Wall clock time and date at job start Fri Apr 10 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.32209 * 119.81486 * 2 1 4 4 O 1.21256 * 122.90011 * 359.97438 * 3 2 1 5 5 C 1.51121 * 114.20137 * 180.02562 * 3 2 1 6 6 S 1.82377 * 103.49607 * 359.76049 * 5 3 2 7 7 C 1.36747 * 119.81803 * 179.97438 * 2 1 3 8 8 C 1.36440 * 126.26540 * 359.97438 * 7 2 1 9 9 C 1.40394 * 120.00066 * 180.02562 * 8 7 2 10 10 O 1.21912 * 119.99938 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00243 * 179.72414 * 9 8 7 12 12 C 1.47425 * 125.64785 * 0.29625 * 11 9 8 13 13 C 1.54909 * 104.82972 * 204.09187 * 12 11 9 14 14 C 1.55152 * 101.58563 * 322.98945 * 13 12 11 15 15 O 1.42902 * 110.71936 * 276.96193 * 14 13 12 16 16 C 1.50698 * 110.72021 * 153.86469 * 14 13 12 17 17 H 1.07996 * 120.00431 * 2.79674 * 16 14 13 18 18 C 1.37885 * 119.99585 * 182.79585 * 16 14 13 19 19 N 1.31513 * 120.00172 * 5.89918 * 18 16 14 20 20 Si 1.86800 * 119.99720 * 185.89868 * 18 16 14 21 21 H 1.48502 * 109.46884 * 84.90422 * 20 18 16 22 22 H 1.48495 * 109.47106 * 204.90276 * 20 18 16 23 23 H 1.48498 * 109.47364 * 324.90642 * 20 18 16 24 24 C 1.47023 * 125.64897 * 179.97438 * 11 9 8 25 25 H 1.09001 * 109.46899 * 270.02277 * 1 2 3 26 26 H 1.08994 * 109.47328 * 30.01978 * 1 2 3 27 27 H 1.09004 * 109.47522 * 150.02331 * 1 2 3 28 28 H 1.09004 * 110.61493 * 118.50298 * 5 3 2 29 29 H 1.08998 * 110.61903 * 241.33864 * 5 3 2 30 30 H 1.07998 * 120.00315 * 359.97438 * 8 7 2 31 31 H 1.09005 * 110.36382 * 322.93090 * 12 11 9 32 32 H 1.08994 * 110.36644 * 85.25194 * 12 11 9 33 33 H 1.09000 * 111.00223 * 81.06292 * 13 12 11 34 34 H 1.09001 * 111.00189 * 204.91434 * 13 12 11 35 35 H 0.96703 * 113.99432 * 174.40362 * 15 14 13 36 36 H 0.97004 * 119.99681 * 179.97438 * 19 18 16 37 37 H 1.09005 * 109.88195 * 298.39122 * 24 11 9 38 38 H 1.08998 * 109.88083 * 59.55366 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1223 1.1471 0.0000 4 8 1.5665 2.2247 -0.0005 5 6 3.6263 0.9993 -0.0006 6 16 3.8764 -0.8073 0.0063 7 6 2.1449 -1.1864 0.0005 8 6 1.5918 -2.4337 0.0016 9 6 2.4187 -3.5683 0.0026 10 8 3.6309 -3.4391 0.0020 11 7 1.8723 -4.8003 0.0092 12 6 0.4289 -5.1002 0.0097 13 6 0.3182 -6.5157 0.6291 14 6 1.5789 -7.2093 0.0487 15 8 1.3235 -7.7028 -1.2678 16 6 2.0389 -8.3230 0.9536 17 1 1.4735 -8.5663 1.8410 18 6 3.1817 -9.0316 0.6485 19 7 3.9333 -8.6624 -0.3656 20 14 3.6625 -10.5159 1.6756 21 1 2.9511 -11.7181 1.1715 22 1 5.1285 -10.7312 1.5785 23 1 3.2898 -10.2786 3.0934 24 6 2.6171 -6.0680 0.0105 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 4.0555 1.4465 -0.8973 29 1 4.0565 1.4485 0.8945 30 1 0.5179 -2.5482 0.0025 31 1 -0.1089 -4.3754 0.6211 32 1 0.0412 -5.1004 -1.0089 33 1 0.3631 -6.4706 1.7172 34 1 -0.5911 -7.0171 0.2976 35 1 2.1025 -8.0688 -1.7086 36 1 4.7375 -9.1607 -0.5800 37 1 3.2213 -6.1438 -0.8936 38 1 3.2565 -6.1213 0.8916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824024999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:37 Heat of formation + Delta-G solvation = -73.244063 kcal Electronic energy + Delta-G solvation = -23779.464903 eV Core-core repulsion = 20135.488464 eV Total energy + Delta-G solvation = -3643.976440 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.27433 -39.58129 -37.58005 -36.90980 -34.30364 -32.23577 -31.83319 -31.21892 -30.01872 -27.92366 -27.18031 -25.54238 -23.80077 -22.34279 -20.29159 -19.63980 -19.12168 -18.02421 -17.24395 -16.98201 -16.90251 -16.39633 -15.68365 -15.13769 -14.90296 -14.66577 -14.46556 -14.25137 -14.17211 -13.30110 -13.04052 -12.95914 -12.90380 -12.71669 -12.49134 -12.10383 -11.71930 -11.65102 -11.38598 -11.30664 -11.04782 -10.83977 -10.67572 -10.56043 -10.48215 -10.18706 -9.32390 -9.27313 -9.06790 -8.70122 -8.32179 -8.11059 -7.56922 -6.28466 -4.36789 0.70547 1.05308 1.60647 2.09928 2.31887 3.21749 3.29146 3.31039 3.56947 3.71532 3.88672 4.27709 4.64095 4.71548 4.87088 4.94853 4.98340 5.01334 5.24538 5.35745 5.41725 5.45546 5.71504 5.76725 5.84671 6.00147 6.21640 6.48625 6.52404 6.74543 6.87069 6.99582 7.20117 7.27028 7.39142 7.72769 8.01213 8.22739 8.64412 8.72144 9.27516 9.35464 10.78988 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.003294 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.453808 B = 8498.211214 C = 9121.038392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.546 5.546 3 C 0.526 3.474 4 O -0.497 6.497 5 C -0.198 4.198 6 S 0.037 5.963 7 C 0.164 3.836 8 C -0.232 4.232 9 C 0.561 3.439 10 O -0.547 6.547 11 N -0.604 5.604 12 C 0.101 3.899 13 C -0.118 4.118 14 C 0.247 3.753 15 O -0.584 6.584 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.072 3.928 19 N -0.892 5.892 20 Si 0.903 3.097 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.107 3.893 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.381 0.619 36 H 0.270 0.730 37 H 0.066 0.934 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 15.418 0.175 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.269 5.269 3 C 0.313 3.687 4 O -0.371 6.371 5 C -0.349 4.349 6 S 0.278 5.722 7 C -0.049 4.049 8 C -0.270 4.270 9 C 0.352 3.648 10 O -0.430 6.430 11 N -0.336 5.336 12 C -0.022 4.022 13 C -0.156 4.156 14 C 0.207 3.793 15 O -0.393 6.393 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.530 5.530 20 Si 0.730 3.270 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.015 4.015 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.160 0.840 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.231 0.769 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.216 15.778 0.223 16.333 hybrid contribution -0.399 -0.356 0.366 0.648 sum -4.614 15.421 0.589 16.108 Atomic orbital electron populations 1.22118 0.76803 1.05001 1.03959 1.44617 1.09600 1.04848 1.67790 1.19835 0.89504 0.83405 0.75959 1.90794 1.72378 1.26001 1.47932 1.24741 0.95901 1.03956 1.10265 1.88205 0.98707 0.95533 1.89726 1.22371 0.95390 0.88077 0.99066 1.20818 1.00941 0.89292 1.15907 1.15807 0.87609 0.82526 0.78813 1.90768 1.14447 1.85065 1.52752 1.48586 1.08177 1.06134 1.70734 1.22342 0.81725 0.97740 1.00390 1.22751 0.99947 0.92996 0.99879 1.19512 0.88351 0.89560 0.81890 1.86115 1.40295 1.82072 1.30807 1.21482 1.09776 1.16799 1.09678 0.91576 1.25065 0.95404 0.97473 0.95256 1.69744 1.15064 1.39674 1.28547 0.86435 0.77519 0.82556 0.80490 1.20321 1.21087 1.19792 1.22999 0.95886 0.80436 1.02135 0.90643 0.89170 0.89242 0.83998 0.84024 0.83942 0.92026 0.91675 0.90463 0.90528 0.76929 0.92014 0.91575 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.54 10.07 59.85 0.60 1.14 16 2 N -0.55 -6.10 2.95 -122.27 -0.36 -6.47 16 3 C 0.53 6.01 7.79 -11.91 -0.09 5.92 16 4 O -0.50 -6.75 16.93 5.58 0.09 -6.65 16 5 C -0.20 -1.83 7.36 36.21 0.27 -1.56 16 6 S 0.04 0.49 20.64 -107.50 -2.22 -1.73 16 7 C 0.16 2.17 7.00 -16.01 -0.11 2.05 16 8 C -0.23 -3.30 8.66 -39.42 -0.34 -3.65 16 9 C 0.56 10.61 7.57 -15.45 -0.12 10.49 16 10 O -0.55 -11.96 14.43 5.00 0.07 -11.88 16 11 N -0.60 -11.91 3.33 -174.30 -0.58 -12.49 16 12 C 0.10 1.66 6.47 -2.53 -0.02 1.64 16 13 C -0.12 -2.23 6.23 -24.59 -0.15 -2.38 16 14 C 0.25 5.79 0.85 -89.93 -0.08 5.71 16 15 O -0.58 -14.21 13.07 -35.23 -0.46 -14.67 16 16 C -0.54 -13.81 8.11 -34.44 -0.28 -14.09 16 17 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 18 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 19 N -0.89 -23.43 11.03 55.43 0.61 -22.82 16 20 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 24 C 0.11 2.52 5.23 -3.06 -0.02 2.50 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.72 7.49 -51.93 -0.39 0.33 16 27 H 0.09 0.61 6.61 -51.93 -0.34 0.27 16 28 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.14 1.60 5.36 -52.49 -0.28 1.32 16 31 H 0.06 0.79 7.10 -51.93 -0.37 0.42 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 34 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 35 H 0.38 9.50 7.51 45.56 0.34 9.84 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.07 1.71 7.92 -51.93 -0.41 1.30 16 38 H 0.07 1.78 7.81 -51.93 -0.41 1.37 16 LS Contribution 328.48 15.07 4.95 4.95 Total: -1.00 -30.74 328.48 -7.27 -38.01 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -3.93 Total: 9.04 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: -0.43 Total: 9.52 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: -0.33 Total: -41.78 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.29 Total: -33.21 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.22 Total: -1.73 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.74 -7.27 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824024999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.229 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds