Wall clock time and date at job start Fri Apr 10 2020 18:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34749 * 116.99821 * 2 1 4 4 O 1.21514 * 120.00161 * 0.02562 * 3 2 1 5 5 C 1.47386 * 119.99880 * 180.02562 * 3 2 1 6 6 C 1.36666 * 125.78409 * 180.02562 * 5 3 2 7 7 N 1.34778 * 106.83676 * 179.73846 * 6 5 3 8 8 C 1.46499 * 126.58539 * 180.26553 * 7 6 5 9 9 C 1.50702 * 109.47642 * 124.99655 * 8 7 6 10 10 O 1.21296 * 119.99390 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00571 * 179.97438 * 9 8 7 12 12 C 1.37095 * 120.00547 * 180.02562 * 11 9 8 13 13 H 1.08003 * 119.99684 * 322.20476 * 12 11 9 14 14 C 1.38949 * 120.00447 * 142.20280 * 12 11 9 15 15 N 1.31408 * 120.00045 * 158.60341 * 14 12 11 16 16 Si 1.86802 * 119.99894 * 338.60293 * 14 12 11 17 17 H 1.48496 * 109.46985 * 95.99432 * 16 14 12 18 18 H 1.48496 * 109.46975 * 215.99453 * 16 14 12 19 19 H 1.48499 * 109.46893 * 335.98987 * 16 14 12 20 20 C 1.46503 * 119.99789 * 359.97438 * 11 9 8 21 21 C 1.50699 * 109.46800 * 83.23927 * 20 11 9 22 22 O 1.20828 * 120.00495 * 359.97438 * 21 20 11 23 23 O 1.34233 * 120.00122 * 180.02562 * 21 20 11 24 24 N 1.40211 * 106.83076 * 0.25795 * 7 6 5 25 25 N 1.28759 * 108.38200 * 0.02562 * 24 7 6 26 26 H 1.08996 * 109.47270 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46996 * 300.00042 * 1 2 3 28 28 H 1.09008 * 109.47129 * 60.00147 * 1 2 3 29 29 H 1.08003 * 126.58173 * 0.02562 * 6 5 3 30 30 H 1.09000 * 109.47205 * 244.99660 * 8 7 6 31 31 H 1.08998 * 109.47470 * 4.99728 * 8 7 6 32 32 H 0.97003 * 120.00276 * 180.02562 * 15 14 12 33 33 H 1.09003 * 109.47359 * 203.23740 * 20 11 9 34 34 H 1.08997 * 109.47352 * 323.24093 * 20 11 9 35 35 H 0.96700 * 117.00190 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5356 1.2778 -0.0006 6 6 4.2756 2.4268 -0.0001 7 7 5.5715 2.0565 0.0050 8 6 6.7342 2.9477 0.0128 9 6 7.6233 2.6035 1.1799 10 8 7.3155 1.7027 1.9316 11 7 8.7601 3.2966 1.3885 12 6 9.5692 2.9831 2.4500 13 1 9.1327 2.6951 3.3950 14 6 10.9506 3.0360 2.3102 15 7 11.7145 3.1555 3.3727 16 14 11.7218 2.9372 0.6117 17 1 11.9950 4.3085 0.1116 18 1 12.9945 2.1760 0.6895 19 1 10.7891 2.2484 -0.3161 20 6 9.1320 4.3842 0.4803 21 6 8.4145 5.6455 0.8868 22 8 7.6686 5.6368 1.8373 23 8 8.6032 6.7786 0.1923 24 7 5.5932 0.6545 0.0016 25 7 4.3777 0.2297 -0.0057 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 3.8950 3.4375 0.0011 30 1 7.2912 2.8264 -0.9163 31 1 6.3995 3.9810 0.1034 32 1 12.6788 3.1928 3.2751 33 1 10.2088 4.5468 0.5296 34 1 8.8510 4.1187 -0.5388 35 1 8.1215 7.5621 0.4911 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000831462179.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:49 Heat of formation + Delta-G solvation = -107.056067 kcal Electronic energy + Delta-G solvation = -25739.573537 eV Core-core repulsion = 21547.837684 eV Total energy + Delta-G solvation = -4191.735853 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.40264 -41.63169 -41.19479 -40.27938 -37.55997 -37.30935 -36.72438 -35.67769 -34.26770 -32.34780 -30.40000 -29.73682 -28.59403 -26.77519 -24.97596 -23.72284 -23.21421 -22.18793 -21.06922 -19.28113 -19.25138 -19.16095 -18.56344 -18.14903 -17.86338 -17.51954 -17.28651 -17.06039 -16.65195 -16.40174 -15.96757 -15.85747 -15.31354 -14.89129 -14.60058 -14.39403 -14.28930 -14.16230 -13.79675 -13.66264 -13.29142 -12.91138 -12.85642 -12.56405 -12.43586 -12.33351 -11.97154 -11.88270 -11.83959 -11.81841 -11.71089 -11.13942 -10.66914 -10.47288 -10.00567 -8.56120 -6.26586 -0.06200 0.37480 0.81561 1.13665 1.19472 1.33834 1.48432 1.54870 1.63326 1.87392 1.98836 2.16390 2.41898 2.88321 3.08934 3.28309 3.50994 3.70775 3.76925 3.78987 3.95870 4.13490 4.27963 4.30609 4.37721 4.43313 4.52851 4.74533 5.13294 5.17758 5.38821 5.63751 5.94938 6.31385 6.48383 6.77168 6.86489 6.98995 7.09998 7.55352 8.60881 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.003615 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.195889 B = 7743.382035 C = 8452.525120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.567 3.433 4 O -0.518 6.518 5 C -0.118 4.118 6 C 0.125 3.875 7 N -0.339 5.339 8 C 0.104 3.896 9 C 0.457 3.543 10 O -0.582 6.582 11 N -0.452 5.452 12 C -0.337 4.337 13 H 0.037 0.963 14 C 0.009 3.991 15 N -0.907 5.907 16 Si 0.936 3.064 17 H -0.222 1.222 18 H -0.288 1.288 19 H -0.233 1.233 20 C 0.079 3.921 21 C 0.469 3.531 22 O -0.538 6.538 23 O -0.500 6.500 24 N -0.063 5.063 25 N -0.213 5.213 26 H 0.131 0.869 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.251 0.749 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.284 0.716 33 H 0.116 0.884 34 H 0.170 0.830 35 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.526 6.532 -16.425 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.410 3.590 4 O -0.407 6.407 5 C -0.255 4.255 6 C -0.032 4.032 7 N -0.122 5.122 8 C -0.020 4.020 9 C 0.245 3.755 10 O -0.462 6.462 11 N -0.174 5.174 12 C -0.465 4.465 13 H 0.055 0.945 14 C -0.194 4.194 15 N -0.543 5.543 16 Si 0.756 3.244 17 H -0.146 1.146 18 H -0.215 1.215 19 H -0.156 1.156 20 C -0.045 4.045 21 C 0.310 3.690 22 O -0.427 6.427 23 O -0.314 6.314 24 N -0.044 5.044 25 N -0.088 5.088 26 H 0.149 0.851 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.267 0.733 30 H 0.189 0.811 31 H 0.179 0.821 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.187 0.813 35 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -11.809 4.825 -15.802 20.309 hybrid contribution -0.216 1.178 0.899 1.498 sum -12.025 6.003 -14.903 20.068 Atomic orbital electron populations 1.23685 0.73506 1.06046 1.03204 1.86644 1.25759 1.31177 1.83369 1.19284 0.85810 0.81984 0.71886 1.90845 1.65839 1.36183 1.47842 1.20500 0.93021 0.90214 1.21783 1.23973 0.82257 1.02503 0.94486 1.50070 1.06743 1.07453 1.47932 1.22304 0.84770 0.94129 1.00811 1.20879 0.83942 0.82897 0.87767 1.90686 1.73089 1.33044 1.49430 1.43222 1.20867 1.26859 1.26484 1.18497 0.88225 1.49692 0.90102 0.94529 1.26339 0.95796 0.94154 1.03065 1.69872 1.06396 1.45027 1.32991 0.86031 0.78801 0.81038 0.78565 1.14611 1.21456 1.15594 1.21997 1.02032 0.83290 0.97225 1.24107 0.78968 0.86105 0.79796 1.90769 1.37514 1.85998 1.28460 1.84483 1.68665 1.20781 1.57448 1.82239 1.13080 0.87672 1.21379 1.74768 0.97183 1.26948 1.09867 0.85071 0.91448 0.90816 0.73255 0.81087 0.82070 0.90661 0.86660 0.81294 0.70909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.57 113.37 1.20 1.64 16 2 O -0.35 -9.11 10.57 -56.59 -0.60 -9.70 16 3 C 0.57 15.82 7.96 70.23 0.56 16.37 16 4 O -0.52 -14.63 16.65 19.79 0.33 -14.30 16 5 C -0.12 -3.57 7.02 40.78 0.29 -3.28 16 6 C 0.13 3.10 11.27 83.87 0.95 4.04 16 7 N -0.34 -10.18 3.41 -350.80 -1.20 -11.37 16 8 C 0.10 2.64 5.64 85.63 0.48 3.12 16 9 C 0.46 19.13 7.41 87.66 0.65 19.78 16 10 O -0.58 -31.59 15.60 -3.08 -0.05 -31.64 16 11 N -0.45 -19.37 1.74 -639.60 -1.11 -20.49 16 12 C -0.34 -18.83 9.36 84.04 0.79 -18.04 16 13 H 0.04 2.51 7.92 -2.91 -0.02 2.49 16 14 C 0.01 0.49 5.28 84.93 0.45 0.94 16 15 N -0.91 -51.83 13.96 21.66 0.30 -51.53 16 16 Si 0.94 35.38 24.97 68.60 1.71 37.09 16 17 H -0.22 -6.76 6.71 99.48 0.67 -6.09 16 18 H -0.29 -11.39 7.11 99.48 0.71 -10.68 16 19 H -0.23 -7.90 7.11 99.48 0.71 -7.19 16 20 C 0.08 2.31 4.33 85.63 0.37 2.68 16 21 C 0.47 12.97 7.63 71.24 0.54 13.51 16 22 O -0.54 -19.90 17.00 21.96 0.37 -19.53 16 23 O -0.50 -8.73 13.42 -51.45 -0.69 -9.42 16 24 N -0.06 -2.39 12.88 37.02 0.48 -1.91 16 25 N -0.21 -7.75 12.39 -50.03 -0.62 -8.37 16 26 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.25 3.59 8.06 -2.91 -0.02 3.57 16 30 H 0.17 2.70 7.42 -2.39 -0.02 2.69 16 31 H 0.16 2.81 7.37 -2.39 -0.02 2.79 16 32 H 0.28 14.70 8.31 -92.71 -0.77 13.93 16 33 H 0.12 3.57 3.61 -2.39 -0.01 3.56 16 34 H 0.17 2.75 6.73 -2.39 -0.02 2.73 16 35 H 0.43 3.81 9.10 -74.06 -0.67 3.13 16 Total: -1.00 -91.87 322.91 5.67 -86.20 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.47 Total: 14.21 kcal Atomic # 6 Polarization: 34.50 SS G_CDS: 6.27 Total: 40.77 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -2.15 Total: -93.68 kcal Atomic # 8 Polarization: -83.96 SS G_CDS: -0.63 Total: -84.59 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 1.71 Total: 37.09 kcal Total: -91.87 5.67 -86.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831462179.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.860 kcal (2) G-P(sol) polarization free energy of solvation -91.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds