Wall clock time and date at job start Fri Apr 10 2020 18:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48501 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46499 * 299.99566 * 3 2 1 6 6 H 1.48493 * 109.47315 * 59.99593 * 3 2 1 7 7 C 1.37875 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00113 * 0.02562 * 7 2 1 10 10 N 1.46491 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00172 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00217 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47311 * 180.02562 * 13 11 10 15 15 C 1.47843 * 110.99640 * 69.15748 * 14 13 11 16 16 C 1.54916 * 104.79337 * 146.36598 * 15 14 13 17 17 C 1.55398 * 101.74107 * 323.02060 * 16 15 14 18 18 H 1.09005 * 110.67856 * 277.17709 * 17 16 15 19 19 N 1.46495 * 110.84661 * 153.86291 * 17 16 15 20 20 C 1.35048 * 126.03709 * 331.17920 * 19 17 16 21 21 C 1.35373 * 107.72729 * 179.84039 * 20 19 17 22 22 Cl 1.73600 * 126.04239 * 180.16160 * 21 20 19 23 23 C 1.39932 * 107.90696 * 0.42277 * 21 20 19 24 24 N 1.30849 * 108.21486 * 359.73682 * 23 21 20 25 25 C 1.47439 * 111.00045 * 190.00457 * 14 13 11 26 26 H 0.96997 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47159 * 59.99921 * 9 7 2 28 28 H 1.08995 * 109.46848 * 300.00241 * 9 7 2 29 29 H 0.97002 * 120.00282 * 359.97438 * 10 9 7 30 30 H 1.09006 * 109.46901 * 60.00378 * 13 11 10 31 31 H 1.08995 * 109.47570 * 300.00103 * 13 11 10 32 32 H 1.08996 * 110.37823 * 265.19398 * 15 14 13 33 33 H 1.09002 * 110.37399 * 27.53914 * 15 14 13 34 34 H 1.08995 * 110.98807 * 81.01940 * 16 15 14 35 35 H 1.08997 * 110.99076 * 204.80412 * 16 15 14 36 36 H 1.07998 * 126.13398 * 359.97438 * 20 19 17 37 37 H 1.07998 * 125.89005 * 179.75786 * 23 21 20 38 38 H 1.09002 * 109.88998 * 356.14887 * 25 14 13 39 39 H 1.09003 * 109.88733 * 117.17548 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5614 -5.1050 -0.0003 13 6 2.7331 -6.0288 0.0022 14 7 1.9987 -7.3010 0.0010 15 6 1.3098 -7.5139 -1.2897 16 6 1.3525 -9.0463 -1.5128 17 6 2.7536 -9.4094 -0.9471 18 1 3.5278 -9.2322 -1.6936 19 7 2.7853 -10.7994 -0.4856 20 6 1.7342 -11.5042 -0.0143 21 6 2.1773 -12.7439 0.3011 22 17 1.2170 -14.0387 0.9452 23 6 3.5475 -12.7950 0.0217 24 7 3.9125 -11.6303 -0.4498 25 6 2.9082 -8.4364 0.2408 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5572 -0.8896 28 1 0.6241 -2.5567 0.8902 29 1 3.1567 -3.4354 0.0021 30 1 3.3591 -5.9710 0.8927 31 1 3.3604 -5.9711 -0.8873 32 1 0.2780 -7.1676 -1.2309 33 1 1.8388 -6.9988 -2.0916 34 1 0.5647 -9.5451 -0.9483 35 1 1.2835 -9.2886 -2.5732 36 1 0.7214 -11.1442 0.0901 37 1 4.1924 -13.6487 0.1693 38 1 3.9372 -8.0816 0.2980 39 1 2.6372 -8.9389 1.1694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810133339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:12 Heat of formation + Delta-G solvation = 48.368665 kcal Electronic energy + Delta-G solvation = -22630.201095 eV Core-core repulsion = 19021.747223 eV Total energy + Delta-G solvation = -3608.453871 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75615 -39.64790 -38.10767 -36.68536 -34.26441 -33.68937 -32.36892 -30.85039 -30.41720 -28.75317 -27.72854 -25.89760 -23.06652 -22.64356 -21.81051 -21.06028 -20.43399 -19.71710 -18.04957 -17.35769 -16.30888 -15.94282 -15.43207 -15.20915 -15.10915 -14.94810 -14.85956 -14.16989 -14.05694 -13.63601 -13.55922 -13.30872 -12.88309 -12.50780 -12.37986 -12.19958 -11.97336 -11.80517 -11.72952 -11.70610 -11.45243 -11.14436 -10.97983 -10.91575 -10.82552 -10.35101 -9.91791 -9.41794 -9.12574 -8.82140 -8.77507 -8.40753 -7.91527 -6.20395 -4.27424 1.35846 1.57872 2.23048 2.40427 3.20609 3.27716 3.30488 3.31576 3.51174 3.87114 4.06060 4.24698 4.32674 4.35875 4.49064 4.51910 4.76666 4.92060 5.01435 5.15706 5.17372 5.23433 5.28037 5.31635 5.40476 5.51119 5.54709 5.64848 5.95495 6.00677 6.45391 6.69582 6.71932 7.17256 7.27376 7.39865 7.47933 7.63279 7.93258 8.58478 8.74903 9.06730 9.39500 10.89783 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.043620 B = 0.002028 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.759526 B =13803.473156 C =14070.996075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.538 6.538 13 C 0.028 3.972 14 N -0.503 5.503 15 C 0.051 3.949 16 C -0.139 4.139 17 C 0.140 3.860 18 H 0.114 0.886 19 N -0.351 5.351 20 C 0.081 3.919 21 C -0.192 4.192 22 Cl -0.044 7.044 23 C 0.063 3.937 24 N -0.283 5.283 25 C 0.034 3.966 26 H 0.265 0.735 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.389 0.611 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.184 0.816 37 H 0.191 0.809 38 H 0.070 0.930 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -24.577 -1.925 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.104 4.104 14 N -0.228 5.228 15 C -0.077 4.077 16 C -0.178 4.178 17 C 0.037 3.963 18 H 0.132 0.868 19 N -0.132 5.132 20 C -0.067 4.067 21 C -0.230 4.230 22 Cl -0.016 7.016 23 C -0.124 4.124 24 N -0.103 5.103 25 C -0.095 4.095 26 H 0.075 0.925 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.222 0.778 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.201 0.799 37 H 0.208 0.792 38 H 0.088 0.912 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.466 -23.796 -1.970 24.737 hybrid contribution 0.780 0.426 -0.187 0.908 sum 7.246 -23.370 -2.157 24.562 Atomic orbital electron populations 1.69981 1.06100 1.27228 1.48911 1.24960 0.94927 0.99490 0.94699 0.86360 0.79809 0.82955 0.77778 1.19649 1.20802 1.20766 1.21263 0.93292 0.90462 1.53171 0.91865 1.19089 0.88251 0.81879 0.97711 1.46452 1.11108 1.06079 1.72777 1.20198 0.89485 0.84009 0.78066 1.90652 1.16522 1.84612 1.49799 1.22334 0.95571 0.89625 1.02851 1.63347 1.26289 1.00076 1.33038 1.23102 1.02489 0.92814 0.89283 1.23269 0.94637 0.97590 1.02282 1.22764 1.00684 0.75503 0.97386 0.86789 1.48456 1.05573 1.10819 1.48346 1.22242 0.95242 0.91187 0.97989 1.20752 0.93186 0.92010 1.17076 1.98331 1.70697 1.47294 1.85312 1.23883 0.93542 0.96581 0.98358 1.77506 1.08029 1.01549 1.23264 1.23293 0.96895 0.91431 0.97873 0.92473 0.95601 0.95519 0.77819 0.88119 0.91973 0.87574 0.92926 0.89314 0.89267 0.79892 0.79232 0.91196 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.54 -14.47 9.28 -34.44 -0.32 -14.79 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.50 5.43 -5.19 -0.03 6.47 16 10 N -0.71 -14.34 5.55 -61.48 -0.34 -14.68 16 11 C 0.50 9.32 7.63 -10.99 -0.08 9.23 16 12 O -0.54 -12.22 15.04 5.55 0.08 -12.13 16 13 C 0.03 0.36 5.05 -4.97 -0.03 0.33 16 14 N -0.50 -6.24 4.86 -232.68 -1.13 -7.37 16 15 C 0.05 0.57 5.75 -2.29 -0.01 0.56 16 16 C -0.14 -1.13 6.44 -24.45 -0.16 -1.29 16 17 C 0.14 1.20 4.10 -65.97 -0.27 0.93 16 18 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 19 N -0.35 -3.34 3.57 -52.92 -0.19 -3.53 16 20 C 0.08 0.72 10.56 -17.16 -0.18 0.54 16 21 C -0.19 -1.73 6.65 -39.97 -0.27 -2.00 16 22 Cl -0.04 -0.37 29.30 -51.86 -1.52 -1.89 16 23 C 0.06 0.57 12.02 -17.34 -0.21 0.36 16 24 N -0.28 -3.01 12.57 30.64 0.39 -2.62 16 25 C 0.03 0.33 6.61 -2.84 -0.02 0.31 16 26 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.39 6.61 8.32 -40.82 -0.34 6.27 16 30 H 0.10 1.13 8.03 -51.93 -0.42 0.71 16 31 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 32 H 0.11 1.47 7.38 -51.93 -0.38 1.09 16 33 H 0.05 0.57 7.62 -51.93 -0.40 0.18 16 34 H 0.09 0.69 6.27 -51.93 -0.33 0.36 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.18 1.26 6.81 -52.49 -0.36 0.91 16 37 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 38 H 0.07 0.61 7.55 -51.93 -0.39 0.22 16 39 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -32.59 344.41 -8.56 -41.15 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.08 Total: 3.09 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -1.67 Total: 2.28 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.54 Total: -53.22 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.59 -8.56 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810133339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.514 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds