Wall clock time and date at job start Fri Apr 10 2020 18:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.47306 * 2 1 4 4 C 1.46490 * 120.00157 * 270.00442 * 3 2 1 5 5 C 1.50706 * 109.47015 * 269.99486 * 4 3 2 6 6 H 1.07997 * 119.99764 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00123 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99931 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00083 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46838 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47086 * 120.00232 * 9 7 5 12 12 H 1.48499 * 109.47425 * 240.00773 * 9 7 5 13 13 C 1.34775 * 119.99539 * 89.99876 * 3 2 1 14 14 O 1.21283 * 119.99720 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00219 * 0.02562 * 13 3 2 16 16 O 1.45209 * 109.46769 * 179.97438 * 15 13 3 17 17 C 1.34233 * 116.99482 * 180.02562 * 16 15 13 18 18 O 1.20828 * 120.00205 * 0.02562 * 17 16 15 19 19 C 1.50695 * 119.99707 * 180.02562 * 17 16 15 20 20 C 1.50706 * 109.47238 * 180.02562 * 19 17 16 21 21 C 1.33635 * 122.75319 * 124.73143 * 20 19 17 22 22 S 1.76192 * 107.92524 * 179.97438 * 21 20 19 23 23 C 1.70976 * 90.28427 * 0.27803 * 22 21 20 24 24 N 1.29027 * 110.16712 * 359.83656 * 23 22 21 25 25 H 1.09009 * 109.47316 * 59.99593 * 1 2 3 26 26 H 1.08993 * 109.47377 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47413 * 300.00323 * 1 2 3 28 28 H 1.08998 * 109.47419 * 240.00438 * 2 1 3 29 29 H 1.08994 * 109.47009 * 120.00025 * 2 1 3 30 30 H 1.08999 * 109.47343 * 29.98979 * 4 3 2 31 31 H 1.08995 * 109.47678 * 149.99683 * 4 3 2 32 32 H 0.97003 * 119.99801 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.46792 * 60.00210 * 15 13 3 34 34 H 1.09002 * 109.47303 * 300.00113 * 15 13 3 35 35 H 1.08997 * 109.47434 * 59.99737 * 19 17 16 36 36 H 1.08998 * 109.47220 * 299.99764 * 19 17 16 37 37 H 1.08001 * 126.03202 * 0.03585 * 21 20 19 38 38 H 1.08001 * 124.91761 * 179.84059 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8352 -1.7037 6 1 4.3426 1.2304 -1.0961 7 6 4.1491 2.3898 -2.8779 8 7 3.3491 3.1258 -3.6179 9 14 5.9131 2.0957 -3.4175 10 1 6.6005 1.2397 -2.4174 11 1 5.9201 1.4166 -4.7381 12 1 6.6210 3.3966 -3.5260 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1673 15 6 1.9923 1.3059 2.4723 16 8 2.3073 2.1954 3.5760 17 6 2.1372 1.7113 4.8164 18 8 1.7388 0.5816 4.9746 19 6 2.4432 2.5767 6.0115 20 6 2.1714 1.8022 7.2754 21 6 3.0909 1.6301 8.2297 22 16 2.3623 0.6754 9.5189 23 6 0.8962 0.5956 8.6428 24 7 1.0094 1.2337 7.5271 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8932 -0.5138 0.8899 30 1 1.5817 1.6878 -2.0283 31 1 2.0955 3.1411 -1.1383 32 1 3.6750 3.5157 -4.4442 33 1 2.6228 0.4187 2.5298 34 1 0.9444 1.0113 2.5302 35 1 1.8131 3.4658 5.9871 36 1 3.4916 2.8736 5.9862 37 1 4.1017 2.0101 8.2139 38 1 0.0044 0.0850 8.9752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853943597.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:07:52 Heat of formation + Delta-G solvation = -92.101955 kcal Electronic energy + Delta-G solvation = -22925.630611 eV Core-core repulsion = 19280.836432 eV Total energy + Delta-G solvation = -3644.794179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.88483 -40.86878 -40.25362 -37.56216 -36.96732 -34.94396 -33.43076 -31.76466 -30.81487 -29.49323 -28.21047 -25.94124 -24.90361 -24.19070 -22.58995 -20.53814 -20.25459 -19.26492 -18.80056 -18.63975 -17.91706 -17.88263 -17.41372 -16.75816 -16.65082 -16.19282 -15.97495 -15.24553 -14.85583 -14.78902 -14.54803 -14.41254 -14.14849 -14.02633 -13.64414 -13.62144 -13.31852 -13.24391 -13.05762 -12.69924 -12.52030 -12.40564 -12.23256 -12.05813 -11.79149 -11.69401 -11.67273 -10.74180 -10.65384 -10.57025 -10.38416 -9.80773 -9.55548 -8.23526 -6.38035 -0.21515 0.50388 0.76189 1.13110 1.23719 1.37135 1.39461 1.51118 1.61043 1.87533 2.34731 2.48500 3.06618 3.18672 3.42494 3.69563 3.90339 3.95291 4.01133 4.13400 4.19442 4.36276 4.44432 4.47979 4.56897 4.64125 4.86831 4.92678 5.01443 5.07713 5.18611 5.31088 5.34169 5.53825 5.79117 6.03676 6.55010 6.67936 6.71287 6.80507 7.20394 7.36066 8.84237 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002545 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.899765 B =11001.352215 C =11602.110986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.281 1.281 13 C 0.500 3.500 14 O -0.576 6.576 15 C 0.064 3.936 16 O -0.349 6.349 17 C 0.464 3.536 18 O -0.518 6.518 19 C -0.033 4.033 20 C 0.045 3.955 21 C -0.245 4.245 22 S 0.167 5.833 23 C 0.011 3.989 24 N -0.493 5.493 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.030 0.970 31 H 0.000 1.000 32 H 0.268 0.732 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.154 0.846 37 H 0.207 0.793 38 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -8.010 26.274 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.027 4.027 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.582 4.582 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.191 1.191 11 H -0.194 1.194 12 H -0.207 1.207 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.012 4.012 16 O -0.265 6.265 17 C 0.307 3.693 18 O -0.406 6.406 19 C -0.073 4.073 20 C -0.087 4.087 21 C -0.385 4.385 22 S 0.420 5.580 23 C -0.286 4.286 24 N -0.207 5.207 25 H 0.064 0.936 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.172 0.828 37 H 0.224 0.776 38 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.461 -8.074 26.737 28.143 hybrid contribution 0.666 0.483 -1.688 1.877 sum -2.795 -7.591 25.049 26.323 Atomic orbital electron populations 1.22173 0.94392 1.03753 1.01802 1.21849 0.95507 0.81046 1.04334 1.48211 1.63610 1.15229 1.05740 1.18806 0.95670 0.91688 0.79725 1.21719 0.97749 1.32126 1.06613 0.92753 1.25859 1.02457 0.94420 0.96391 1.70055 1.37725 1.34149 1.14801 0.85345 0.78911 0.78026 0.78381 1.19100 1.19427 1.20719 1.20530 0.78311 0.86651 0.85797 1.90673 1.47114 1.20058 1.87747 1.22751 1.04353 0.92051 0.82093 1.86564 1.79189 1.45583 1.15160 1.24130 0.73762 0.87264 0.84163 1.90662 1.42457 1.20993 1.86534 1.19981 1.07782 0.96763 0.82775 1.19737 0.89285 1.02031 0.97627 1.27232 1.06082 1.07180 0.97967 1.83851 1.06430 1.46577 1.21105 1.28833 1.04317 1.02423 0.93066 1.66040 1.25003 1.10904 1.18753 0.93578 0.88425 0.92603 0.89898 0.88600 0.95252 0.98175 0.92342 0.86772 0.86589 0.84548 0.82817 0.77594 0.76208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 10.24 71.98 0.74 -3.43 16 2 C 0.09 2.93 5.93 86.38 0.51 3.44 16 3 N -0.60 -25.65 2.46 -826.17 -2.03 -27.68 16 4 C 0.26 14.19 5.16 85.64 0.44 14.63 16 5 C -0.54 -31.39 9.39 25.60 0.24 -31.15 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 9 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 13 C 0.50 21.77 7.75 87.66 0.68 22.45 16 14 O -0.58 -31.08 16.08 15.76 0.25 -30.83 16 15 C 0.06 2.09 4.50 71.24 0.32 2.41 16 16 O -0.35 -11.51 9.76 -45.09 -0.44 -11.95 16 17 C 0.46 12.90 7.92 71.23 0.56 13.47 16 18 O -0.52 -16.63 15.19 21.96 0.33 -16.29 16 19 C -0.03 -0.63 6.31 29.10 0.18 -0.45 16 20 C 0.05 0.89 5.64 41.52 0.23 1.12 16 21 C -0.25 -3.38 11.07 66.77 0.74 -2.64 16 22 S 0.17 1.89 23.22 -56.49 -1.31 0.58 16 23 C 0.01 0.18 12.23 130.65 1.60 1.78 16 24 N -0.49 -11.26 9.68 -191.54 -1.85 -13.12 16 25 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.05 1.37 7.22 -2.39 -0.02 1.36 16 28 H 0.08 2.65 8.07 -2.39 -0.02 2.63 16 29 H 0.10 2.37 6.44 -2.39 -0.02 2.35 16 30 H 0.03 1.60 8.07 -2.39 -0.02 1.58 16 31 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 32 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.11 3.24 7.39 -2.39 -0.02 3.22 16 34 H 0.12 3.25 7.18 -2.39 -0.02 3.24 16 35 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.15 1.90 8.03 -2.39 -0.02 1.88 16 37 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.22 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -82.72 348.61 5.06 -77.67 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.08 Total: 7.95 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 6.71 Total: 22.54 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -3.60 Total: -96.61 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: 0.15 Total: -59.07 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -1.31 Total: 0.58 kcal Total: -82.72 5.06 -77.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853943597.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.433 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds