Wall clock time and date at job start Fri Apr 10 2020 18:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46961 * 2 1 4 4 C 1.52996 * 109.47361 * 120.00151 * 2 1 3 5 5 S 1.81404 * 109.47108 * 295.00118 * 4 2 1 6 6 C 1.81392 * 101.92554 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57727 * 294.48956 * 5 4 2 8 8 O 1.42100 * 108.57773 * 65.50804 * 5 4 2 9 9 C 1.50707 * 109.47375 * 240.00017 * 2 1 3 10 10 O 1.21267 * 120.00003 * 240.00283 * 9 2 1 11 11 N 1.34774 * 119.99811 * 59.99618 * 9 2 1 12 12 C 1.39260 * 119.99923 * 185.58392 * 11 9 2 13 13 C 1.39670 * 119.57787 * 18.83541 * 12 11 9 14 14 C 1.38658 * 119.50057 * 180.02562 * 13 12 11 15 15 C 1.38346 * 118.66468 * 359.97438 * 14 13 12 16 16 C 1.40570 * 119.13295 * 0.02562 * 15 14 13 17 17 C 1.41344 * 119.79081 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99765 * 8.92929 * 17 16 15 19 19 C 1.40027 * 120.00299 * 188.93332 * 17 16 15 20 20 N 1.30738 * 119.99887 * 196.06764 * 19 17 16 21 21 Si 1.86804 * 119.99942 * 16.07189 * 19 17 16 22 22 H 1.48500 * 109.46803 * 270.00144 * 21 19 17 23 23 H 1.48493 * 109.47173 * 29.99762 * 21 19 17 24 24 H 1.48498 * 109.46809 * 149.99998 * 21 19 17 25 25 N 1.31906 * 119.57496 * 199.12757 * 12 11 9 26 26 H 1.09001 * 109.46918 * 59.99990 * 1 2 3 27 27 H 1.09002 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47339 * 300.00146 * 1 2 3 29 29 H 1.09005 * 109.47342 * 54.99734 * 4 2 1 30 30 H 1.08994 * 109.47740 * 175.00218 * 4 2 1 31 31 H 1.09004 * 109.47276 * 60.00076 * 6 5 4 32 32 H 1.09002 * 109.47430 * 179.97438 * 6 5 4 33 33 H 1.09001 * 109.47205 * 300.00424 * 6 5 4 34 34 H 0.96996 * 119.99948 * 5.58649 * 11 9 2 35 35 H 1.08002 * 120.24653 * 0.03972 * 13 12 11 36 36 H 1.07996 * 120.66667 * 179.97438 * 14 13 12 37 37 H 1.08001 * 120.43032 * 180.02562 * 15 14 13 38 38 H 0.97003 * 119.99811 * 354.93238 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 16 1.5601 0.2156 2.7266 6 6 2.2538 -0.8027 4.0578 7 8 2.2381 1.4643 2.7109 8 8 0.1433 0.1967 2.8342 9 6 2.0324 -0.7104 -1.2305 10 8 2.7296 -1.6964 -1.1192 11 7 1.7068 -0.2500 -2.4546 12 6 2.0722 -0.9699 -3.5892 13 6 2.4093 -2.3201 -3.4701 14 6 2.7735 -3.0353 -4.6008 15 6 2.7909 -2.3837 -5.8211 16 6 2.4410 -1.0233 -5.8756 17 6 2.4546 -0.3438 -7.1149 18 1 2.5911 -0.8969 -8.0325 19 6 2.2913 1.0464 -7.1531 20 7 1.9902 1.6385 -8.2791 21 14 2.5038 2.0549 -5.5950 22 1 1.1976 2.1697 -4.8979 23 1 3.4841 1.3862 -4.7024 24 1 2.9983 3.4102 -5.9464 25 7 2.1011 -0.3666 -4.7618 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 3.1263 -0.7995 1.2056 31 1 3.3339 -0.8789 3.9319 32 1 2.0323 -0.3423 5.0207 33 1 1.8127 -1.7988 4.0209 34 1 1.2179 0.5829 -2.5452 35 1 2.3864 -2.8034 -2.5045 36 1 3.0381 -4.0799 -4.5303 37 1 3.0697 -2.9134 -6.7201 38 1 1.9521 1.1257 -9.1016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882474321.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:08:16 Heat of formation + Delta-G solvation = -78.466419 kcal Electronic energy + Delta-G solvation = -23632.944302 eV Core-core repulsion = 19988.741404 eV Total energy + Delta-G solvation = -3644.202898 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 312.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.42232 -38.33832 -37.31698 -36.41114 -34.94744 -34.67733 -33.51076 -31.12642 -30.16244 -29.58071 -27.68487 -25.53830 -24.40826 -21.88937 -21.54714 -19.74344 -19.19114 -18.41611 -17.80936 -17.12696 -16.51535 -16.41526 -15.94164 -15.54112 -15.07236 -14.73848 -14.24885 -14.17180 -13.67638 -13.64451 -13.60623 -13.26585 -13.15083 -12.87833 -12.57737 -12.29980 -12.27124 -11.99055 -11.93882 -11.80949 -11.60286 -11.39082 -11.21236 -10.92212 -10.78560 -10.37256 -10.03405 -9.78093 -9.26689 -9.11940 -8.56102 -7.95821 -7.47436 -7.31188 -4.79909 -0.39128 2.11307 2.36889 2.62480 2.94808 3.05776 3.36146 3.45677 3.58369 3.66213 3.87711 4.04624 4.30145 4.33749 4.38923 4.54656 4.57889 4.60960 4.89829 5.10132 5.23559 5.29991 5.49881 5.53146 5.64885 5.82100 5.98353 6.04174 6.41450 6.48043 6.50482 7.08068 7.14354 7.40131 7.51515 7.55466 7.72769 8.06741 8.22130 8.36718 8.61403 9.39146 9.94069 Molecular weight = 312.10amu Principal moments of inertia in cm(-1) A = 0.023013 B = 0.003549 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.432289 B = 7887.438782 C = 8684.496068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.116 0.884 4 C -0.593 4.593 5 S 2.421 3.579 6 C -0.655 4.655 7 O -0.937 6.937 8 O -0.934 6.934 9 C 0.527 3.473 10 O -0.511 6.511 11 N -0.651 5.651 12 C 0.382 3.618 13 C -0.312 4.312 14 C -0.037 4.037 15 C -0.276 4.276 16 C 0.274 3.726 17 C -0.480 4.480 18 H 0.084 0.916 19 C 0.049 3.951 20 N -0.802 5.802 21 Si 1.142 2.858 22 H -0.287 1.287 23 H -0.280 1.280 24 H -0.325 1.325 25 N -0.594 5.594 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.141 0.859 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.409 0.591 35 H 0.138 0.862 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.335 -3.331 20.856 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.119 4.119 3 H 0.134 0.866 4 C -0.721 4.721 5 S 2.604 3.396 6 C -0.805 4.805 7 O -0.935 6.935 8 O -0.932 6.932 9 C 0.312 3.688 10 O -0.386 6.386 11 N -0.296 5.296 12 C 0.151 3.849 13 C -0.337 4.337 14 C -0.061 4.061 15 C -0.299 4.299 16 C 0.150 3.850 17 C -0.512 4.512 18 H 0.102 0.898 19 C -0.173 4.173 20 N -0.423 5.423 21 Si 0.975 3.025 22 H -0.214 1.214 23 H -0.208 1.208 24 H -0.258 1.258 25 N -0.319 5.319 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.244 0.756 35 H 0.155 0.845 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.671 -0.914 21.430 21.514 hybrid contribution 0.601 -2.986 -1.003 3.207 sum -1.070 -3.900 20.427 20.824 Atomic orbital electron populations 1.22329 0.91143 1.04821 1.05389 1.20978 0.98673 1.00948 0.91318 0.86646 1.30225 1.13046 1.14382 1.14486 1.07825 0.76144 0.77180 0.78488 1.30247 1.14074 1.16737 1.19442 1.93618 1.76259 1.37706 1.85881 1.93587 1.27326 1.86871 1.85376 1.20154 0.79967 0.84908 0.83741 1.90615 1.36111 1.25723 1.86121 1.43238 1.55752 1.26108 1.04483 1.18082 0.93612 0.88069 0.85166 1.21486 1.18377 0.93500 1.00302 1.20910 0.94870 0.97803 0.92516 1.21617 1.14402 0.96750 0.97120 1.18180 0.87537 0.89615 0.89677 1.20675 1.43331 0.94585 0.92593 0.89785 1.27663 0.88284 0.96949 1.04418 1.70614 1.28676 1.42147 1.00899 0.82153 0.78287 0.70537 0.71529 1.21416 1.20759 1.25754 1.66191 1.29484 1.37903 0.98342 0.90499 0.90755 0.88737 0.84042 0.83920 0.85198 0.85231 0.85167 0.75553 0.84507 0.87674 0.87688 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 8.73 37.16 0.32 -1.45 16 2 C -0.10 -1.05 2.72 -91.77 -0.25 -1.30 16 3 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.59 -4.64 4.61 37.16 0.17 -4.47 16 5 S 2.42 17.06 5.15 -107.50 -0.55 16.50 16 6 C -0.66 -2.42 10.62 101.05 1.07 -1.35 16 7 O -0.94 -10.18 18.10 -57.83 -1.05 -11.23 16 8 O -0.93 -9.19 15.46 -57.83 -0.89 -10.09 16 9 C 0.53 8.23 7.00 -10.98 -0.08 8.15 16 10 O -0.51 -9.24 12.72 5.57 0.07 -9.17 16 11 N -0.65 -11.69 5.26 -11.40 -0.06 -11.75 16 12 C 0.38 8.62 7.51 -154.99 -1.16 7.46 16 13 C -0.31 -6.90 8.83 -38.89 -0.34 -7.24 16 14 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 15 C -0.28 -6.56 9.83 -38.66 -0.38 -6.94 16 16 C 0.27 7.15 6.27 -85.00 -0.53 6.61 16 17 C -0.48 -12.96 9.51 -37.73 -0.36 -13.32 16 18 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 19 C 0.05 1.32 5.51 -17.35 -0.10 1.22 16 20 N -0.80 -21.56 13.65 55.55 0.76 -20.80 16 21 Si 1.14 27.37 25.93 -169.99 -4.41 22.97 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.88 6.55 56.52 0.37 -6.51 16 24 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 25 N -0.59 -14.92 5.06 -10.26 -0.05 -14.97 16 26 H 0.08 0.72 7.70 -51.93 -0.40 0.32 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.89 5.40 -51.93 -0.28 0.61 16 29 H 0.14 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.14 1.00 7.95 -51.93 -0.41 0.59 16 31 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.13 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.41 6.40 8.42 -40.82 -0.34 6.06 16 35 H 0.14 2.90 5.33 -52.50 -0.28 2.62 16 36 H 0.11 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 38 H 0.28 7.32 8.73 -40.82 -0.36 6.97 16 LS Contribution 329.95 15.07 4.97 4.97 Total: -1.00 -35.83 329.95 -7.95 -43.79 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.71 Total: 3.60 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -2.03 Total: -13.81 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.65 Total: -47.53 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -1.87 Total: -30.48 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.41 Total: 22.97 kcal Atomic # 16 Polarization: 17.06 SS G_CDS: -0.55 Total: 16.50 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.83 -7.95 -43.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882474321.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.681 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds