Wall clock time and date at job start Fri Apr 10 2020 18:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00000 * 2 1 4 4 H 1.48501 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46499 * 299.99566 * 3 2 1 6 6 H 1.48493 * 109.47315 * 59.99593 * 3 2 1 7 7 C 1.37875 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00372 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00113 * 0.02562 * 7 2 1 10 10 N 1.46491 * 109.47277 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00172 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00217 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47311 * 180.02562 * 13 11 10 15 15 C 1.47843 * 110.99640 * 69.15748 * 14 13 11 16 16 C 1.54916 * 104.79337 * 146.36598 * 15 14 13 17 17 C 1.55398 * 101.74107 * 323.02060 * 16 15 14 18 18 H 1.09005 * 110.67856 * 277.17709 * 17 16 15 19 19 N 1.46495 * 110.84661 * 153.86291 * 17 16 15 20 20 C 1.35048 * 126.03709 * 331.17920 * 19 17 16 21 21 C 1.35373 * 107.72729 * 179.84039 * 20 19 17 22 22 Cl 1.73600 * 126.04239 * 180.16160 * 21 20 19 23 23 C 1.39932 * 107.90696 * 0.42277 * 21 20 19 24 24 N 1.30849 * 108.21486 * 359.73682 * 23 21 20 25 25 C 1.47439 * 111.00045 * 190.00457 * 14 13 11 26 26 H 0.96997 * 120.00156 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47159 * 59.99921 * 9 7 2 28 28 H 1.08995 * 109.46848 * 300.00241 * 9 7 2 29 29 H 0.97002 * 120.00282 * 359.97438 * 10 9 7 30 30 H 1.09006 * 109.46901 * 60.00378 * 13 11 10 31 31 H 1.08995 * 109.47570 * 300.00103 * 13 11 10 32 32 H 1.08996 * 110.37823 * 265.19398 * 15 14 13 33 33 H 1.09002 * 110.37399 * 27.53914 * 15 14 13 34 34 H 1.08995 * 110.98807 * 81.01940 * 16 15 14 35 35 H 1.08997 * 110.99076 * 204.80412 * 16 15 14 36 36 H 1.07998 * 126.13398 * 359.97438 * 20 19 17 37 37 H 1.07998 * 125.89005 * 179.75786 * 23 21 20 38 38 H 1.09002 * 109.88998 * 356.14887 * 25 14 13 39 39 H 1.09003 * 109.88733 * 117.17548 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 1.7538 -4.8833 0.0015 12 8 0.5614 -5.1050 -0.0003 13 6 2.7331 -6.0288 0.0022 14 7 1.9987 -7.3010 0.0010 15 6 1.3098 -7.5139 -1.2897 16 6 1.3525 -9.0463 -1.5128 17 6 2.7536 -9.4094 -0.9471 18 1 3.5278 -9.2322 -1.6936 19 7 2.7853 -10.7994 -0.4856 20 6 1.7342 -11.5042 -0.0143 21 6 2.1773 -12.7439 0.3011 22 17 1.2170 -14.0387 0.9452 23 6 3.5475 -12.7950 0.0217 24 7 3.9125 -11.6303 -0.4498 25 6 2.9082 -8.4364 0.2408 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5572 -0.8896 28 1 0.6241 -2.5567 0.8902 29 1 3.1567 -3.4354 0.0021 30 1 3.3591 -5.9710 0.8927 31 1 3.3604 -5.9711 -0.8873 32 1 0.2780 -7.1676 -1.2309 33 1 1.8388 -6.9988 -2.0916 34 1 0.5647 -9.5451 -0.9483 35 1 1.2835 -9.2886 -2.5732 36 1 0.7214 -11.1442 0.0901 37 1 4.1924 -13.6487 0.1693 38 1 3.9372 -8.0816 0.2980 39 1 2.6372 -8.9389 1.1694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810133339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:11 Heat of formation + Delta-G solvation = 24.184133 kcal Electronic energy + Delta-G solvation = -22631.249815 eV Core-core repulsion = 19021.747223 eV Total energy + Delta-G solvation = -3609.502591 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.109 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.43935 -40.84272 -39.34259 -37.34842 -36.10204 -34.59592 -34.30907 -31.72150 -31.10415 -29.89860 -29.12273 -27.20598 -24.54313 -23.71088 -22.66319 -21.94569 -21.28772 -21.09891 -19.03554 -18.70534 -17.64320 -17.33878 -16.79739 -16.48479 -16.13657 -15.96059 -15.76311 -15.48523 -15.08531 -14.78640 -14.51564 -14.26766 -14.04083 -13.99977 -13.67183 -13.49996 -13.08613 -12.88831 -12.84160 -12.70135 -12.51006 -12.41027 -12.36074 -12.22140 -11.91874 -11.50122 -11.45142 -10.81333 -10.71513 -10.58051 -9.79978 -9.54196 -9.29475 -8.29372 -6.45631 0.67820 0.91699 1.43219 1.44003 1.56807 1.57389 1.73347 1.82097 2.26750 2.45369 3.00803 3.05694 3.18857 3.44617 3.69145 3.77861 3.87955 3.96116 4.08845 4.17439 4.22968 4.38364 4.43242 4.53485 4.60257 4.72955 4.79216 4.92047 5.02918 5.12564 5.25818 5.35079 5.50198 5.67828 5.77045 5.82182 5.86271 5.89136 6.49518 6.66390 6.96650 7.24213 7.55089 8.82897 Molecular weight = 312.11amu Principal moments of inertia in cm(-1) A = 0.043620 B = 0.002028 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.759526 B =13803.473156 C =14070.996075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.984 3.016 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.494 3.506 12 O -0.584 6.584 13 C 0.042 3.958 14 N -0.527 5.527 15 C 0.050 3.950 16 C -0.126 4.126 17 C 0.146 3.854 18 H 0.126 0.874 19 N -0.355 5.355 20 C 0.079 3.921 21 C -0.201 4.201 22 Cl -0.042 7.042 23 C 0.064 3.936 24 N -0.308 5.308 25 C 0.041 3.959 26 H 0.268 0.732 27 H -0.013 1.013 28 H -0.015 1.015 29 H 0.408 0.592 30 H 0.126 0.874 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.198 0.802 37 H 0.213 0.787 38 H 0.086 0.914 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -25.251 -2.203 27.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.807 3.193 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.464 6.464 13 C -0.089 4.089 14 N -0.252 5.252 15 C -0.078 4.078 16 C -0.165 4.165 17 C 0.044 3.956 18 H 0.144 0.856 19 N -0.136 5.136 20 C -0.069 4.069 21 C -0.240 4.240 22 Cl -0.014 7.014 23 C -0.123 4.123 24 N -0.129 5.129 25 C -0.087 4.087 26 H 0.077 0.923 27 H 0.005 0.995 28 H 0.003 0.997 29 H 0.243 0.757 30 H 0.144 0.856 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.215 0.785 37 H 0.230 0.770 38 H 0.104 0.896 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.153 -24.509 -2.247 26.259 hybrid contribution -0.117 0.539 -0.071 0.557 sum 9.036 -23.970 -2.318 25.721 Atomic orbital electron populations 1.70142 1.08249 1.28454 1.50119 1.26069 0.95782 1.03925 0.93978 0.85121 0.79133 0.77408 0.77615 1.17578 1.20517 1.20588 1.21667 0.94337 0.90621 1.52587 0.89767 1.18486 0.88662 0.84330 0.93945 1.46183 1.11147 1.05552 1.73321 1.21301 0.89989 0.84671 0.75929 1.90637 1.19148 1.85277 1.51377 1.22239 0.93885 0.87204 1.05524 1.63197 1.27499 1.00636 1.33877 1.22985 1.00557 0.95078 0.89140 1.23181 0.94757 0.95087 1.03472 1.22713 1.00956 0.74985 0.96986 0.85614 1.48493 1.05539 1.10977 1.48612 1.22551 0.95771 0.91217 0.97391 1.20887 0.93459 0.92269 1.17381 1.98332 1.70614 1.47149 1.85280 1.24308 0.93860 0.96799 0.97301 1.77470 1.08745 1.02273 1.24400 1.23208 0.97017 0.90576 0.97911 0.92298 0.99480 0.99740 0.75655 0.85629 0.88708 0.91014 0.92432 0.89069 0.87501 0.78512 0.77019 0.89550 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.98 41.80 29.54 68.60 2.03 43.83 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.55 -29.63 9.28 25.60 0.24 -29.39 16 8 H 0.08 4.05 7.60 -2.91 -0.02 4.02 16 9 C 0.27 14.47 5.43 85.64 0.46 14.93 16 10 N -0.71 -28.63 5.55 -466.80 -2.59 -31.22 16 11 C 0.49 18.53 7.63 87.66 0.67 19.20 16 12 O -0.58 -27.63 15.04 -3.04 -0.05 -27.68 16 13 C 0.04 1.00 5.05 85.56 0.43 1.44 16 14 N -0.53 -12.35 4.86 -890.07 -4.33 -16.68 16 15 C 0.05 1.10 5.75 86.78 0.50 1.60 16 16 C -0.13 -1.85 6.44 32.07 0.21 -1.65 16 17 C 0.15 2.16 4.10 46.27 0.19 2.35 16 18 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 19 N -0.35 -6.06 3.57 -321.34 -1.15 -7.21 16 20 C 0.08 1.26 10.56 83.54 0.88 2.14 16 21 C -0.20 -3.32 6.65 22.02 0.15 -3.17 16 22 Cl -0.04 -0.65 29.30 -2.72 -0.08 -0.73 16 23 C 0.06 1.03 12.02 85.25 1.02 2.05 16 24 N -0.31 -5.95 12.57 -56.98 -0.72 -6.66 16 25 C 0.04 0.71 6.61 86.65 0.57 1.28 16 26 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 27 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 28 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 29 H 0.41 13.26 8.32 -92.71 -0.77 12.48 16 30 H 0.13 2.40 8.03 -2.38 -0.02 2.38 16 31 H 0.10 1.69 7.85 -2.39 -0.02 1.67 16 32 H 0.07 2.08 7.38 -2.39 -0.02 2.07 16 33 H 0.06 1.19 7.62 -2.39 -0.02 1.17 16 34 H 0.09 1.30 6.27 -2.39 -0.01 1.28 16 35 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.20 2.42 6.81 -2.91 -0.02 2.40 16 37 H 0.21 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.09 1.21 7.55 -2.39 -0.02 1.20 16 39 H 0.08 1.50 8.03 -2.39 -0.02 1.48 16 Total: -1.00 -73.64 344.41 -0.50 -74.14 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.31 Total: 16.33 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 5.79 Total: 11.35 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -8.50 Total: -117.24 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: -0.05 Total: -27.68 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -73.64 -0.50 -74.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810133339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.324 kcal (2) G-P(sol) polarization free energy of solvation -73.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds