Wall clock time and date at job start Fri Apr 10 2020 18:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.32209 * 119.81486 * 2 1 4 4 O 1.21256 * 122.90011 * 359.97438 * 3 2 1 5 5 C 1.51121 * 114.20137 * 180.02562 * 3 2 1 6 6 S 1.82377 * 103.49607 * 359.76049 * 5 3 2 7 7 C 1.36747 * 119.81803 * 179.97438 * 2 1 3 8 8 C 1.36440 * 126.26540 * 359.97438 * 7 2 1 9 9 C 1.40394 * 120.00066 * 180.02562 * 8 7 2 10 10 O 1.21912 * 119.99938 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00243 * 179.72414 * 9 8 7 12 12 C 1.47425 * 125.64785 * 0.29625 * 11 9 8 13 13 C 1.54909 * 104.82972 * 204.09187 * 12 11 9 14 14 C 1.55152 * 101.58563 * 322.98945 * 13 12 11 15 15 O 1.42902 * 110.71936 * 276.96193 * 14 13 12 16 16 C 1.50698 * 110.72021 * 153.86469 * 14 13 12 17 17 H 1.07996 * 120.00431 * 2.79674 * 16 14 13 18 18 C 1.37885 * 119.99585 * 182.79585 * 16 14 13 19 19 N 1.31513 * 120.00172 * 5.89918 * 18 16 14 20 20 Si 1.86800 * 119.99720 * 185.89868 * 18 16 14 21 21 H 1.48502 * 109.46884 * 84.90422 * 20 18 16 22 22 H 1.48495 * 109.47106 * 204.90276 * 20 18 16 23 23 H 1.48498 * 109.47364 * 324.90642 * 20 18 16 24 24 C 1.47023 * 125.64897 * 179.97438 * 11 9 8 25 25 H 1.09001 * 109.46899 * 270.02277 * 1 2 3 26 26 H 1.08994 * 109.47328 * 30.01978 * 1 2 3 27 27 H 1.09004 * 109.47522 * 150.02331 * 1 2 3 28 28 H 1.09004 * 110.61493 * 118.50298 * 5 3 2 29 29 H 1.08998 * 110.61903 * 241.33864 * 5 3 2 30 30 H 1.07998 * 120.00315 * 359.97438 * 8 7 2 31 31 H 1.09005 * 110.36382 * 322.93090 * 12 11 9 32 32 H 1.08994 * 110.36644 * 85.25194 * 12 11 9 33 33 H 1.09000 * 111.00223 * 81.06292 * 13 12 11 34 34 H 1.09001 * 111.00189 * 204.91434 * 13 12 11 35 35 H 0.96703 * 113.99432 * 174.40362 * 15 14 13 36 36 H 0.97004 * 119.99681 * 179.97438 * 19 18 16 37 37 H 1.09005 * 109.88195 * 298.39122 * 24 11 9 38 38 H 1.08998 * 109.88083 * 59.55366 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1223 1.1471 0.0000 4 8 1.5665 2.2247 -0.0005 5 6 3.6263 0.9993 -0.0006 6 16 3.8764 -0.8073 0.0063 7 6 2.1449 -1.1864 0.0005 8 6 1.5918 -2.4337 0.0016 9 6 2.4187 -3.5683 0.0026 10 8 3.6309 -3.4391 0.0020 11 7 1.8723 -4.8003 0.0092 12 6 0.4289 -5.1002 0.0097 13 6 0.3182 -6.5157 0.6291 14 6 1.5789 -7.2093 0.0487 15 8 1.3235 -7.7028 -1.2678 16 6 2.0389 -8.3230 0.9536 17 1 1.4735 -8.5663 1.8410 18 6 3.1817 -9.0316 0.6485 19 7 3.9333 -8.6624 -0.3656 20 14 3.6625 -10.5159 1.6756 21 1 2.9511 -11.7181 1.1715 22 1 5.1285 -10.7312 1.5785 23 1 3.2898 -10.2786 3.0934 24 6 2.6171 -6.0680 0.0105 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8897 -0.5141 27 1 -0.3634 -0.8902 -0.5135 28 1 4.0555 1.4465 -0.8973 29 1 4.0565 1.4485 0.8945 30 1 0.5179 -2.5482 0.0025 31 1 -0.1089 -4.3754 0.6211 32 1 0.0412 -5.1004 -1.0089 33 1 0.3631 -6.4706 1.7172 34 1 -0.5911 -7.0171 0.2976 35 1 2.1025 -8.0688 -1.7086 36 1 4.7375 -9.1607 -0.5800 37 1 3.2213 -6.1438 -0.8936 38 1 3.2565 -6.1213 0.8916 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824024999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:36 Heat of formation + Delta-G solvation = -95.828605 kcal Electronic energy + Delta-G solvation = -23780.444243 eV Core-core repulsion = 20135.488464 eV Total energy + Delta-G solvation = -3644.955779 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.20255 -41.05981 -39.08539 -38.04629 -36.02400 -34.20657 -32.97142 -32.09502 -31.51937 -29.55556 -28.10230 -27.13871 -25.19423 -23.71490 -21.48037 -21.12498 -20.39363 -19.20410 -19.00605 -18.06236 -17.84374 -17.69682 -17.19054 -16.62046 -16.46972 -16.03523 -15.87265 -15.30445 -14.97551 -14.78952 -14.68606 -14.62290 -13.93906 -13.78961 -13.53483 -13.42034 -13.37577 -12.97722 -12.82279 -12.66609 -12.47075 -12.29396 -12.26174 -12.24709 -12.02302 -11.60412 -11.11629 -10.69273 -10.61955 -10.22845 -10.05096 -9.57865 -8.77019 -8.23787 -6.39144 -0.38147 0.07074 0.72048 1.16109 1.37675 1.43210 1.44695 1.53385 2.30773 2.35380 2.42354 2.82082 3.02399 3.84423 3.88083 3.98180 4.07664 4.11688 4.18834 4.26402 4.36200 4.40415 4.49421 4.58830 4.69431 4.75237 4.78863 4.91511 5.11139 5.18690 5.33816 5.43620 5.56865 5.62280 5.77856 6.10038 6.30472 6.66658 6.77663 7.25520 7.30041 7.35809 8.81722 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.003294 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.453808 B = 8498.211214 C = 9121.038392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.544 5.544 3 C 0.525 3.475 4 O -0.516 6.516 5 C -0.176 4.176 6 S -0.020 6.020 7 C 0.189 3.811 8 C -0.246 4.246 9 C 0.555 3.445 10 O -0.589 6.589 11 N -0.613 5.613 12 C 0.106 3.894 13 C -0.113 4.113 14 C 0.231 3.769 15 O -0.586 6.586 16 C -0.559 4.559 17 H 0.066 0.934 18 C 0.026 3.974 19 N -0.914 5.914 20 Si 0.961 3.039 21 H -0.272 1.272 22 H -0.287 1.287 23 H -0.268 1.268 24 C 0.128 3.872 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.167 0.833 29 H 0.167 0.833 30 H 0.179 0.821 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.373 0.627 36 H 0.269 0.731 37 H 0.029 0.971 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.162 17.116 0.801 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.265 5.265 3 C 0.314 3.686 4 O -0.392 6.392 5 C -0.326 4.326 6 S 0.222 5.778 7 C -0.026 4.026 8 C -0.284 4.284 9 C 0.349 3.651 10 O -0.475 6.475 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.151 4.151 14 C 0.191 3.809 15 O -0.393 6.393 16 C -0.597 4.597 17 H 0.084 0.916 18 C -0.175 4.175 19 N -0.553 5.553 20 Si 0.786 3.214 21 H -0.198 1.198 22 H -0.213 1.213 23 H -0.193 1.193 24 C 0.005 3.995 25 H 0.108 0.892 26 H 0.111 0.889 27 H 0.126 0.874 28 H 0.185 0.815 29 H 0.185 0.815 30 H 0.196 0.804 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.222 0.778 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.143 17.495 0.854 18.562 hybrid contribution 0.243 -0.723 0.165 0.780 sum -5.900 16.772 1.019 17.809 Atomic orbital electron populations 1.22415 0.74869 1.06136 1.05296 1.44758 1.10878 1.04007 1.66872 1.20108 0.90196 0.83070 0.75260 1.90802 1.72873 1.26552 1.48925 1.24850 0.94778 1.00209 1.12714 1.88467 1.00249 0.99802 1.89277 1.22308 0.94991 0.88567 0.96739 1.20574 1.01849 0.87581 1.18398 1.16469 0.87653 0.83231 0.77717 1.90762 1.16497 1.85852 1.54415 1.48598 1.09264 1.05151 1.71481 1.22508 0.80020 0.97281 1.01752 1.22749 0.98062 0.94145 1.00142 1.19734 0.90787 0.89140 0.81260 1.86103 1.39840 1.82086 1.31316 1.21849 1.09983 1.17702 1.10145 0.91579 1.25795 0.95506 0.99846 0.96317 1.69861 1.15242 1.40469 1.29742 0.85523 0.76940 0.79634 0.79259 1.19778 1.21251 1.19276 1.22401 0.95576 0.83141 0.98418 0.89220 0.88867 0.87377 0.81527 0.81541 0.80410 0.87199 0.90707 0.89937 0.89157 0.77821 0.92205 0.95263 0.95145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.07 127.77 1.29 2.00 16 2 N -0.54 -10.56 2.95 -660.57 -1.95 -12.51 16 3 C 0.53 10.52 7.79 88.19 0.69 11.21 16 4 O -0.52 -12.59 16.93 -2.95 -0.05 -12.64 16 5 C -0.18 -2.76 7.36 71.37 0.53 -2.23 16 6 S -0.02 -0.51 20.64 -56.49 -1.17 -1.68 16 7 C 0.19 4.61 7.00 83.51 0.58 5.19 16 8 C -0.25 -6.48 8.66 22.38 0.19 -6.29 16 9 C 0.55 20.88 7.57 84.77 0.64 21.52 16 10 O -0.59 -26.59 14.43 -5.03 -0.07 -26.66 16 11 N -0.61 -24.04 3.33 -823.50 -2.74 -26.78 16 12 C 0.11 3.21 6.47 86.86 0.56 3.77 16 13 C -0.11 -4.11 6.23 31.98 0.20 -3.91 16 14 C 0.23 10.97 0.85 -10.35 -0.01 10.96 16 15 O -0.59 -29.00 13.07 -148.98 -1.95 -30.95 16 16 C -0.56 -29.09 8.11 25.60 0.21 -28.88 16 17 H 0.07 3.35 7.78 -2.91 -0.02 3.32 16 18 C 0.03 1.38 5.28 84.66 0.45 1.83 16 19 N -0.91 -49.85 11.03 21.45 0.24 -49.61 16 20 Si 0.96 41.97 29.54 68.60 2.03 44.00 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 24 C 0.13 6.28 5.23 86.73 0.45 6.74 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 1.19 7.49 -2.39 -0.02 1.18 16 27 H 0.11 1.01 6.61 -2.38 -0.02 0.99 16 28 H 0.17 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.17 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.18 3.22 5.36 -2.91 -0.02 3.21 16 31 H 0.11 2.30 7.10 -2.38 -0.02 2.29 16 32 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.08 2.88 8.03 -2.39 -0.02 2.86 16 34 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.37 19.38 7.51 -74.06 -0.56 18.83 16 36 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 37 H 0.03 1.60 7.92 -2.38 -0.02 1.59 16 38 H 0.03 1.67 7.81 -2.39 -0.02 1.65 16 Total: -1.00 -70.00 328.48 0.67 -69.32 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.55 Total: 25.61 kcal Atomic # 6 Polarization: 16.12 SS G_CDS: 5.78 Total: 21.90 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -4.45 Total: -88.90 kcal Atomic # 8 Polarization: -68.18 SS G_CDS: -2.07 Total: -70.25 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -1.17 Total: -1.68 kcal Total: -70.00 0.67 -69.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824024999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.506 kcal (2) G-P(sol) polarization free energy of solvation -69.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds