Wall clock time and date at job start Fri Apr 10 2020 18:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47306 * 2 1 4 4 C 1.46490 * 120.00157 * 270.00442 * 3 2 1 5 5 C 1.50706 * 109.47015 * 269.99486 * 4 3 2 6 6 H 1.07997 * 119.99764 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46838 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47086 * 120.00232 * 9 7 5 12 12 H 1.48499 * 109.47425 * 240.00773 * 9 7 5 13 13 C 1.34775 * 119.99539 * 89.99876 * 3 2 1 14 14 O 1.21283 * 119.99720 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00219 * 0.02562 * 13 3 2 16 16 O 1.45209 * 109.46769 * 179.97438 * 15 13 3 17 17 C 1.34233 * 116.99482 * 180.02562 * 16 15 13 18 18 O 1.20828 * 120.00205 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99707 * 180.02562 * 17 16 15 20 20 C 1.50706 * 109.47238 * 180.02562 * 19 17 16 21 21 C 1.33635 * 122.75319 * 124.73143 * 20 19 17 22 22 S 1.76192 * 107.92524 * 179.97438 * 21 20 19 23 23 C 1.70976 * 90.28427 * 0.27803 * 22 21 20 24 24 N 1.29027 * 110.16712 * 359.83656 * 23 22 21 25 25 H 1.09009 * 109.47316 * 59.99593 * 1 2 3 26 26 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47413 * 300.00323 * 1 2 3 28 28 H 1.08998 * 109.47419 * 240.00438 * 2 1 3 29 29 H 1.08994 * 109.47009 * 120.00025 * 2 1 3 30 30 H 1.08999 * 109.47343 * 29.98979 * 4 3 2 31 31 H 1.08995 * 109.47678 * 149.99683 * 4 3 2 32 32 H 0.97003 * 119.99801 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46792 * 60.00210 * 15 13 3 34 34 H 1.09002 * 109.47303 * 300.00113 * 15 13 3 35 35 H 1.08997 * 109.47434 * 59.99737 * 19 17 16 36 36 H 1.08998 * 109.47220 * 299.99764 * 19 17 16 37 37 H 1.08001 * 126.03202 * 0.03585 * 21 20 19 38 38 H 1.08001 * 124.91761 * 179.84059 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8352 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1258 -3.6179 9 14 5.9131 2.0957 -3.4175 10 1 6.6005 1.2397 -2.4174 11 1 5.9201 1.4166 -4.7381 12 1 6.6210 3.3966 -3.5260 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1954 3.5760 17 6 2.1372 1.7113 4.8164 18 8 1.7388 0.5816 4.9746 19 6 2.4432 2.5767 6.0115 20 6 2.1714 1.8022 7.2754 21 6 3.0909 1.6301 8.2297 22 16 2.3623 0.6754 9.5189 23 6 0.8962 0.5956 8.6428 24 7 1.0094 1.2337 7.5271 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8932 -0.5138 0.8899 30 1 1.5817 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 3.6750 3.5157 -4.4442 33 1 2.6228 0.4187 2.5298 34 1 0.9444 1.0113 2.5302 35 1 1.8131 3.4658 5.9871 36 1 3.4916 2.8736 5.9862 37 1 4.1017 2.0101 8.2139 38 1 0.0044 0.0850 8.9752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853943597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:53 Heat of formation + Delta-G solvation = -68.047409 kcal Electronic energy + Delta-G solvation = -22924.587528 eV Core-core repulsion = 19280.836432 eV Total energy + Delta-G solvation = -3643.751096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -40.81640 -39.82094 -38.83615 -36.29448 -35.28514 -32.86146 -32.65561 -30.18121 -29.56112 -28.42403 -26.47355 -25.24757 -23.08801 -22.73431 -21.45456 -19.82213 -18.77406 -18.33802 -17.74606 -16.76484 -16.59988 -16.37563 -16.01021 -15.80493 -15.20291 -14.79662 -14.43777 -14.15160 -13.80345 -13.60297 -13.44461 -13.39412 -12.97919 -12.55378 -12.41416 -12.07732 -12.04057 -11.78301 -11.60963 -11.23782 -10.92860 -10.85437 -10.61825 -10.53625 -10.49343 -10.15041 -9.93641 -9.77202 -9.64503 -9.22247 -8.98112 -8.45469 -7.74712 -6.06200 -4.10957 0.38047 1.05369 1.36906 2.21551 2.24555 2.76573 3.26390 3.29268 3.37080 3.41503 3.80485 3.90708 4.43247 4.51758 4.74454 4.86787 4.90422 4.92861 5.13303 5.18684 5.23506 5.28592 5.31003 5.38612 5.60002 5.72342 5.74645 6.01135 6.19885 6.41288 6.46134 7.00327 7.39968 7.41505 7.47831 7.76220 7.90205 8.20252 8.30404 8.84935 8.99840 9.54121 11.02017 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002545 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.899765 B =11001.352215 C =11602.110986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.052 3.948 16 O -0.330 6.330 17 C 0.463 3.537 18 O -0.495 6.495 19 C -0.037 4.037 20 C 0.075 3.925 21 C -0.246 4.246 22 S 0.117 5.883 23 C 0.027 3.973 24 N -0.447 5.447 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.182 0.818 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.301 -6.308 24.371 25.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.395 6.395 15 C -0.026 4.026 16 O -0.245 6.245 17 C 0.305 3.695 18 O -0.382 6.382 19 C -0.077 4.077 20 C -0.057 4.057 21 C -0.385 4.385 22 S 0.369 5.631 23 C -0.273 4.273 24 N -0.160 5.160 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.199 0.801 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.367 -6.318 24.807 25.969 hybrid contribution 0.994 -0.015 -1.199 1.558 sum -3.373 -6.333 23.608 24.674 Atomic orbital electron populations 1.22232 0.96521 1.01692 1.02433 1.21505 0.93770 0.83954 1.02993 1.48209 1.63833 1.13406 1.07147 1.19335 0.96485 0.93730 0.77594 1.21464 0.96852 1.31965 1.06313 0.92356 1.24936 0.97927 0.94882 0.96368 1.69940 1.35626 1.33428 1.14312 0.86429 0.84543 0.78072 0.78295 1.19796 1.20964 1.20841 1.19721 0.79671 0.87145 0.84307 1.90712 1.44550 1.17496 1.86763 1.22942 1.02700 0.92575 0.84356 1.86546 1.78722 1.45012 1.14263 1.23298 0.74834 0.87020 0.84387 1.90685 1.41263 1.19772 1.86498 1.19800 1.05852 0.97311 0.84775 1.19630 0.88722 1.00552 0.96840 1.26841 1.05333 1.08083 0.98243 1.84032 1.08227 1.48099 1.22713 1.28407 1.02577 1.02882 0.93386 1.66044 1.23714 1.09275 1.16930 0.91787 0.91911 0.93100 0.89435 0.91778 0.94624 0.93685 0.92727 0.88804 0.88762 0.85633 0.85681 0.80105 0.78314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.16 0.38 -1.94 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.56 2.46 -175.07 -0.43 -12.99 16 4 C 0.25 6.42 5.16 -5.20 -0.03 6.39 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.51 10.86 7.75 -10.99 -0.09 10.78 16 14 O -0.52 -13.45 16.08 -14.11 -0.23 -13.68 16 15 C 0.05 0.86 4.50 36.01 0.16 1.03 16 16 O -0.33 -5.53 9.76 -45.91 -0.45 -5.98 16 17 C 0.46 6.68 7.92 36.00 0.29 6.96 16 18 O -0.50 -8.22 15.19 -18.75 -0.28 -8.50 16 19 C -0.04 -0.38 6.31 -29.03 -0.18 -0.56 16 20 C 0.07 0.80 5.64 -84.22 -0.47 0.32 16 21 C -0.25 -1.99 11.07 29.12 0.32 -1.67 16 22 S 0.12 0.80 23.22 -107.50 -2.50 -1.69 16 23 C 0.03 0.23 12.23 51.58 0.63 0.86 16 24 N -0.45 -5.32 9.68 -11.89 -0.12 -5.44 16 25 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.67 7.22 -51.93 -0.38 0.30 16 28 H 0.09 1.44 8.07 -51.93 -0.42 1.02 16 29 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16 32 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.09 1.43 7.39 -51.93 -0.38 1.04 16 34 H 0.09 1.41 7.18 -51.93 -0.37 1.03 16 35 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.13 0.91 8.03 -51.93 -0.42 0.49 16 37 H 0.18 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.20 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 348.61 15.07 5.25 5.25 Total: -1.00 -36.69 348.61 -7.23 -43.92 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.77 Total: -2.17 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 0.57 Total: 10.21 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.19 Total: -44.15 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.96 Total: -28.16 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 0.80 SS G_CDS: -2.50 Total: -1.69 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.69 -7.23 -43.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853943597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.130 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds