 4.76 -19.87 -0.09 -1.59 16 20 C -0.11 -2.17 8.82 22.27 0.20 -1.97 16 21 C -0.10 -1.52 10.05 22.27 0.22 -1.29 16 22 C -0.11 -1.65 9.83 22.29 0.22 -1.43 16 23 C -0.04 -0.84 6.32 22.32 0.14 -0.70 16 24 Cl -0.07 -1.36 28.96 -2.72 -0.08 -1.44 16 25 C -0.09 -2.00 8.92 22.29 0.20 -1.80 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 1.53 6.40 -2.39 -0.02 1.51 16 28 H 0.07 1.84 7.12 -2.39 -0.02 1.83 16 29 H 0.35 8.19 6.16 -89.69 -0.55 7.63 16 30 H 0.03 1.05 6.57 -2.39 -0.02 1.04 16 31 H 0.07 2.53 6.30 -2.39 -0.02 2.51 16 32 H 0.37 13.43 9.04 -74.06 -0.67 12.76 16 33 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 34 H 0.41 7.39 7.31 -92.71 -0.68 6.71 16 35 H 0.41 7.84 8.93 -92.71 -0.83 7.02 16 36 H 0.13 2.61 7.58 -2.91 -0.02 2.58 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.14 3.20 6.41 -2.91 -0.02 3.19 16 Total: -1.00 -68.55 333.39 -1.85 -70.40 By element: Atomic # 1 Polarization: 38.63 SS G_CDS: -1.77 Total: 36.86 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 3.07 Total: -10.70 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -3.39 Total: -96.43 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -1.54 Total: -43.79 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.85 Total: 45.11 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -68.55 -1.85 -70.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000809576065.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.267 kcal (2) G-P(sol) polarization free energy of solvation -68.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds