Wall clock time and date at job start Fri Apr 10 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34749 * 116.99821 * 2 1 4 4 O 1.21514 * 120.00161 * 0.02562 * 3 2 1 5 5 C 1.47386 * 119.99880 * 180.02562 * 3 2 1 6 6 C 1.36666 * 125.78409 * 180.02562 * 5 3 2 7 7 N 1.34778 * 106.83676 * 179.73846 * 6 5 3 8 8 C 1.46499 * 126.58539 * 180.26553 * 7 6 5 9 9 C 1.50702 * 109.47642 * 124.99655 * 8 7 6 10 10 O 1.21296 * 119.99390 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00571 * 179.97438 * 9 8 7 12 12 C 1.37095 * 120.00547 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99684 * 322.20476 * 12 11 9 14 14 C 1.38949 * 120.00447 * 142.20280 * 12 11 9 15 15 N 1.31408 * 120.00045 * 158.60341 * 14 12 11 16 16 Si 1.86802 * 119.99894 * 338.60293 * 14 12 11 17 17 H 1.48496 * 109.46985 * 95.99432 * 16 14 12 18 18 H 1.48496 * 109.46975 * 215.99453 * 16 14 12 19 19 H 1.48499 * 109.46893 * 335.98987 * 16 14 12 20 20 C 1.46503 * 119.99789 * 359.97438 * 11 9 8 21 21 C 1.50699 * 109.46800 * 83.23927 * 20 11 9 22 22 O 1.20828 * 120.00495 * 359.97438 * 21 20 11 23 23 O 1.34233 * 120.00122 * 180.02562 * 21 20 11 24 24 N 1.40211 * 106.83076 * 0.25795 * 7 6 5 25 25 N 1.28759 * 108.38200 * 0.02562 * 24 7 6 26 26 H 1.08996 * 109.47270 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46996 * 300.00042 * 1 2 3 28 28 H 1.09008 * 109.47129 * 60.00147 * 1 2 3 29 29 H 1.08003 * 126.58173 * 0.02562 * 6 5 3 30 30 H 1.09000 * 109.47205 * 244.99660 * 8 7 6 31 31 H 1.08998 * 109.47470 * 4.99728 * 8 7 6 32 32 H 0.97003 * 120.00276 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.47359 * 203.23740 * 20 11 9 34 34 H 1.08997 * 109.47352 * 323.24093 * 20 11 9 35 35 H 0.96700 * 117.00190 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2756 2.4268 -0.0001 7 7 5.5715 2.0565 0.0050 8 6 6.7342 2.9477 0.0128 9 6 7.6233 2.6035 1.1799 10 8 7.3155 1.7027 1.9316 11 7 8.7601 3.2966 1.3885 12 6 9.5692 2.9831 2.4500 13 1 9.1327 2.6951 3.3950 14 6 10.9506 3.0360 2.3102 15 7 11.7145 3.1555 3.3727 16 14 11.7218 2.9372 0.6117 17 1 11.9950 4.3085 0.1116 18 1 12.9945 2.1760 0.6895 19 1 10.7891 2.2484 -0.3161 20 6 9.1320 4.3842 0.4803 21 6 8.4145 5.6455 0.8868 22 8 7.6686 5.6368 1.8373 23 8 8.6032 6.7786 0.1923 24 7 5.5932 0.6545 0.0016 25 7 4.3777 0.2297 -0.0057 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 3.8950 3.4375 0.0011 30 1 7.2912 2.8264 -0.9163 31 1 6.3995 3.9810 0.1034 32 1 12.6788 3.1928 3.2751 33 1 10.2088 4.5468 0.5296 34 1 8.8510 4.1187 -0.5388 35 1 8.1215 7.5621 0.4911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831462179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:49 Heat of formation + Delta-G solvation = -75.736365 kcal Electronic energy + Delta-G solvation = -25738.215412 eV Core-core repulsion = 21547.837684 eV Total energy + Delta-G solvation = -4190.377728 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.099 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.20199 -40.32418 -40.13003 -38.80305 -36.52824 -36.03333 -35.22912 -34.35061 -32.39818 -31.17801 -29.09674 -28.34443 -27.71369 -25.06624 -23.87094 -22.41696 -21.98892 -21.02224 -19.61569 -18.06840 -17.98252 -17.59102 -17.17346 -17.08527 -16.63674 -16.37125 -16.09521 -15.76641 -15.23464 -15.08582 -14.66325 -14.57618 -13.88205 -13.72862 -13.34191 -13.09150 -12.96859 -12.78759 -12.47415 -12.24062 -12.19464 -11.88992 -11.39276 -11.23238 -11.11963 -10.92468 -10.86611 -10.78332 -10.57522 -10.38238 -10.17796 -9.42920 -9.32956 -8.95054 -8.21200 -6.63787 -4.26560 1.03597 1.61611 1.91656 2.36560 2.61672 2.76159 2.84934 3.01008 3.02617 3.07004 3.38183 3.79802 3.91589 4.19136 4.36097 4.61239 4.73499 4.81818 4.86368 4.92025 4.95242 5.03191 5.07766 5.31668 5.37391 5.43182 5.54012 5.71711 6.17098 6.24182 6.61518 7.15636 7.54932 7.88127 8.05624 8.07619 8.14508 8.61264 8.96305 9.26391 10.47201 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.003615 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.195889 B = 7743.382035 C = 8452.525120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.339 6.339 3 C 0.564 3.436 4 O -0.511 6.511 5 C -0.101 4.101 6 C 0.104 3.896 7 N -0.335 5.335 8 C 0.095 3.905 9 C 0.465 3.535 10 O -0.516 6.516 11 N -0.441 5.441 12 C -0.318 4.318 13 H 0.112 0.888 14 C 0.062 3.938 15 N -0.848 5.848 16 Si 0.861 3.139 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.256 1.256 20 C 0.090 3.910 21 C 0.454 3.546 22 O -0.492 6.492 23 O -0.523 6.523 24 N -0.015 5.015 25 N -0.193 5.193 26 H 0.103 0.897 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.206 0.794 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.279 0.721 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 4.252 -12.257 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.254 6.254 3 C 0.407 3.593 4 O -0.398 6.398 5 C -0.237 4.237 6 C -0.054 4.054 7 N -0.117 5.117 8 C -0.030 4.030 9 C 0.251 3.749 10 O -0.393 6.393 11 N -0.164 5.164 12 C -0.444 4.444 13 H 0.129 0.871 14 C -0.145 4.145 15 N -0.482 5.482 16 Si 0.687 3.313 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.180 1.180 20 C -0.036 4.036 21 C 0.293 3.707 22 O -0.378 6.378 23 O -0.335 6.335 24 N 0.003 4.997 25 N -0.068 5.068 26 H 0.121 0.879 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.223 0.777 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.090 0.910 33 H 0.139 0.861 34 H 0.124 0.876 35 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -11.130 2.489 -11.593 16.263 hybrid contribution -0.283 1.823 -0.491 1.909 sum -11.414 4.313 -12.085 17.173 Atomic orbital electron populations 1.23320 0.75954 1.03891 1.02579 1.86661 1.23284 1.31701 1.83796 1.19415 0.86160 0.81684 0.72057 1.90860 1.65796 1.35981 1.47207 1.20065 0.92324 0.89936 1.21368 1.23248 0.83518 1.01224 0.97389 1.49975 1.05592 1.08150 1.48015 1.22118 0.85676 0.92740 1.02507 1.19782 0.83920 0.84190 0.86991 1.90716 1.71503 1.30341 1.46724 1.43261 1.21188 1.24953 1.27023 1.19047 0.86941 1.47820 0.90636 0.87061 1.25399 0.95991 0.95498 0.97658 1.69726 1.05841 1.43110 1.29566 0.87177 0.80559 0.78579 0.85002 1.19587 1.20212 1.18025 1.21760 1.02096 0.84111 0.95670 1.24576 0.80078 0.85339 0.80677 1.90751 1.35285 1.85235 1.26508 1.84572 1.68972 1.21075 1.58847 1.82290 1.12579 0.85709 1.19117 1.74818 0.96842 1.25606 1.09580 0.87860 0.91724 0.91802 0.77709 0.85899 0.86187 0.91045 0.86119 0.87618 0.73720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.34 -4.51 10.57 -40.62 -0.43 -4.94 16 3 C 0.56 8.20 7.96 34.45 0.27 8.48 16 4 O -0.51 -7.69 16.65 -19.28 -0.32 -8.01 16 5 C -0.10 -1.58 7.02 -83.57 -0.59 -2.17 16 6 C 0.10 1.43 11.27 -16.83 -0.19 1.24 16 7 N -0.34 -5.40 3.41 -62.23 -0.21 -5.61 16 8 C 0.09 1.39 5.64 -5.19 -0.03 1.36 16 9 C 0.47 9.85 7.41 -10.99 -0.08 9.77 16 10 O -0.52 -13.38 15.60 5.54 0.09 -13.29 16 11 N -0.44 -9.59 1.74 -116.09 -0.20 -9.80 16 12 C -0.32 -8.41 9.36 -14.93 -0.14 -8.55 16 13 H 0.11 3.42 7.92 -52.48 -0.42 3.00 16 14 C 0.06 1.59 5.28 -17.47 -0.09 1.50 16 15 N -0.85 -23.06 13.96 55.50 0.77 -22.28 16 16 Si 0.86 17.81 24.97 -169.99 -4.24 13.57 16 17 H -0.27 -5.00 6.71 56.52 0.38 -4.62 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 20 C 0.09 1.50 4.33 -5.19 -0.02 1.48 16 21 C 0.45 7.14 7.63 36.01 0.27 7.41 16 22 O -0.49 -9.52 17.00 -18.75 -0.32 -9.84 16 23 O -0.52 -5.97 13.42 -39.27 -0.53 -6.50 16 24 N -0.02 -0.29 12.88 60.35 0.78 0.49 16 25 N -0.19 -3.50 12.39 32.84 0.41 -3.10 16 26 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.21 1.96 8.06 -52.48 -0.42 1.53 16 30 H 0.12 1.36 7.42 -51.93 -0.39 0.97 16 31 H 0.12 1.38 7.37 -51.93 -0.38 0.99 16 32 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.12 2.15 3.61 -51.93 -0.19 1.96 16 34 H 0.11 1.25 6.73 -51.93 -0.35 0.90 16 35 H 0.40 2.84 9.10 45.56 0.41 3.25 16 LS Contribution 322.91 15.07 4.87 4.87 Total: -1.00 -36.65 322.91 -1.02 -37.67 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.15 Total: 4.88 kcal Atomic # 6 Polarization: 21.43 SS G_CDS: 0.48 Total: 21.91 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.54 Total: -40.30 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -1.51 Total: -42.59 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -4.24 Total: 13.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.65 -1.02 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831462179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.065 kcal (2) G-P(sol) polarization free energy of solvation -36.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds